Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
PLEKHN1	84069	mdanderson.org	37	1	909350	909350	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_032129	exon14	c.A1572G	p.G524G	GAAGGGAGCCCTG		20	2	0.10	36	0	0				4	0	0.00			
ACAP3	116983	mdanderson.org	37	1	1231205	1231205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_030649	exon18	c.T1616C	p.L539P	GGCCGCAGGCACT		18	3	0.17	20	0	0				28	0	0.00			
MEGF6	1953	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	3440791	3440791	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001409	exon5	c.C501A	p.T167T	GTTGTGGGTTCGG		100	5	0.05	129	0	0				1	0	0.00			
TFAP2E	339488	mdanderson.org	37	1	36054040	36054040	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_178548	exon4	c.G672A	p.R224R	CGGCCGGCTTTCA		41	3	0.07	50	0	0				0	0				
OSCP1	127700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36888403	36888403	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_145047	exon6	c.T715A	p.Y239N	CTCCATAAAGTTC		106	21	0.20	120	0	0				27	6	0.22			
KCNA2	3737	mdanderson.org	37	1	111136543	111136543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001204269	exon5	c.C1043A	p.A348D	GTTACAGCTGGTG		44	3	0.07	52	0	0				0	0				
LOC148696	0	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	207992469	207992469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	.	.	.	.	ATCTCCCGGCTCC		89	15	0.17	68	0	0				0	0				
PLXNA2	5362	broad.mit.edu	37	1	208205034	208205034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	PLXNA2	NM_025179	exon29	c.T5126C	p.L1709P	AGGGGGAGAGCGC		200	4	0.02	174	1	0.0057471264		178		138	0	0.00			
LAMB3	3914	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	209799360	209799361	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	CA	CA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	LAMB3	NM_000228	exon14	c.1609_1610del	p.537_537del	GGAAATCACAGTC		113	37	0.33	95	0	0		136		0	0				
KIN	22944	broad.mit.edu	37	10	7820886	7820886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	KIN	NM_012311	exon5	c.A473G	p.K158R	TTTTTCTTTTTCT		138	3	0.02	152	1	0.0065789474		39		32	0	0.00			
ITGA8	8516	mdanderson.org	37	10	15761727	15761727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_003638	exon1	c.C44A	p.P15Q	ATCAGCGGCGCCT		11	2	0.18	11	0	0				0	0				
.	256815	bcgsc.ca;mdanderson.org	37	10	23592330	23592330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	.	.	.	.	ATATTTGTTTTGA		181	14	0.08	142	0	0				0	0				
MMRN2	79812	mdanderson.org	37	10	88702582	88702582	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_024756	exon6	c.C1959A	p.L653L	CCAGCCGAGCGCC		17	2	0.12	17	0	0				1	0	0.00			
PDZD7	79955	mdanderson.org	37	10	102772009	102772009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001195263	exon12	c.C1756T	p.H586Y	CCTCGTGCACATA		38	3	0.08	24	0	0				0	0				
PDCD4	27250	broad.mit.edu	37	10	112647501	112647501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	PDCD4	NM_014456	exon6	c.A634G	p.K212E	GAGGGGAAGGCTA		173	3	0.02	141	0	0		39		12	1	0.08	rescued with RNA-seq		
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	129901783	129901783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_002417	exon13	c.C8321T	p.P2774L	GGAGCCGGTGTCT		133	9	0.07	156	0	0				6	0	0.00			
NLRP6	171389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	281495	281495	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_138329	exon4	c.C1761T	p.P587P	CTGCCCCGGAGTG		50	12	0.24	51	0	0				0	0				
MUC6	4588	bcgsc.ca	37	11	1016801	1016801	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	MUC6	NM_005961	exon31	c.C6000G	p.H2000Q	CTGAGGGTGTGAT		390	16	0.04	405	8	0.0197530864		408		0	0				
MUC2	4583	mdanderson.org	37	11	1093434	1093434	+	Silent	SNP	C	C	T	rs12786901	bycluster	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_002457	exon30	c.C5253T	p.T1751T	CACCACCACGGTG		26	5	0.19	33	1	0.0303030303				0	0				
FOLH1	2346	bcgsc.ca	37	11	49204790	49204790	+	Silent	SNP	A	A	G	rs76509850	bycluster;byfrequency	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	FOLH1	NM_004476	exon7	c.T831C	p.Y277Y	ATAAGCATATTCT		137	12	0.09	110	0	0		141		0	0				
SLC22A20	0	broad.mit.edu	37	11	64989730	64989730	+	RNA	DEL	C	C	-	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	SLC22A20	.	.	.	.	CCAAGTCCTCTGT		6	2	0.33	6	0	0		36		0	0				
LTBP3	4054	mdanderson.org	37	11	65306612	65306612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001130144	exon28	c.G3851A	p.C1284Y	GCTTTGCAGACGC		11	3	0.27	19	0	0				37	0	0.00			
TECTA	7007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121028809	121028809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_005422	exon13	c.A4565G	p.D1522G	TGCCCGACATCTC		88	66	0.75	115	0	0				0	0				
ERC1	23085	broad.mit.edu	37	12	1292505	1292505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	ERC1	NM_178040	exon11	c.A2075G	p.K692R	TGAAAAAGGACTC		731	7	0.01	314	0	0		95		2	0	0.00			
DDX11	1663	broad.mit.edu	37	12	31238044	31238044	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	DDX11	NM_030653	exon5	c.622delA	p.K208fs	GAGGAGAAAAAGG		634	8	0.01	319	0	0		188		16	0	0.00			
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57600263	57600263	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_002332	exon76	c.G11598A	p.E3866E	CTCTGAGTACCAG		49	27	0.55	62	0	0				19	9	0.47			
HECTD4	283450	mdanderson.org	37	12	112601498	112601498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001109662	exon74	c.C12343T	p.R4115W	GCAGCCGCAGGCT		47	3	0.06	46	0	0				1	0	0.00			
TMEM132C	92293	broad.mit.edu	37	12	129028614	129028614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	TMEM132C	NM_001136103	exon3	c.G1087T	p.A363S	ACCGTGGCCTGCC		141	5	0.04	153	0	0		142		0	0				
DCT	1638	ucsc.edu	37	13	95131234	95131234	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	DCT	NM_001129889	exon1	c.C276T	p.H92H	GGTCCGGTGGAAG		40	4	0.10	43	0	0		186		0	0				
KLF13	51621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	31619961	31619961	+	Silent	SNP	G	G	C	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_015995	exon1	c.G546C	p.S182S	ATCTTCGCACCTC		66	17	0.26	80	0	0				2	0	0.00			
CORO2B	10391	mdanderson.org	37	15	69011560	69011560	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_006091	exon10	c.A1158G	p.G386G	GCTGGGAGGCATC		56	4	0.07	54	0	0				0	0				
IL16	3603	mdanderson.org	37	15	81598276	81598276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001172128	exon17	c.G3448T	p.A1150S	GGGCTGGCCTCCC		46	3	0.07	76	0	0				22	0	0.00			
SEMA4B	10509	hgsc.bcm.edu	37	15	90764683	90764683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_020210	exon7	c.A680G	p.K227R	CCACCAAGACCGA		95	4	0.04	140	0	0				6	0	0.00			
.	0	broad.mit.edu	37	15	102312095	102312095	+	RNA	SNP	G	G	T	rs7179553	bycluster;by2hit2allele	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	.	.	.	.	GGATCCGAGTGCA		12	3	0.25	14	0	0				0	0				
PAQR4	124222	mdanderson.org	37	16	3021898	3021898	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	PAQR4,bladder,carcinoma,0,1	PAQR4	NM_152341	exon3	c.C771T	p.G257G	CGCCGGCGTCGTG		35	3	0.09	23	0	0		0	1	21	0	0.00			
GLG1	2734	ucsc.edu	37	16	74566050	74566050	+	Missense_Mutation	SNP	G	G	A	rs201232267		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	GLG1	NM_001145667	exon2	c.C440T	p.P147L	TTTTCAGGCTAGA		321	50	0.16	214	7	0.0327102804		106		0	0				
MC1R	4157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89985992	89985992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_002386	exon1	c.G326A	p.R109Q	TGGCCCGGGCTGC		51	10	0.20	58	0	0				5	2	0.40			
DBNDD1	79007	mdanderson.org	37	16	90075813	90075813	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	DBNDD1,rectum,carcinoma,-2,1	DBNDD1	NM_024043	exon2	c.G117A	p.P39P	AGCCTGCGGCACC		22	3	0.14	43	0	0		-2	1	8	0	0.00			
PEMT	10400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17480330	17480330	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001267552	exon2	c.C108T	p.C36C	CATAACGCAGAAG		52	16	0.31	52	0	0				81	41	0.51			
SLC47A2	146802	mdanderson.org	37	17	19610016	19610016	+	Missense_Mutation	SNP	G	G	T	rs199838072	alternate_allele	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_152908	exon9	c.C894A	p.S298R	GAGCATGCTGGGG		36	3	0.08	40	0	0				0	0				
SLC47A2	146802	mdanderson.org	37	17	19618516	19618516	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001099646	exon2	c.G138A	p.V46V	AGTCAGCACCTGG		25	3	0.12	21	0	0				0	0				
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29164229	29164229	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_024857	exon3	c.A1973C	p.K658T	GAATGAAATTCAC		435	90	0.21	248	0	0				0	0				
KRTAP4-8	728224	hgsc.bcm.edu;mdanderson.org	37	17	39254149	39254149	+	Missense_Mutation	SNP	G	G	C	rs201246375		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_031960	exon1	c.C188G	p.T63S	CAGCAGGTGGGCT		18	4	0.22	18	0	0				0	0				
KRTAP4-6	81871	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39296134	39296134	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	KRTAP4-6	NM_030976	exon1	c.C606T	p.S202S	GCAAGAGGAGGCA		249	90	0.36	206	1	0.0048543689		46		0	0				
LRRC46	90506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45914165	45914165	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_033413	exon8	c.G645A	p.R215R	GCACCGGCAACAG		80	24	0.30	67	0	0				4	2	0.50			
TNRC6C	57690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76075489	76075489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_018996	exon11	c.A3224G	p.N1075S	GTGGCAATCTGGG		94	24	0.26	70	0	0				0	0				
RNF213	57674	mdanderson.org	37	17	78360657	78360657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001256071	exon63	c.G14888T	p.R4963L	TCAGCCGCTTCCT		40	3	0.08	56	0	0				24	0	0.00			
ABCA7	10347	mdanderson.org	37	19	1062286	1062286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	ABCA7,NS,carcinoma,0,1	ABCA7	NM_019112	exon42	c.G5686T	p.G1896C	CTGCGCGGTGTCC		29	3	0.10	31	0	0		0	1	46	0	0.00			
ICAM3	3385	mdanderson.org	37	19	10450225	10450225	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_002162	exon1	c.G66A	p.L22L	GGTCAGCAGACAG		38	3	0.08	42	0	0				16	0	0.00			
TYK2	7297	bcgsc.ca	37	19	10464862	10464862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	TYK2	NM_003331	exon20	c.G2764A	p.G922S	CAGTGCCGTCGTT		58	4	0.07	58	0	0		126		56	0	0.00			
NUDT19	390916	broad.mit.edu;mdanderson.org	37	19	33183483	33183483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	NUDT19	NM_001105570	exon1	c.G617T	p.R206L	TCTTGCGGGGCAC		52	3	0.06	49	0	0		15		0	0				
TEAD2	8463	mdanderson.org	37	19	49844664	49844664	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001256661	exon13	c.C1273A	p.L425M	AGAGCAGCAGTTC		41	3	0.07	38	0	0				103	0	0.00			
FBXO41	150726	mdanderson.org	37	2	73493769	73493769	+	Missense_Mutation	SNP	G	G	T	rs369432452	alternate_allele	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	FBXO41_ENST00000521871,colon,carcinoma,0,1	FBXO41_ENST00000521871	NM_001080410	exon2	c.C947A	p.A316E	TCCCGCGCCGCCG		32	3	0.09	25	0	0		0	1	0	0				
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152381766	152381766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001271208	exon152	c.G22288A	p.V7430I	CCTTGACAAACTT		109	28	0.26	112	0	0				1	0	0.00			
B3GNT7	93010	mdanderson.org	37	2	232263436	232263436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_145236	exon2	c.G1006T	p.V336L	CTGGAGGTGCTGG		41	3	0.07	56	0	0				2	0	0.00			
YTHDF1	54915	hgsc.bcm.edu	37	20	61833918	61833918	+	Silent	SNP	G	G	A	rs368566767		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_017798	exon4	c.C1374T	p.Y458Y	GGTGCCGTAGTCC		90	4	0.04	84	0	0				44	0	0.00			
BAGE	85319	broad.mit.edu	37	21	11087107	11087108	+	RNA	INS	-	-	A	rs55727275	bycluster	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	.	.	.	.	CCATCTCAAAAAA		7	3	0.43	7	0	0				0	0				
MIR5009	0	broad.mit.edu	37	21	28793479	28793480	+	RNA	INS	-	-	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	.	.	.	.	ATGCATATTTTTT		5	1	0.20	10	0	0				0	0				
LRRC3	81543	mdanderson.org	37	21	45876718	45876718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_030891	exon2	c.C191T	p.A64V	TCCCGGCCAACAC		46	3	0.07	44	0	0				5	0	0.00			
RFPL2	10739	bcgsc.ca	37	22	32589088	32589088	+	Silent	SNP	G	G	A	rs77728135	bycluster	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	RFPL2	NM_001098527	exon4	c.C357T	p.A119A	GCAGACGGCGCAT		213	9	0.04	161	2	0.0124223602		81		18	0	0.00			
CACNA1I	8911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	40055123	40055123	+	Splice_Site	SNP	T	T	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_021096	exon12	c.2330+2T>G	.	TTCAGGTGAGCCT		53	6	0.11	51	0	0				0	0				
ITGA9	3680	mdanderson.org	37	3	37550050	37550050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_002207	exon8	c.G829T	p.V277F	CCATAGGTTTATA		43	3	0.07	38	0	0				0	0				
TMEM108	66000	broad.mit.edu	37	3	133099916	133099916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	TMEM108	NM_023943	exon4	c.A1361G	p.D454G	AGGGGGACAAACC		212	5	0.02	164	1	0.006097561		67		0	0				
FAM194A	131831	broad.mit.edu	37	3	150421540	150421540	+	Missense_Mutation	SNP	T	T	A	rs373770678		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	FAM194A	NM_152394	exon1	c.A146T	p.E49V	TCCTCCTCCACCT		131	6	0.05	104	1	0.0096153846		91		0	0				
.	0	bcgsc.ca	37	4	8983308	8983308	+	RNA	SNP	C	C	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	.	.	.	.	CCTGCTCATCATC		34	7	0.21	22	0	0				0	0				
.	0	bcgsc.ca	37	4	8983310	8983310	+	RNA	SNP	T	T	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	.	.	.	.	TGCTCATCATCCT		33	6	0.18	23	0	0				0	0				
ATP8A1	10396	hgsc.bcm.edu	37	4	42524317	42524317	+	Splice_Site	SNP	C	C	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001105529	exon22	c.1763-1G>T	.	TTAACCCTGAAAA		65	5	0.08	71	0	0				0	0				
SETD7	80854	mdanderson.org	37	4	140432921	140432921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_030648	exon8	c.G997A	p.V333I	AGGCAACGGTGAG		47	3	0.06	54	0	0				1	0	0.00			
SETD7	80854	mdanderson.org	37	4	140432973	140432973	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_030648	exon8	c.C945A	p.P315P	TTTGATGGGCCCA		42	3	0.07	40	0	0				0	0				
FAT2	2196	mdanderson.org	37	5	150923405	150923405	+	Missense_Mutation	SNP	A	A	T	rs6892335	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001447	exon9	c.T7283A	p.F2428Y	TTAATGAAGAAGT		63	2	0.03	67	0	0				0	0				
FOXF2	2295	broad.mit.edu	37	6	1390978	1390980	+	In_Frame_Del	DEL	CAC	CAC	-	rs368362837		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	CAC	CAC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	FOXF2	NM_001452	exon1	c.796_798del	p.266_266del	CACCCTCACCACC		6	2	0.33	8	0	0		28		0	0				
GPANK1	7918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31631709	31631709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001199238	exon3	c.C547T	p.L183F	CAGCGAGCTGAGC		54	25	0.46	71	0	0				90	39	0.43			
CSNK2B	1460	mdanderson.org	37	6	31635645	31635645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001320	exon3	c.G73T	p.V25L	TGACAGGTGGATG		44	3	0.07	58	0	0				366	0	0.00			
UTRN	7402	broad.mit.edu;mdanderson.org	37	6	144869950	144869950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	UTRN	NM_007124	exon46	c.G6770T	p.G2257V	CTGTTGGGGATGT		58	4	0.07	92	0	0		327		0	0				
TNRC18	84629	mdanderson.org	37	7	5427362	5427362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001080495	exon5	c.G2093A	p.G698D	AGCCGGCCACTGC		26	3	0.12	32	0	0				16	0	0.00			
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20406739	20406739	+	Silent	SNP	T	T	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_002214	exon3	c.T318G	p.V106V	GCATGTTATAATA		119	29	0.24	77	0	0				5	2	0.40			
SKAP2	8935	broad.mit.edu	37	7	26766623	26766626	+	Splice_Site	DEL	TGTC	TGTC	-	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	TGTC	TGTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	SKAP2,caecum,carcinoma,+1,1	SKAP2	NM_003930	exon7	c.470_472del	p.157_158del	GTTGTTTGTCTGT		103	7	0.07	36	0	0		40	1	0	0				
.	0	broad.mit.edu	37	7	38284886	38284887	+	RNA	DEL	GT	GT	-	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	GT	GT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	.	.	.	.	GTCAAGGTGTGTG		6	2	0.33	4	0	0				0	0				
PPIA	5478	mdanderson.org	37	7	44839373	44839373	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_021130	exon4	c.T262A	p.F88I	GAGAACTTCATCC		21	3	0.14	15	0	0				5067	2	0.00			
POR	5447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	75615073	75615073	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_000941	exon13	c.C1575G	p.F525L	GCCCTTCAAGGCC		86	14	0.16	82	0	0				133	32	0.24			
PCLO	27445	broad.mit.edu	37	7	82784471	82784471	+	Missense_Mutation	SNP	A	A	G	rs199515717	bycluster	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	Q9Y6V0-3,NS,carcinoma,0,15	PCLO	NM_014510	exon2	c.T1486C	p.S496P	TTGCTGAGCCAGG		60	4	0.07	40	0	0		1506	15	0	0				
PUS7	54517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	105105799	105105799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	PUS7,NS,carcinoma,+2,2	PUS7	NM_019042	exon13	c.C1588T	p.P530S	GCAAGGGCATTAC		87	17	0.20	61	0	0		2	2	7	4	0.57			
CDHR3	222256	broad.mit.edu	37	7	105641932	105641932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	CDHR3	NM_152750	exon7	c.G738T	p.L246L	AGTCCTGGAGGAA		244	5	0.02	200	0	0		153		0	0				
CPA2	1358	hgsc.bcm.edu;broad.mit.edu	37	7	129919488	129919488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_001869	exon9	c.G973A	p.D325N	TTAGATGACTTTG		150	6	0.04	115	0	0				3	0	0.00			
MLL3	58508	broad.mit.edu	37	7	151921174	151921174	+	Silent	SNP	G	G	A	rs1910986		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	MLL3_ENST00000355193,NS,carcinoma,0,2	MLL3	NM_170606	exon20	c.C3249T	p.S1083S	AGATAAGCTTGCA		226	6	0.03	164	0	0		1564	2	1	0	0.00			
PABPC1	26986	hgsc.bcm.edu	37	8	101721953	101721953	+	Missense_Mutation	SNP	T	T	A	rs370158190	alternate_allele	TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	PABPC1,NS,carcinoma,+2,1	PABPC1	NM_002568	exon8	c.A979T	p.M327L	CCTCCATCATAAC		74	6	0.08	64	1	0.015625		2	1	289	0	0.00			
MLLT3	4300	broad.mit.edu	37	9	20414374	20414376	+	In_Frame_Del	DEL	CTA	CTA	-	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	CTA	CTA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	MLLT3,NS,carcinoma,+1,4	MLLT3	NM_004529	exon5	c.468_470del	p.156_157del	CTGCTGCTACTGC		24	9	0.38	32	0	0		125	4	0	0				
GAS1	2619	mdanderson.org	37	9	89561103	89561103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_002048	exon1	c.C592T	p.R198C	TGCAGCGCAGCCC		29	3	0.10	16	0	0				0	0				
RBM10	8241	broad.mit.edu;mdanderson.org	37	X	47030579	47030579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	RBM10	NM_001204468	exon4	c.G549T	p.E183D	GGAGGAGGAGGAT		56	4	0.07	63	0	0		117		1	0	0.00			
RPS6KA6	27330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83361424	83361424	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_014496	exon15	c.T1314C	p.S438S	GCAAACAGAGTAG		118	54	0.46	97	0	0				0	0				
PDZD4	57595	mdanderson.org	37	X	153071022	153071022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALF-01A-11D-A42Y-10	TCGA-2G-AALF-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89e5fae9-a016-48cc-9110-92269f6ad3c1	e8b2c448-8d20-49cb-9252-ce55a9ffde6c	.	.	NM_032512	exon6	c.G589A	p.A197T	GGATGGCCACCGC		35	3	0.09	28	0	0				0	0				
