Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
ESPNP	0	broad.mit.edu	37	1	17030903	17030905	+	RNA	DEL	GAG	GAG	-	rs55663095	alternate_allele	TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	GAG	GAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	.	.	.	.	ATCGACGAGGAGG		9	5	0.56	7	0	0				0	0				
ALDH4A1	8659	mdanderson.org	37	1	19216533	19216533	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_003748	exon2	c.C129A	p.G43G	AGGGCTGCCCTGC		31	3	0.10	34	0	0				1	0	0.00			
HMGCL	3155	broad.mit.edu	37	1	24151935	24151935	+	Translation_Start_Site	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	HMGCL	.	.	.	.	AGTCCAGCTGGGC		51	3	0.06	84	0	0		22		0	0				
MACF1	23499	broad.mit.edu	37	1	39783026	39783026	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	MACF1	NM_012090	exon30	c.A3744G	p.K1248K	GGAAAAAGGCTCC		114	3	0.03	120	0	0		909		0	0				
OVGP1	5016	bcgsc.ca	37	1	111957533	111957533	+	Silent	SNP	C	C	T	rs112145355	bycluster	TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	OVGP1	NM_002557	exon11	c.G1590A	p.Q530Q	CACAGACTGATGA		147	29	0.20	120	1	0.0083333333		177		3	0	0.00			
OVGP1	5016	bcgsc.ca	37	1	111957556	111957556	+	Missense_Mutation	SNP	T	T	C	rs140282461		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	OVGP1	NM_002557	exon11	c.A1567G	p.T523A	TCAGGGTCTTTTC		131	10	0.08	126	0	0		177		6	0	0.00			
.	728841	broad.mit.edu	37	1	144220807	144220807	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	ENSG00000162825_ENST00000369365,NS,carcinoma,0,4	.	.	.	.	.	TGCTGGATGAGAA		102	10	0.10	80	1	0.0125			4	2	1	0.50			
DENND4B	9909	broad.mit.edu	37	1	153914771	153914771	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	DENND4B	NM_014856	exon5	c.C702A	p.P234P	GAAGACGGGCACT		61	3	0.05	62	0	0		210		2	0	0.00			
RGL1	23179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183816714	183816714	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_015149	exon4	c.G258A	p.Q86Q	GGACCAGCTGCCT		95	21	0.22	88	0	0				0	0				
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394	bycluster	TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	CSGALNACT2,NS,carcinoma,0,5	CSGALNACT2	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT		135	5	0.04	151	1	0.0066225166		67	5	7	0	0.00			
PGBD3	0	broad.mit.edu	37	10	50724864	50724864	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	PGBD3	NM_170753	exon2	c.G297C	p.M99I	TGGTGGAGGTTGC		137	4	0.03	150	0	0		58		1	0	0.00			
RRP12	23223	mdanderson.org	37	10	99133414	99133414	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_015179	exon17	c.C1944A	p.G648G	GGCCATGCCCAGC		50	3	0.06	66	1	0.0151515152				10	0	0.00			
MUC2	4583	hgsc.bcm.edu	37	11	1093462	1093462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	MUC2_ENST00000441003,NS,carcinoma,0,2	MUC2_ENST00000441003	NM_002457	exon30	c.G5281A	p.G1761S	CCCACCGGCACAC		44	2	0.05	36	0	0		0	2	0	0				
PRMT3	10196	mdanderson.org	37	11	20409297	20409297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_001145166	exon1	c.G5T	p.C2F	CCATGTGCTCGTT		37	3	0.08	31	0	0				2	0	0.00			
ATN1	1822	broad.mit.edu	37	12	7045069	7045069	+	Silent	SNP	T	T	C	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	ATN1	NM_001007026	exon5	c.T639C	p.P213P	GGCCCCTCCCCCT		260	15	0.06	125	4	0.032		95		85	1	0.01			
NANOG	79923	broad.mit.edu	37	12	7947381	7947382	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	AT	AT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	NANOG	NM_024865	exon4	c.608_609del	p.203_203del	GGAACAATTCAAC		732	17	0.02	279	0	0		30		0	0				
NANOG	79923	broad.mit.edu	37	12	7947386	7947387	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	NANOG	NM_024865	exon4	c.613_614insGT	p.T205fs	AATTCAACCTGGA		674	17	0.03	265	0	0		30		0	0				
RNF6	6049	mdanderson.org	37	13	26793723	26793723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_183043	exon3	c.C64A	p.H22N	CATGATGATTATG		124	5	0.04	113	0	0				0	0				
C14orf183	0	broad.mit.edu	37	14	50550133	50550134	+	RNA	INS	-	-	TCTG	rs145296357	bycluster;by1000genomes	TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	C14orf183	.	.	.	.	ATCTCTCTCTGTC		9	4	0.44	5	0	0		9		0	0				
SERPINA1	5265	broad.mit.edu	37	14	94849140	94849140	+	Missense_Mutation	SNP	G	G	T	rs11558263	byhapmap	TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	SERPINA1	NM_001127701	exon4	c.C435A	p.S145R	GCCCTCGCTGAGG		140	5	0.04	128	1	0.0078125		51		1314	0	0.00			
SLC25A29	123096	mdanderson.org	37	14	100758776	100758776	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_001039355	exon4	c.G756A	p.A252A	CGTGGACGCCAGC		24	3	0.13	25	0	0				9	0	0.00			
HERC2P2	0	broad.mit.edu	37	15	23312380	23312380	+	RNA	DEL	T	T	-	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	.	.	.	.	ATTTTCTTTTTTT		10	2	0.20	11	0	0				0	0				
TICRR	90381	broad.mit.edu	37	15	90168410	90168410	+	Silent	SNP	A	A	C	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	C15orf42,NS,carcinoma,0,1	.	NM_152259	exon20	c.A4869C	p.S1623S	TGTGTCACCCCCC		43	10	0.23	44	6	0.1363636364			1	8	0	0.00			
MESP2	145873	hgsc.bcm.edu	37	15	90320132	90320132	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	MESP2,NS,carcinoma,-2,1	MESP2	NM_001039958	exon1	c.C544G	p.Q182E	CAGGGGCAAGGGC		16	2	0.13	23	0	0		-2	1	0	0				
RHBDF1	64285	mdanderson.org	37	16	113155	113155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_022450	exon5	c.G488A	p.R163H	AAGGCACGGCCAC		51	3	0.06	67	0	0				7	0	0.00			
TRAF7	84231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2221328	2221328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_032271	exon6	c.T412C	p.F138L	AGCGTCTTCAAAG		67	15	0.22	52	0	0				49	9	0.18			
LOC100132247	100132247	broad.mit.edu	37	16	22545906	22545906	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	RP11-368J21.2_ENST00000424340,NS,carcinoma,0,2	.	NM_001135865	exon7	c.C1602T	p.A534A	ACCTGCCGAGCGT		59	6	0.10	51	1	0.0196078431			2	70	0	0.00			
PRSS36	146547	mdanderson.org	37	16	31154162	31154162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_001258290	exon9	c.C1253A	p.T418K	ACGGGCGTGCGCA		36	3	0.08	31	0	0				0	0				
COG4	25839	hgsc.bcm.edu;mdanderson.org	37	16	70530257	70530257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_015386	exon12	c.C1559T	p.A520V	TTCACGGCACTTG		140	6	0.04	102	0	0				113	0	0.00			
SYCE1L	100130958	broad.mit.edu	37	16	77233353	77233354	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	SYCE1L	NM_001129979	exon1	c.5_6insG	p.A2fs	AAATGGCGGGGAA		199	7	0.04	193	0	0		10		30	0	0.00			
TAF1C	9013	mdanderson.org	37	16	84213858	84213858	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_005679	exon12	c.G1479A	p.L493L	AGGCAGCAGTCGG		15	3	0.20	17	0	0				52	0	0.00			
PRPF8	10594	mdanderson.org	37	17	1576479	1576479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_006445	exon24	c.C3670T	p.R1224C	CTGTGCGCTCCTT		85	4	0.05	97	0	0				9	0	0.00			
ITGAE	3682	broad.mit.edu	37	17	3660286	3660286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	ITGAE	NM_002208	exon10	c.G1163A	p.S388N	TCCATGCTGATGA		104	4	0.04	85	0	0		96		0	0				
CAMTA2	23125	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	4883462	4883462	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	CAMTA2	NM_001171167	exon9	c.G1224C	p.Q408H	GCCCCTCTGGGGG		175	6	0.03	213	1	0.0046948357		93		4	0	0.00			
C17orf61-PLSCR3	0	hgsc.bcm.edu	37	17	7307176	7307176	+	RNA	SNP	C	C	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	.	.	.	.	TGGACCCAGCTGG		83	17	0.20	86	0	0				0	0				
CPD	1362	broad.mit.edu	37	17	28758789	28758789	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	CPD	NM_001304	exon8	c.2018-1G>T	.	CTTATAGGTTCTT		129	5	0.04	96	0	0		89		0	0				
CBX1	10951	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	46154242	46154242	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_006807	exon2	c.G125A	p.W42X	CCCTTCCACTTTA		206	18	0.09	183	0	0				25	0	0.00			
PHOSPHO1	162466	mdanderson.org	37	17	47301803	47301803	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_001143804	exon3	c.C684T	p.D228D	GGCGCCGTCGCCC		43	3	0.07	31	0	0				0	0				
BZRAP1	9256	hgsc.bcm.edu	37	17	56386622	56386622	+	Silent	SNP	T	T	C	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_004758	exon22	c.A4011G	p.E1337E	TTCCTCTTCCTCC		79	8	0.10	80	0	0				8	1	0.13			
EVPL	2125	broad.mit.edu;mdanderson.org	37	17	74008164	74008164	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	EVPL	NM_001988	exon19	c.A2380C	p.T794P	CCTGCGTCAGCCT		56	3	0.05	52	0	0		155		8	1	0.13			
KISS1R	84634	mdanderson.org	37	19	920547	920547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_032551	exon5	c.G996T	p.Q332H	CCGACAGGCCTTC		13	3	0.23	22	0	0				1	0	0.00			
MATK	4145	mdanderson.org	37	19	3784375	3784375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_002378	exon4	c.C210A	p.F70L	CTTGCGGAAGGCC		36	3	0.08	31	0	0				3	0	0.00			
ICAM3	3385	mdanderson.org	37	19	10445899	10445899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_002162	exon4	c.C780A	p.D260E	CATCTGGTCCCCC		49	3	0.06	70	0	0				36	0	0.00			
SMARCA4	6597	mdanderson.org	37	19	11129657	11129657	+	Missense_Mutation	SNP	G	G	T	rs375459615	alternate_allele	TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	SMARCA4,NS,lymphoid_neoplasm,+2,3	SMARCA4	NM_003072	exon17	c.G2463T	p.E821D	GTACGAGTTTGAC		126	5	0.04	159	0	0		2	3	32	0	0.00			
MAN2B1	4125	mdanderson.org	37	19	12776540	12776540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_000528	exon2	c.C239A	p.T80N	TCCACGGTTTTGA		52	3	0.06	58	0	0				32	0	0.00			
ZNF676	163223	ucsc.edu	37	19	22363307	22363307	+	Silent	SNP	T	T	C	rs112075209	bycluster	TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	ZNF676	NM_001001411	exon3	c.A1212G	p.S404S	TGAGGATGAGTTG		48	9	0.19	61	2	0.0327868852		146		0	0				
CIC	23152	mdanderson.org	37	19	42791528	42791528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_015125	exon4	c.G509T	p.R170L	AACGTCGGACCCA		51	3	0.06	49	0	0				8	0	0.00			
TMC4	147798	mdanderson.org	37	19	54675697	54675697	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_001145303	exon2	c.C253A	p.Q85K	GGTCCTGCAGCTC		47	4	0.09	76	0	0				62	1	0.02			
ZNF628	89887	ucsc.edu	37	19	55994302	55994302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	ZNF628	NM_033113	exon3	c.T1742C	p.L581P	CCAACCTGCGGCA		34	4	0.12	27	0	0		75		8	0	0.00			
ZNF814	730051	bcgsc.ca	37	19	58385788	58385788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	ZNF814	NM_001144989	exon3	c.T970C	p.Y324H	ATTCATAAGGTCT		113	7	0.06	109	0	0		93		0	0				
ADCY3	109	mdanderson.org	37	2	25050963	25050963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_004036	exon13	c.G2240A	p.C747Y	TCCAGGCAGCTGC		101	5	0.05	80	0	0				17	0	0.00			
RNF103	7844	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	86849821	86849821	+	Silent	SNP	G	G	C	rs139047742		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_005667	exon1	c.C189G	p.P63P	CTTCTCGGGCAAC		287	24	0.08	217	0	0	0			4	0	0.00			
RGPD8	727851	broad.mit.edu	37	2	113147636	113147636	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	RGPD8	NM_001164463	exon20	c.2886delT	p.F962fs	TTGGCCAAAAATC		1798	10	0.01	1573	0	0		81		1	0	0.00			
XRN2	22803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	21319698	21319698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_012255	exon14	c.G1250A	p.R417Q	GAAGACGACAGAA		60	16	0.27	54	0	0				24	5	0.21			
NCOR1P1	0	broad.mit.edu	37	20	26094406	26094407	+	RNA	INS	-	-	C	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	.	.	.	.	CTTGCCATTTAAA		6	2	0.33	5	0	0				0	0				
FRG1B	284802	bcgsc.ca	37	20	29628225	29628225	+	Splice_Site	SNP	A	A	G	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	FRG1B	NR_003579	exon5	c.529-2A>G	.	TCACTTAGGGGAA		429	20	0.05	506	11	0.0217391304		181		1	0	0.00			
TOP3B	8940	mdanderson.org	37	22	22326986	22326986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_003935	exon4	c.C307A	p.Q103K	GCACCTGCAGGAA		48	3	0.06	92	0	0				10	0	0.00			
TTC28	23331	mdanderson.org	37	22	28388647	28388647	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_001145418	exon19	c.G5481A	p.L1827L	ATTGGGCAGACCT		52	3	0.06	59	0	0				0	0				
DYNC1LI1	51143	broad.mit.edu	37	3	32582556	32582556	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	DYNC1LI1	NM_016141	exon5	c.C711A	p.G237G	TGGAATGCCCAAG		134	4	0.03	136	0	0		23		30	1	0.03			
FAM212A	389119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49841691	49841691	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_203370	exon2	c.G135A	p.Q45Q	TGTGCAGCCCAGC		57	14	0.25	67	0	0				53	14	0.26			
ADAMTS9	56999	broad.mit.edu	37	3	64527581	64527581	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	ADAMTS9	NM_182920	exon33	c.A5130C	p.Q1710H	GCTGGGTTGGTCC		169	33	0.20	185	23	0.1243243243		206		4	0	0.00			
JAKMIP1	152789	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	6107587	6107589	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	CTC	CTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	JAKMIP1	NM_144720	exon3	c.236_238del	p.79_80del	GGTCTTCTCCTCA		54	12	0.22	72	0	0		250		1	0	0.00			
RXRB	6257	mdanderson.org	37	6	33168217	33168217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_021976	exon1	c.C37T	p.R13W	CATGCCGCTGAGG		38	3	0.08	18	0	0				9	0	0.00			
CRIP3	401262	mdanderson.org	37	6	43274254	43274254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_206922	exon5	c.C330A	p.S110R	GGGAGGGCCTTTA		117	5	0.04	120	0	0				0	0				
MMS22L	253714	mdanderson.org	37	6	97729152	97729152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_198468	exon3	c.C251A	p.A84E	ACTAATGCTGTTT		42	3	0.07	43	0	0				2	0	0.00			
TFR2	7036	mdanderson.org	37	7	100238346	100238346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	TFR2,NS,carcinoma,+2,1	TFR2	NM_003227	exon3	c.C436A	p.Q146K	GGAACTGCAGGAA		48	3	0.06	45	0	0		2	1	0	0				
KCP	375616	broad.mit.edu	37	7	128548304	128548305	+	RNA	INS	-	-	A	rs10565205	bycluster;by1000genomes	TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	KCP	.	.	.	.	AAGAAAGAAGAAA		7	4	0.57	4	0	0		16		0	0				
.	389626	bcgsc.ca	37	8	11786991	11786991	+	RNA	SNP	T	T	C	rs79082977	bycluster	TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	.	.	.	.	GATCCTTTGAGAG		30	5	0.17	36	1	0.0277777778				0	0				
PXDNL	137902	broad.mit.edu	37	8	52232504	52232504	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	PXDNL_ENST00000356297,larynx,carcinoma,+1,1	PXDNL	NM_144651	exon23	c.T4339A	p.C1447S	CTGGACAGCAGGT		191	4	0.02	140	0	0		414	1	3	0	0.00			
SLC39A4	55630	mdanderson.org	37	8	145641504	145641504	+	Missense_Mutation	SNP	G	G	A	rs201917734	bycluster	TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_017767	exon1	c.C89T	p.A30V	AGGGGCGCTGGGC		23	2	0.09	17	0	0				6	0	0.00			
MLLT3	4300	mdanderson.org	37	9	20414370	20414370	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_004529	exon5	c.C474T	p.S158S	GCTGCTGCTGCTA		33	3	0.09	30	0	0				2	0	0.00			
TLN1	7094	mdanderson.org	37	9	35711280	35711280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_006289	exon30	c.C3991A	p.L1331I	TCTTGAGGTTAGG		53	3	0.06	71	0	0				18	0	0.00			
PTCH1	5727	broad.mit.edu;bcgsc.ca	37	9	98209504	98209524	+	In_Frame_Del	DEL	CGGGCCCCGCGAGGGCCCCAG	CGGGCCCCGCGAGGGCCCCAG	-	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	CGGGCCCCGCGAGGGCCCCAG	CGGGCCCCGCGAGGGCCCCAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	PTCH1	NM_000264	exon23	c.4014_4034del	p.1338_1345del	TGAGAACGGGCCC		58	14	0.24	72	0	0		1850		8	0	0.00			
GOLGA2	2801	hgsc.bcm.edu;bcgsc.ca	37	9	131020818	131020818	+	Missense_Mutation	SNP	A	A	C	rs199744363		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_004486	exon21	c.T2124G	p.D708E	CTCCTCATCCTCC		22	4	0.18	41	0	0				0	0				
SPTAN1	6709	mdanderson.org	37	9	131344818	131344818	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_003127	exon13	c.G1633T	p.A545S	GATGTGGCCACTC		40	3	0.08	59	0	0				4	0	0.00			
ENTPD2	954	mdanderson.org	37	9	139943484	139943484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_203468	exon8	c.A1193G	p.Y398C	GCGCAGTAGTCGG		9	1	0.11	17	0	0				21	0	0.00			
ANAPC2	29882	mdanderson.org	37	9	140069899	140069899	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_013366	exon12	c.C2046T	p.S682S	CGCCTTGCTCAGT		36	3	0.08	37	0	0				123	0	0.00			
NELFB	25920	mdanderson.org	37	9	140151299	140151299	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_015456	exon4	c.G390T	p.L130L	GAAGCTGGTTATG		48	3	0.06	65	0	0				76	0	0.00			
PPP1R3F	89801	mdanderson.org	37	X	49142704	49142704	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	NM_033215	exon4	c.G1552T	p.G518X	ACAGATGGAGGGA		50	3	0.06	35	0	0				2	0	0.00			
NXF4	55999	hgsc.bcm.edu	37	X	101819124	101819124	+	RNA	SNP	G	G	C	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	.	.	.	.	TCTCCTGTCTCTC		123	6	0.05	104	0	0				0	0				
.	84443	bcgsc.ca	37	X	106846480	106846480	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	.	.	.	.	ACAACAGCAGCAG		176	11	0.06	125	0	0				0	0				
SLC6A8	6535	broad.mit.edu	37	X	152960296	152960296	+	Silent	SNP	G	G	A	rs2314070		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	SLC6A8	NM_005629	exon12	c.G1719A	p.P573P	CGTGCCGCTGCAC		57	3	0.05	46	0	0		34		43	4	0.09			
TXNRD2	10587	mdanderson.org	37	22	19885586	19885586	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALG-01A-11D-A42Y-10	TCGA-2G-AALG-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f29b7c0c-30ed-4d15-9ee2-148852f3e573	6f3fee73-6a59-47ea-891c-e9946680a400	.	.	.	.	.	.	GGGGATGCTGCGC		47	3	0.06	54	0	0				45	0	0.00			
