Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
PLEKHG5	57449	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	6537598	6537598	+	Missense_Mutation	SNP	G	G	T	rs140687324	bycluster;byfrequency;by1000genomes	TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	PLEKHG5	NM_001265592	exon3	c.C271A	p.P91T	GTGGGGGAAGGTC		35	5	0.14	53	0	0		66		6	1	0.17			
SLC2A1	6513	mdanderson.org	37	1	43395320	43395320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_006516	exon6	c.C811T	p.P271S	GGATGGGCTGGCG		43	3	0.07	56	0	0				1618	0	0.00			
SZT2	23334	mdanderson.org	37	1	43855647	43855647	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_015284	exon1	c.C8A	p.S3X	TGGCCTCGGAGCG		24	3	0.13	15	0	0				1	0	0.00			
MTF2	22823	broad.mit.edu;ucsc.edu	37	1	93580262	93580262	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	MTF2	NM_001164392	exon4	c.G304T	p.E102X	AGTGGGGAAATGG		202	58	0.29	177	1	0.0056497175		51		27	7	0.26			
NUDT17	200035	hgsc.bcm.edu	37	1	145586679	145586679	+	Silent	SNP	C	C	A	rs150364859	bycluster;byfrequency	TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	NUDT17,NS,carcinoma,-1,1	NUDT17	NM_001012758	exon8	c.G897T	p.P299P	TTTACACGGTGGG		70	5	0.07	118	2	0.0169491525		-1	1	4	0	0.00			
RASAL2	9462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	178063808	178063808	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_170692	exon1	c.C181T	p.Q61X	CAGCAACAGAGCT		219	52	0.24	212	0	0				1	1	1.00			
RGSL1	353299	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182443575	182443575	+	Silent	SNP	G	G	C	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	RGSL1	NM_001137669	exon6	c.G1329C	p.P443P	TGGTCCGTGCTTA		233	73	0.31	286	1	0.0034965035		111		0	0				
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	214788200	214788200	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_016343	exon3	c.C188G	p.T63R	AGGGTACAAACCT		271	68	0.25	302	0	0				2	0	0.00			
ACTA2	59	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	90697898	90697898	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001141945	exon8	c.G910C	p.G304R	TGGTGCCCCCTGA		145	51	0.35	232	0	0				55	8	0.15			
CYP2C19	1557	hgsc.bcm.edu	37	10	96580387	96580387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	CYP2C19,NS,carcinoma,+1,2	CYP2C19	NM_000769	exon6	c.G954T	p.E318D	CCCAGAGGTCACA		45	3	0.07	73	0	0		1	2	0	0				
TMEM180	79847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	104229774	104229774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_024789	exon4	c.C193T	p.L65F	AACAGCCTCAATG		66	19	0.29	123	0	0				4	1	0.25			
PCGF6	84108	broad.mit.edu;mdanderson.org	37	10	105110539	105110539	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	PCGF6	NM_001011663	exon1	c.G285A	p.E95E	CTCCTCCTCTTCT		29	3	0.10	53	0	0		23		12	0	0.00			
TTC40	54777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	134713076	134713076	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001200049	exon23	c.C3019T	p.R1007X	CCAGTCGCAGCTG		64	12	0.19	135	0	0				0	0				
MUC2	4583	mdanderson.org	37	11	1093298	1093298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_002457	exon30	c.C5117T	p.T1706M	CCACTACGGTGAC		20	2	0.10	32	0	0				0	0				
MUC5B	727897	broad.mit.edu	37	11	1268037	1268037	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	MUC5B	NM_002458	exon31	c.G9927A	p.P3309P	AGTGCCGACTACC		187	4	0.02	319	1	0.0031347962		473		0	0				
CARS	833	mdanderson.org	37	11	3060461	3060461	+	Missense_Mutation	SNP	G	G	T	rs200598975	bycluster;by1000genomes;alternate_allele	TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001014437	exon6	c.C614A	p.A205E	TGTGCCGCTTCAG		43	3	0.07	92	0	0				30	0	0.00			
OR51L1	119682	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5020846	5020846	+	Missense_Mutation	SNP	G	G	T	rs199789707	bycluster;alternate_allele	TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	OR51L1	NM_001004755	exon1	c.G634T	p.D212Y	GGTGTGGATTCAA		120	50	0.42	213	1	0.0046948357		60		0	0				
PC	5091	mdanderson.org	37	11	66616790	66616790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_000920	exon21	c.G3199A	p.D1067N	TCAGGTCGCTCAC		46	3	0.07	75	0	0				24	0	0.00			
TPCN2	219931	mdanderson.org	37	11	68830459	68830459	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_139075	exon6	c.653+1G>T	.	GGCCAGGTGGGCT		42	3	0.07	87	0	0				3	0	0.00			
IGSF9B	22997	mdanderson.org	37	11	133807352	133807352	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_014987	exon5	c.C598A	p.R200R	CCTCCCGACTGAC		36	3	0.08	95	0	0				1	0	0.00			
PRMT8	56341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	3701426	3701426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	PRMT8_ENST00000452611,NS,carcinoma,-2,2	PRMT8_ENST00000452611	NM_019854	exon9	c.C1009A	p.Q337K	TGGAAGCAGACCG		110	17	0.15	57	0	0		-2	2	1	1	1.00			
FAM186A	121006	broad.mit.edu	37	12	50747102	50747102	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	FAM186A_ENST00000327337,NS,carcinoma,0,3	FAM186A	NM_001145475	exon4	c.T3513C	p.L1171L	AGGGGTAAGAGGG		171	5	0.03	131	3	0.0229007634		181	3	0	0				
CALCOCO1	57658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54108460	54108460	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_020898	exon11	c.T1404C	p.S468S	CCGCTTACTTTCT		88	19	0.22	78	0	0				42	11	0.26			
SARNP	84324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56154395	56154395	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_033082	exon10	c.G531A	p.R177R	CTCCTTCCTCTTT		166	38	0.23	133	0	0				863	223	0.26			
.	0	bcgsc.ca	37	12	58361026	58361026	+	RNA	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	.	.	.	.	AAAAAAGAAAAAA		48	6	0.13	35	0	0				0	0				
.	0	bcgsc.ca	37	12	68868222	68868222	+	RNA	SNP	A	A	C	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	.	.	.	.	TGAAATAGATGCT		95	11	0.12	70	0	0				0	0				
APAF1	317	broad.mit.edu	37	12	99052954	99052954	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	APAF1	NM_181868	exon5	c.A543G	p.G181G	AGGGGGAGTGCAT		149	4	0.03	162	0	0		111		0	0				
POLR3B	55703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	106857290	106857290	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_018082	exon23	c.G2605C	p.V869L	GAAAAAGTGATGA		218	47	0.22	191	0	0				17	3	0.18			
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117657988	117657988	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001204218	exon28	c.T4164C	p.C1388C	GTCCCCACAGACG		64	19	0.30	60	0	0				0	0				
RPLP0	6175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120637146	120637146	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_053275	exon3	c.G197C	p.R66P	TGCCCTCGGATGG		134	27	0.20	98	0	0				5417	859	0.16			
NALCN-AS1	0	broad.mit.edu	37	13	101408785	101408785	+	RNA	DEL	G	G	-	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	.	.	.	.	GTCCCTGGTTAGA		6	2	0.33	5	0	0				0	0				
SPTB	6710	hgsc.bcm.edu	37	14	65242042	65242042	+	Missense_Mutation	SNP	G	G	A	rs377634587		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	SPTB_ENST00000542895,colon,carcinoma,+1,3	SPTB_ENST00000542895	NM_001024858	exon22	c.C4643T	p.A1548V	ATCTCCGCCGCCT		97	4	0.04	82	0	0		1	3	3	0	0.00			
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	68282599	68282599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_015346	exon2	c.G82A	p.E28K	CCCATTCTCCCCT		127	40	0.31	101	0	0				0	0				
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42143126	42143126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_016642	exon66	c.G10742A	p.G3581E	TCTGCCCCACTGG		101	38	0.38	158	0	0				3	0	0.00			
STRA6	64220	broad.mit.edu	37	15	74476251	74476252	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	STRA6	NM_001199042	exon14	c.1363_1364insA	p.A455fs	ATATGGCTTGGCG		66	10	0.15	94	0	0		66		29	0	0.00			
STRA6	64220	mdanderson.org	37	15	74477381	74477381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001199042	exon13	c.C1223A	p.A408D	ACCAAGGCTGAGA		53	3	0.06	73	0	0				40	0	0.00			
CSK	1445	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75094846	75094846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	CSK	NM_001127190	exon14	c.C1345T	p.H449Y	GAGCTGCACCTGT		55	22	0.40	87	1	0.0114942529		43		233	99	0.42			
MAPK8IP3	23162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1818243	1818243	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	MAPK8IP3_ENST00000250894,colon,carcinoma,+2,2	MAPK8IP3_ENST00000250894	NM_015133	exon30	c.G3603A	p.G1201G	TCCCGGGGGCATC		53	6	0.11	43	0	0		2	2	49	12	0.24			
NLRC3	197358	mdanderson.org	37	16	3614976	3614976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_178844	exon4	c.C62A	p.P21Q	TCGGCTGGGGAGC		48	4	0.08	61	0	0				0	0				
NUP93	9688	mdanderson.org	37	16	56855496	56855496	+	Silent	SNP	C	C	T	rs2118017	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_014669	exon7	c.C645T	p.L215L	AGAGCTCGATGAT		107	3	0.03	115	0	0				116	0	0.00			
WRAP53	55135	mdanderson.org	37	17	7606661	7606661	+	Silent	SNP	T	T	C	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001143991	exon11	c.T1504C	p.L502L	CTTCCCTTGCTCT		58	3	0.05	43	0	0				239	1	0.00			
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		229	12	0.05	268	17	0.0634328358				35	18	0.51			
C17orf76-AS1	125144	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	16342606	16342606	+	RNA	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	.	.	.	.	GCTGCCGTGGCTG		133	21	0.16	153	0	0				11	0	0.00			
KRTAP4-9	100132386	broad.mit.edu	37	17	39262096	39262096	+	Silent	SNP	C	C	T	rs76327324	byfrequency	TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	KRTAP4-9	NM_001146041	exon1	c.C456T	p.P152P	CCGCCCCAGCTGC		53	5	0.09	46	1	0.0217391304		110		0	0				
KRT38	8687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39594811	39594811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	KRT38,mouth,carcinoma,+1,1	KRT38	NM_006771	exon5	c.T952C	p.S318P	TCTCCGACTGGCA		124	34	0.27	138	0	0		1	1	0	0				
KRT9	3857	broad.mit.edu	37	17	39723690	39723690	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	KRT9,NS,carcinoma,0,1	KRT9	NM_000226	exon7	c.G1707A	p.G569G	GCCACCCCCACTT		274	6	0.02	320	1	0.003125		78	1	0	0				
JUP	3728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39912437	39912437	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_021991	exon13	c.C2076T	p.P692P	TCCATAGGGCTCA		93	31	0.33	105	0	0				260	52	0.20			
TGIF1	7050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	3452011	3452011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_170695	exon1	c.G34A	p.V12M	GCCGGGGTGGGCT		79	39	0.49	113	0	0				4	3	0.75			
ADNP2	22850	mdanderson.org	37	18	77875467	77875467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_014913	exon2	c.G42T	p.K14N	CAGAAAGGTGCGA		50	3	0.06	77	0	0				2	0	0.00			
FSD1	79187	mdanderson.org	37	19	4307981	4307981	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_024333	exon4	c.345+1G>T	.	CCTCAGGTGGGTG		43	3	0.07	63	0	0				1	0	0.00			
TIMM44	10469	broad.mit.edu	37	19	7997577	7997577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	TIMM44	NM_006351	exon9	c.C922A	p.P308T	AGGCCGGGTCCAC		146	5	0.03	212	0	0		47		273	0	0.00			
SIN3B	23309	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16973303	16973303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	SIN3B	NM_015260	exon9	c.G1199T	p.S400I	GATCCAGCTACCG		43	4	0.09	73	0	0		90		14	0	0.00			
MYO9B	4650	mdanderson.org	37	19	17323115	17323115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_004145	exon40	c.G6470T	p.G2157V	CCAATGGCTGAGA		15	2	0.13	17	0	0				71	0	0.00			
CRTC1	23373	mdanderson.org	37	19	18888142	18888142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001098482	exon15	c.G1903T	p.V635F	GACATGGTTCTGG		24	3	0.13	27	0	0				45	0	0.00			
SIGLEC11	114132	mdanderson.org	37	19	50453375	50453375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_052884	exon11	c.A1949G	p.Q650R	AGGCCCTGGAAGC		55	3	0.05	87	0	0				4	0	0.00			
FBXO41	150726	mdanderson.org	37	2	73493772	73493772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001080410	exon2	c.C944T	p.A315V	CGCGCCGCCGTCT		35	3	0.09	34	0	0				0	0				
LRRTM4	80059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	77746912	77746912	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	LRRTM4_ENST00000409911,NS,carcinoma,0,10	LRRTM4_ENST00000409911	NM_024993	exon3	c.C83G	p.T28R	GCACCCGTGAGCA		141	38	0.27	184	0	0		0	10	0	0				
IL18RAP	8807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	103061722	103061722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	IL18RAP,NS,carcinoma,0,2	IL18RAP	NM_003853	exon9	c.C994T	p.R332C	GATCTTCGCAGGA		118	27	0.23	165	0	0		0	2	1	0	0.00			
MALL	7851	broad.mit.edu	37	2	110849314	110849314	+	Missense_Mutation	SNP	C	C	T	rs141817647	bycluster;byfrequency	TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	MALL	NM_005434	exon2	c.G139A	p.A47T	GGGTGGCGGCTAC		144	5	0.03	131	0	0		14		2	0	0.00			
PSD4	23550	mdanderson.org	37	2	113956425	113956425	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_012455	exon15	c.G2733T	p.R911R	CGTGCGGCCCATC		13	2	0.15	8	0	0				2	0	0.00			
SCG2	7857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	224463779	224463779	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_003469	exon2	c.C222T	p.S74S	TGGGCTGCTTTCT		218	40	0.18	216	0	0				3	1	0.33			
PAX1	5075	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	21689976	21689976	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_006192	exon4	c.G1176T	p.P392P	CCCGCCGTGGCCG		14	7	0.50	16	0	0				0	0				
CD93	22918	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	23066500	23066500	+	Silent	SNP	C	C	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_012072	exon1	c.G330T	p.P110P	CTTCAGCGGCAGA		58	29	0.50	99	0	0				0	0				
PIGU	128869	mdanderson.org	37	20	33203925	33203925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_080476	exon7	c.C548A	p.A183D	AAAATAGCACTGA		47	3	0.06	60	0	0				65	0	0.00			
LCA5L	150082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	40792705	40792705	+	Missense_Mutation	SNP	C	C	T	rs370952139		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_152505	exon6	c.G902A	p.R301Q	GTCTTCCGAGTCT		142	28	0.20	129	0	0				0	0				
MGAT3	4248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39884487	39884487	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_002409	exon2	c.A1135T	p.I379F	GACGGCATCCGCC		39	15	0.38	65	0	0				4	0	0.00			
SEMA5B	54437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	122645325	122645325	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	SEMA5B_ENST00000451055,NS,malignant_melanoma,-2,3	SEMA5B_ENST00000451055	NM_001256347	exon9	c.C1212T	p.G404G	GACCTCGCCCGGG		125	34	0.27	133	0	0		-2	3	5	3	0.60			
GSX2	170825	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	54968011	54968021	+	Frame_Shift_Del	DEL	GCACTACGCGC	GCACTACGCGC	-	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	GCACTACGCGC	GCACTACGCGC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_133267	exon2	c.836_846del	p.279_282del	CCAGGTGCACTAC		105	30	0.29	202	0	0				0	0				
CDK7	1022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	68530860	68530860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001799	exon1	c.G58A	p.E20K	CTTGGGGAGGGAC		127	47	0.37	198	0	0				72	31	0.43			
BDP1	55814	broad.mit.edu	37	5	70806755	70806755	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	BDP1	NM_018429	exon17	c.A3836G	p.E1279G	AAATGGAGGCAGA		109	4	0.04	143	0	0		204		0	0				
TXNDC15	79770	mdanderson.org	37	5	134223555	134223555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_024715	exon2	c.G274T	p.V92L	CACATGGTGATGC		126	5	0.04	235	0	0				22	0	0.00			
PCDHGB7	56099	mdanderson.org	37	5	140799086	140799086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_032101	exon1	c.G1660T	p.D554Y	GTGGGCGACCGTA		53	3	0.06	75	0	0				2	0	0.00			
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141059697	141059697	+	Silent	SNP	G	G	A	rs200318347	byfrequency	TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_022481	exon2	c.C357T	p.A119A	CCCGAGGGCTGGG		39	18	0.46	56	0	0	0.005			15	8	0.53			
CDX1	1044	mdanderson.org	37	5	149546520	149546520	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001804	exon1	c.G81A	p.P27P	GGGCCCGCAAGCC		19	3	0.16	17	0	0				8	0	0.00			
RBM22	55696	mdanderson.org	37	5	150075147	150075147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_018047	exon7	c.C667A	p.L223M	GGTCCAGCCGAGG		89	4	0.04	138	0	0				49	0	0.00			
EBF1	1879	mdanderson.org	37	5	158524093	158524093	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_024007	exon2	c.C180A	p.S60S	CAGATTGGAAGGC		50	3	0.06	71	0	0				1	0	0.00			
ZFP2	80108	broad.mit.edu	37	5	178358837	178358837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	ZFP2	NM_030613	exon5	c.G523T	p.V175F	CTTACTGTCCATC		61	3	0.05	82	0	0		70		0	0				
PBX2	5089	hgsc.bcm.edu;broad.mit.edu	37	6	32155509	32155509	+	Missense_Mutation	SNP	T	T	A	rs202223627		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	PBX2,NS,carcinoma,0,4	PBX2	NM_002586	exon5	c.A785T	p.Y262F	TAGAAATACTCAT		120	7	0.06	121	2	0.0165289256	0.001	0	4	46	0	0.00			
FTSJD2	23070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	37446211	37446211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_015050	exon22	c.C2180T	p.S727F	AGGGCTCCAGTGG		118	39	0.33	159	0	0				78	22	0.28			
SLC25A51P1	442229	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	66498776	66498776	+	RNA	SNP	C	C	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	.	.	.	.	CCAACACTTATCA		75	23	0.31	100	0	0				0	0				
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90486377	90486377	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_014611	exon12	c.C1763G	p.T588R	TTGCTTGTATGCT		94	30	0.32	80	0	0				2	0	0.00			
TIAM2	26230	mdanderson.org	37	6	155450817	155450817	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_012454	exon3	c.G460T	p.E154X	CCGGGCGAAGACC		42	3	0.07	73	0	0				0	0				
C6orf123	26238	hgsc.bcm.edu	37	6	168191838	168191838	+	RNA	SNP	C	C	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	.	.	.	.	CATCAGCCCATCA		19	7	0.37	27	0	0				0	0				
GRB10	2887	broad.mit.edu;bcgsc.ca	37	7	50680448	50680454	+	Frame_Shift_Del	DEL	CTGAACG	CTGAACG	-	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	CTGAACG	CTGAACG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	GRB10	NM_005311	exon10	c.1178_1184del	p.393_395del	AGGAGTCTGAACG		99	9	0.09	104	0	0		155		40	0	0.00			
.	0	bcgsc.ca	37	7	64030014	64030014	+	RNA	SNP	T	T	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	.	.	.	.	TCCATCTGCACCT		61	11	0.18	61	0	0				0	0				
FGL2	10875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	76825646	76825646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_006682	exon2	c.T1270C	p.S424P	TGAAGGAGGACTT		115	32	0.28	108	0	0				17	0	0.00			
PPP1R9A	55607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	94539755	94539755	+	Silent	SNP	T	T	C	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_017650	exon2	c.T330C	p.D110D	AACAGATGGCTCA		207	100	0.48	219	0	0				1	1	1.00			
FEZF1	389549	broad.mit.edu;ucsc.edu	37	7	121944000	121944000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	FEZF1	NM_001024613	exon1	c.C492A	p.N164K	ACCTCGGTTCAGG		86	12	0.14	74	1	0.0135135135		60		0	0				
LRGUK	136332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	133812184	133812184	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	LRGUK,NS,carcinoma,-1,1	LRGUK	NM_144648	exon1	c.A64T	p.R22X	TTGGGCAGATCCC		199	30	0.15	131	0	0		-1	1	2	0	0.00			
ZNF398	0	broad.mit.edu	37	7	148876752	148876752	+	Silent	SNP	T	T	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	ZNF398	NM_170686	exon6	c.T1788G	p.G596G	TGGGGGTGATAGT		109	14	0.13	59	9	0.1525423729		54		88	1	0.01			
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	81399795	81399795	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_023929	exon1	c.C750G	p.F250L	CTCCTTCCAGACC		89	20	0.22	81	0	0				10	2	0.20			
ZNF706	51123	mdanderson.org	37	8	102213875	102213875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001042510	exon3	c.C95T	p.A32V	TTGGCAGCAGCCT		78	4	0.05	84	0	0				203	0	0.00			
COL14A1	7373	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	121215961	121215961	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_021110	exon9	c.G891T	p.A297A	AAACGCGGATGTG		68	4	0.06	70	0	0				0	0				
LOC100132077	0	broad.mit.edu	37	9	97108767	97108768	+	RNA	INS	-	-	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	.	.	.	.	TTACAAGTTTTTT		10	3	0.30	23	0	0				7	0	0.00			
C9orf3	84909	broad.mit.edu	37	9	97535328	97535328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	C9orf3	NM_001193331	exon3	c.T842C	p.L281P	GGGCCCTTTTTCC		101	3	0.03	176	0	0		100		3	0	0.00			
POMT1	10585	mdanderson.org	37	9	134382868	134382868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_001136113	exon5	c.G394A	p.A132T	CATTGTGCCGCCA		38	3	0.08	63	0	0				8	0	0.00			
SNAPC4	6621	hgsc.bcm.edu;mdanderson.org	37	9	139277986	139277986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_003086	exon15	c.C1635A	p.D545E	TGGCTCGTCCTCC		60	4	0.07	81	0	0				25	0	0.00			
ANAPC2	29882	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	140076172	140076172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	ANAPC2	NM_013366	exon7	c.C1429T	p.P477S	CCTCTGGCTCGCC		23	12	0.52	42	1	0.0238095238		57		41	21	0.51			
FANCB	2187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	14868779	14868779	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_152633	exon6	c.T1344C	p.P448P	ACAAAGAGGAACA		233	79	0.34	140	0	0				5	1	0.20			
PORCN	64840	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48372918	48372918	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	PORCN	NM_203475	exon9	c.T851G	p.L284R	GGGACCTGACGGT		219	55	0.25	114	1	0.0087719298		61		25	6	0.24			
PRICKLE3	4007	hgsc.bcm.edu	37	X	49033372	49033372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_006150	exon8	c.C1135A	p.R379S	TGCGGCGGCTCGG		99	4	0.04	66	0	0				16	0	0.00			
FATE1	89885	broad.mit.edu	37	X	150891213	150891213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	FATE1	NM_033085	exon5	c.G534T	p.W178C	CCTGTGGCTGTGG		212	9	0.04	167	2	0.0119760479		30		4	0	0.00			
IL9R	3581	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	X	155239821	155239821	+	Missense_Mutation	SNP	G	G	A	rs140822242	bycluster;byfrequency	TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	NM_002186	exon9	c.G1313A	p.S438N	GCAGCAGCAACAA		161	8	0.05	300	0	0	0.01			2	0	0.00			
INPP5D	3635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233925276	233925276	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALP-01A-12D-A42Y-10	TCGA-2G-AALP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fb62bace-995f-4da1-8ebb-ad5c18455253	718ac0d3-ae75-4ec9-b69b-8cda5e3d2cad	.	.	.	.	.	.	TTCCTCGTGCGTG		207	47	0.23	260	0	0				0	0				
