Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
PRAMEF2	65122	hgsc.bcm.edu	37	1	12921136	12921136	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	PRAMEF2,pharynx,carcinoma,0,1	PRAMEF2	NM_023014	exon4	c.C927T	p.D309D	AGAGGACTTGAAG		104	6	0.06	66	0	0		0	1	0	0				
PDPN	10630	broad.mit.edu	37	1	13910397	13910397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	PDPN	NM_006474	exon1	c.G97A	p.A33T	GCTCCTGCTCCCA		146	6	0.04	125	0	0		44		63	0	0.00			
CSF3R	1441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	36937224	36937224	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_156039	exon10	c.C1095T	p.S365S	CCGTCCGCTGTCT		110	6	0.05	114	0	0				7	0	0.00			
SEC22B	9554	broad.mit.edu	37	1	145109975	145109976	+	RNA	INS	-	-	C	rs11458983	bycluster	TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	.	.	.	.	AACTTTGCTAAAG		12	4	0.33	6	0	0				1	0	0.00			
KPRP	448834	broad.mit.edu	37	1	152733728	152733728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	KPRP	NM_001025231	exon2	c.G1664A	p.R555K	AGCGGAGGGGTCA		139	5	0.04	121	0	0		152		0	0				
CD1E	913	hgsc.bcm.edu;mdanderson.org	37	1	158325337	158325337	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001042584	exon3	c.G603T	p.G201G	AGCAGGGGAGTCA		86	4	0.05	56	0	0				2	0	0.00			
.	0	broad.mit.edu	37	1	222435118	222435119	+	RNA	INS	-	-	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	.	.	.	.	TAATTTCTTTTTT		6	2	0.33	5	0	0				0	0				
PI4K2A	55361	hgsc.bcm.edu	37	10	99410611	99410729	+	Frame_Shift_Del	DEL	ATTTCTTTCCAGATTCCTGCTGACTTGGTCTGTGGGCTATTTTGGTCAACTCGGATTTAACATCCTCTTTTTCTTTGGTCTCTGTAGAGGATCATTGCTGTCTTCAAACCCAAGAATGA	ATTTCTTTCCAGATTCCTGCTGACTTGGTCTGTGGGCTATTTTGGTCAACTCGGATTTAACATCCTCTTTTTCTTTGGTCTCTGTAGAGGATCATTGCTGTCTTCAAACCCAAGAATGA	-	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	ATTTCTTTCCAGATTCCTGCTGACTTGGTCTGTGGGCTATTTTGGTCAACTCGGATTTAACATCCTCTTTTTCTTTGGTCTCTGTAGAGGATCATTGCTGTCTTCAAACCCAAGAATGA	ATTTCTTTCCAGATTCCTGCTGACTTGGTCTGTGGGCTATTTTGGTCAACTCGGATTTAACATCCTCTTTTTCTTTGGTCTCTGTAGAGGATCATTGCTGTCTTCAAACCCAAGAATGA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_018425	exon2	c.436_466del	p.146_156del	CCTGTCATTTCTT		21	0	0.00	39	0	0				0	0				
SH3PXD2A	9644	mdanderson.org	37	10	105361836	105361836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_014631	exon14	c.C3055T	p.P1019S	GGGCGGGCAGTAG		43	3	0.07	55	0	0				20	0	0.00			
EMX2	2018	mdanderson.org	37	10	119307662	119307662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001165924	exon2	c.A493G	p.R165G	GAAAAAAGGGACG		44	3	0.07	49	0	0				19	0	0.00			
MUC2	4583	mdanderson.org	37	11	1093298	1093298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_002457	exon30	c.C5117T	p.T1706M	CCACTACGGTGAC		24	2	0.08	26	0	0				1	0	0.00			
KRTAP5-5	439915	hgsc.bcm.edu;broad.mit.edu	37	11	1651442	1651442	+	Silent	SNP	G	G	C	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	KRTAP5-5,bladder,carcinoma,0,4	KRTAP5-5	NM_001001480	exon1	c.G372C	p.G124G	TGGGGGGTCCAAG		28	3	0.11	37	1	0.027027027		0	4	0	0				
LRRC4C	57689	broad.mit.edu	37	11	40137725	40137725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	LRRC4C	NM_020929	exon5	c.G118A	p.G40S	CCAGACCAGCCAC		110	4	0.04	137	0	0		190		0	0				
PSMC3	5702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47445698	47445698	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_002804	exon6	c.C490T	p.L164L	TGGGCAGCGTCTC		80	12	0.15	97	0	0				355	75	0.21			
BBS1	582	mdanderson.org	37	11	66290988	66290988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_024649	exon10	c.G892T	p.V298L	ATCCGGGTACACA		47	3	0.06	121	0	0				15	0	0.00			
SUV420H1	51111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	67925696	67925697	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	TG	TG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_017635	exon11	c.2117_2118del	p.706_706del	ATTAACTGTGCAT		123	49	0.40	107	0	0				7	0	0.00			
PPP6R3	55291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68359128	68359128	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001164160	exon18	c.G1870C	p.E624Q	ATATGGGAGGAAA		51	10	0.20	53	0	0				25	3	0.12			
LRRC32	2615	mdanderson.org	37	11	76370909	76370909	+	Silent	SNP	G	G	A	rs202216778	by1000genomes	TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001128922	exon3	c.C1728T	p.C576C	ATTGCCGCAGCAG		36	3	0.08	51	1	0.0196078431	0			11	0	0.00			
VSIG2	23584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124619734	124619734	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_014312	exon4	c.G456C	p.Q152H	TCCACTCTGACTG		42	14	0.33	39	0	0				7	2	0.29			
CHD4	1108	broad.mit.edu	37	12	6709741	6709741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	CHD4	NM_001273	exon8	c.G1022A	p.R341H	CGGCTGCGGCTAC		208	5	0.02	103	0	0		539		84	0	0.00			
MLF2	8079	broad.mit.edu	37	12	6858045	6858045	+	Silent	SNP	T	T	C	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	MLF2	NM_005439	exon8	c.A663G	p.G221G	CCTTCGTCCCCCA		181	25	0.14	102	7	0.068627451		26		862	41	0.05			
DIP2B	57609	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	12	51034560	51034560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_173602	exon3	c.G226T	p.A76S	CCATCTGCAGCTC		107	5	0.05	84	0	0				3	0	0.00			
.	0	broad.mit.edu	37	12	52493869	52493869	+	RNA	DEL	C	C	-	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	.	.	.	.	TCCTCTCCCCCCC		8	3	0.38	5	0	0				0	0				
ZFC3H1	196441	mdanderson.org	37	12	72041536	72041536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_144982	exon3	c.C1073A	p.S358Y	TTTTCAGACAGAA		49	3	0.06	32	0	0				0	0				
TRAFD1	10906	broad.mit.edu	37	12	112579948	112579948	+	Silent	SNP	T	T	G	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	TRAFD1	NM_001143906	exon6	c.T699G	p.G233G	AGAGGGTGGTGAA		76	10	0.13	58	7	0.1206896552		42		41	0	0.00			
TPTE2	93492	bcgsc.ca	37	13	20056686	20056686	+	Missense_Mutation	SNP	T	T	C	rs201542496		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	TPTE2	NM_199254	exon5	c.A121G	p.M41V	CTAACATACTTTA		421	12	0.03	436	2	0.004587156		225		0	0				
TPTE2P1	0	broad.mit.edu	37	13	25527490	25527491	+	RNA	INS	-	-	AAAAAG	rs375560921		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	.	.	.	.	AGGTTCTAAAAAA		37	11	0.30	20	0	0				0	0				
RXFP2	122042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	32367149	32367149	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_130806	exon16	c.T1710A	p.N570K	GAAAAATGGAGTA		73	15	0.21	125	0	0				0	0				
THSD1	55901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	52952281	52952281	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_018676	exon5	c.T1824A	p.D608E	ATTTAGATCCAGC		66	7	0.11	119	0	0				4	0	0.00			
SALL2	6297	hgsc.bcm.edu	37	14	21991589	21991589	+	Missense_Mutation	SNP	G	G	T	rs372214185	alternate_allele	TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	SALL2,colon,carcinoma,0,1	SALL2	NM_005407	exon2	c.C2273A	p.P758Q	TCTTCCGGTGATG		62	5	0.08	64	0	0		0	1	93	0	0.00			
NYNRIN	57523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24880356	24880356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_025081	exon5	c.G2489A	p.R830Q	GACACCGAGAGGT		86	17	0.20	106	0	0				66	18	0.27			
OTUD7A	161725	mdanderson.org	37	15	31779760	31779760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_130901	exon9	c.C1160A	p.P387H	GTCAGGGGGATCA		90	5	0.06	126	0	0				0	0				
KLHL25	64410	mdanderson.org	37	15	86311959	86311959	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_022480	exon2	c.C1083T	p.Y361Y	GGTGTCGTACACC		39	3	0.08	71	0	0				9	0	0.00			
IGFALS	3483	mdanderson.org	37	16	1840925	1840925	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001146006	exon2	c.C1608A	p.P536P	GCTGTTGGGCAAT		13	2	0.15	15	0	0				8	0	0.00			
AMDHD2	51005	mdanderson.org	37	16	2579075	2579075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001145815	exon9	c.C1210A	p.L404M	GGGACCCTGGACT		28	3	0.11	35	0	0				58	0	0.00			
OR2C1	4993	mdanderson.org	37	16	3406294	3406294	+	Missense_Mutation	SNP	G	G	T	rs144910600	alternate_allele	TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_012368	exon1	c.G354T	p.M118I	GGTGATGGCATTT		50	3	0.06	59	1	0.0169491525				0	0				
TFAP4	7023	bcgsc.ca;mdanderson.org	37	16	4312419	4312419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	TFAP4	NM_003223	exon3	c.C260T	p.A87V	AGAATGGCTGCCT		89	5	0.06	64	0	0		31		61	0	0.00			
GSPT1	2935	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	11990539	11990539	+	Silent	SNP	C	C	A	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	GSPT1	NM_002094	exon4	c.G540T	p.P180P	CTCTGGCGGCCTT		196	65	0.33	142	0	0		71		58	19	0.33			
PLA2G15	23659	mdanderson.org	37	16	68279456	68279456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_012320	exon1	c.G127T	p.V43F	GTGCTGGGTGAGG		16	2	0.13	23	0	0				22	0	0.00			
ANKRD11	29123	broad.mit.edu	37	16	89346906	89346906	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	ANKRD11	NM_001256183	exon9	c.A6044C	p.Y2015S	GCGGGGTACGGCG		58	30	0.52	53	37	0.6981132075		195		63	13	0.21			
MSL1	339287	mdanderson.org	37	17	38288344	38288344	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001012241	exon6	c.T692C	p.L231P	CAGACCTTTTGGA		47	3	0.06	60	0	0				46	0	0.00			
ACE	1636	mdanderson.org	37	17	61561704	61561704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_000789	exon12	c.G1723A	p.A575T	CTGCAGGCTGGCT		37	3	0.08	38	0	0				6	0	0.00			
SETBP1	26040	mdanderson.org	37	18	42531720	42531720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_015559	exon4	c.G2415T	p.M805I	AACTATGCCAAAT		46	3	0.07	69	0	0				4	0	0.00			
MYO5B	4645	ucsc.edu	37	18	47429149	47429149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	MYO5B	NM_001080467	exon21	c.G2626A	p.A876T	TGCGTGCCATCCA		21	4	0.19	15	0	0		178		5	0	0.00			
GRP	2922	mdanderson.org	37	18	56887564	56887564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001012512	exon1	c.G67T	p.A23S	GGGCGAGCGGTCC		15	3	0.20	14	0	0				7	0	0.00			
APC2	10297	mdanderson.org	37	19	1467050	1467050	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_005883	exon15	c.C3750T	p.C1250C	GCGCTGCCGGCTG		44	3	0.07	48	0	0				4	0	0.00			
MEX3D	399664	mdanderson.org	37	19	1556639	1556639	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001174118	exon2	c.C879A	p.G293G	GGTGGCGCCCTTG		23	3	0.13	42	0	0				42	0	0.00			
CPAMD8	27151	mdanderson.org	37	19	17038840	17038840	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_015692	exon25	c.C3490A	p.R1164R	TGGCTCGCTCAGA		72	4	0.06	76	0	0				18	0	0.00			
NCCRP1	342897	mdanderson.org	37	19	39691041	39691041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	NCCRP1,colon,carcinoma,-1,1	NCCRP1	NM_001001414	exon5	c.G604T	p.A202S	CTGCTGGCGGCCG		46	3	0.07	55	0	0		-1	1	15	0	0.00			
FIZ1	84922	mdanderson.org	37	19	56109217	56109217	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_032836	exon2	c.C15A	p.P5P	TGGGGCGGGGACG		41	3	0.07	41	0	0				10	0	0.00			
ZSCAN18	65982	mdanderson.org	37	19	58600117	58600117	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001145542	exon3	c.G659C	p.G220A	AGCTCGCCTGGTA		30	2	0.07	43	0	0				41	0	0.00			
RIF1	55183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152321277	152321277	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_018151	exon30	c.G5243C	p.G1748A	TCATTGGGTTAAA		143	43	0.30	107	0	0				7	4	0.57			
ZDBF2	57683	mdanderson.org	37	2	207162013	207162013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_020923	exon4	c.G104T	p.R35I	AGAGTAGACGTCA		112	5	0.04	75	0	0				3	0	0.00			
IRS1	3667	broad.mit.edu;mdanderson.org	37	2	227662443	227662443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	IRS1	NM_005544	exon1	c.C1012T	p.R338C	CTGGGCGGGACAT		10	4	0.40	17	0	0		141		16	7	0.44			
PTPRT	11122	broad.mit.edu;mdanderson.org	37	20	40730919	40730919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	PTPRT	NM_133170	exon27	c.C3616A	p.P1206T	CACGGGGTGTCAC		66	4	0.06	46	0	0		372		3	0	0.00			
ELMO2	63916	mdanderson.org	37	20	45000326	45000326	+	Silent	SNP	G	G	A	rs149080790	bycluster;byfrequency;by1000genomes	TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_133171	exon18	c.C1585T	p.L529L	CCCTCAGCTCCCT		51	3	0.06	31	0	0	0			49	0	0.00			
CHEK2	11200	broad.mit.edu	37	22	29091840	29091841	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	CHEK2,bladder,carcinoma,0,38	CHEK2	NM_001005735	exon12	c.C1245T	p.K416E	AAATCTTGGAGTG		279	7	0.03	217	0	0		438	38	32	0	0.00			
TRMU	55687	mdanderson.org	37	22	46731700	46731700	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_018006	exon1	c.C39T	p.G13G	GTCCGGCGGCGTG		19	2	0.11	17	0	0				23	0	0.00			
USP4	7375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49318243	49318243	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_003363	exon20	c.G2578C	p.A860P	GCCTTGCTGACAG		79	25	0.32	84	0	0				85	34	0.40			
MUC4	4585	broad.mit.edu	37	3	195512457	195512457	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	MUC4	NM_018406	exon2	c.C5994T	p.A1998A	AGGGGTGGCATGA		105	5	0.05	96	1	0.0104166667		1505		0	0				
BRD9	65980	mdanderson.org	37	5	865672	865672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_023924	exon15	c.C1550A	p.P517H	TCGTCAGGGTCCA		21	2	0.10	19	0	0				57	0	0.00			
IRX2	153572	mdanderson.org	37	5	2751510	2751510	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001134222	exon1	c.C18A	p.G6G	CAGGTAGCCCTGC		12	2	0.17	8	0	0				0	0				
IRX1	79192	broad.mit.edu;mdanderson.org	37	5	3600194	3600194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	IRX1,rectum,carcinoma,0,1	IRX1	NM_024337	exon2	c.G1132A	p.A378T	AACAGCGCATTCC		133	5	0.04	198	0	0		106	1	22	0	0.00			
ARHGEF28	64283	mdanderson.org	37	5	73205560	73205560	+	Silent	SNP	C	C	A	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001177693	exon34	c.C4485A	p.L1495L	GGACCTCCAGCTC		19	3	0.16	21	0	0				7	0	0.00			
ERAP1	51752	hgsc.bcm.edu;bcgsc.ca	37	5	96119761	96119761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001198541	exon14	c.A1967G	p.K656R	AAGGCCTTTTCAA		83	4	0.05	107	0	0				16	0	0.00			
ALDH5A1	7915	ucsc.edu;bcgsc.ca	37	6	24520647	24520647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	ALDH5A1	NM_170740	exon7	c.G928A	p.A310T	CACGCAGCAAACT		41	4	0.10	57	0	0		42		19	0	0.00			
VWA7	80737	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31740800	31740800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_025258	exon7	c.C1018A	p.L340I	CCACAAGGTGGCG		36	6	0.17	45	0	0				3	0	0.00			
NELFE	7936	mdanderson.org	37	6	31922451	31922451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_002904	exon7	c.G623A	p.R208Q	CGATCCCGGTCTC		92	4	0.04	95	0	0				316	0	0.00			
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65596686	65596686	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001142800	exon19	c.G2896C	p.D966H	TTACATCAAGTTC		85	34	0.40	122	0	0				0	0				
ZNF292	23036	mdanderson.org	37	6	87966328	87966328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_015021	exon8	c.G2981T	p.C994F	AAGATTGCTTTAA		50	3	0.06	50	0	0				3	0	0.00			
SAMD5	389432	mdanderson.org	37	6	147830332	147830332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001030060	exon1	c.G268T	p.V90F	GACGCCGTCCCCA		12	2	0.17	14	0	0				0	0				
DPY19L2P1	0	broad.mit.edu	37	7	35131521	35131521	+	RNA	SNP	G	G	A	rs200009436		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	.	.	.	.	CTTGACGCTTGCC		241	13	0.05	213	1	0.0046948357				0	0				
DPY19L2P1	554236	hgsc.bcm.edu	37	7	35163774	35163774	+	RNA	SNP	A	A	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	.	.	.	.	CATAGAAAAAATT		83	34	0.41	62	0	0				0	0				
LMTK2	22853	mdanderson.org	37	7	97823823	97823823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_014916	exon11	c.G4046T	p.W1349L	AGGACTGGAAGAA		34	3	0.09	31	0	0				10	0	0.00			
TMEM209	84928	broad.mit.edu	37	7	129843940	129843940	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	TMEM209	NM_032842	exon2	c.A14G	p.E5G	TGTGCCTCCCCCT		61	3	0.05	54	1	0.0185185185		31		4	0	0.00			
RIMS2	9699	broad.mit.edu;mdanderson.org	37	8	105261745	105261745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	RIMS2	NM_001100117	exon22	c.A3620G	p.K1207R	ACAAAAAGGGACA		94	4	0.04	85	0	0		1357		0	0				
PTK2	5747	mdanderson.org	37	8	141684497	141684497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_005607	exon29	c.C2675T	p.A892V	GGAGCTGCAGGAT		45	3	0.07	68	0	0				131	0	0.00			
MROH6	642475	mdanderson.org	37	8	144650356	144650356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001100878	exon11	c.C1720A	p.H574N	CATAGTGGGCCAC		130	5	0.04	99	0	0				9	0	0.00			
PLEC	5339	mdanderson.org	37	8	144993851	144993851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_201380	exon32	c.C10549A	p.L3517M	CTCTCAGCAGGCC		21	2	0.10	30	0	0				41	0	0.00			
RECQL4	9401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	145741150	145741150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_004260	exon6	c.C1256T	p.P419L	TCACCTGGCCGGG		97	32	0.33	74	0	0				40	7	0.18			
COL5A1	1289	broad.mit.edu	37	9	137676839	137676839	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	COL5A1	NM_000093	exon30	c.A2489G	p.E830G	AGGGGGAGATCGG		190	4	0.02	233	2	0.008583691		323		191	0	0.00			
CYTB	0	hgsc.bcm.edu	37	MT	15575	15575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	ENST00000361789	exon1	c.G829A	p.A277T	CTATTCGCCTACA		12	10	0.83	8	0	0				0	0				
SUPT20HL1	100130302	hgsc.bcm.edu;mdanderson.org	37	X	24382423	24382423	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	.	NM_001136234	exon1	c.G1546C	p.A516P	GCTGCTGCTGCTC		150	10	0.07	53	0	0				0	0				
OCRL	4952	broad.mit.edu	37	X	128691868	128691868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	OCRL	NM_000276	exon6	c.A380G	p.K127R	AGCAAAAGGACTC		708	8	0.01	357	1	0.0028011204		117		18	0	0.00			
GPC3	2719	broad.mit.edu	37	X	133119396	133119396	+	Silent	SNP	C	C	G	novel		TCGA-2G-AALQ-01A-12D-A42Y-10	TCGA-2G-AALQ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a396cd3-efe4-4bfb-9ade-41334932b612	0cd78c24-0592-4be8-8ef7-6b1c1858fc01	.	GPC3	NM_001164617	exon1	c.G81C	p.P27P	CGGCGGCGGGGGC		245	5	0.02	139	1	0.0071942446		88		869	2	0.00			
