Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
NBPF3	84224	broad.mit.edu	37	1	21807432	21807432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	NBPF3	NM_032264	exon12	c.C1391G	p.P464R	TGAAAAAGGACCA		258	4	0.02	239	0	0		55		1	0	0.00			
GJA9	81025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39340498	39340498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_030772	exon2	c.A1273G	p.T425A	CCCATGTAGCTCT		238	33	0.14	193	0	0				0	0				
FUBP1	8880	broad.mit.edu	37	1	78430879	78430879	+	Silent	SNP	T	T	C	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	FUBP1	NM_003902	exon8	c.A510G	p.K170K	TCTTCCTTTTTCA		101	3	0.03	102	0	0		112		76	0	0.00			
SEC22B	9554	broad.mit.edu	37	1	145109284	145109292	+	RNA	DEL	AAAAAAAAA	AAAAAAAAA	-	rs34197869		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	AAAAAAAAA	AAAAAAAAA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	.	.	.	.	CGTCTCAAAAAAA		6	2	0.33	4	0	0				0	0				
VPS72	6944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151156791	151156791	+	Splice_Site	SNP	A	A	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_005997	exon5	c.562+2T>A	.	AGACTTACCCAGT		93	11	0.12	83	0	0				4	4	1.00			
TTC24	164118	hgsc.bcm.edu;mdanderson.org	37	1	156551835	156551835	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_001105669	exon2	c.G679T	p.E227X	CTTGCCGAGAGGA		69	4	0.06	49	0	0				0	0				
.	0	broad.mit.edu	37	1	160905269	160905270	+	RNA	INS	-	-	A	rs56775134	bycluster	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	.	.	.	.	ACAAAACAAAAAA		6	2	0.33	7	0	0				0	0				
MRPS14	63931	mdanderson.org	37	1	174983908	174983908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_022100	exon3	c.C284A	p.S95Y	GGACGGGACGTCA		100	6	0.06	93	0	0				75	0	0.00			
C10orf114	399726	mdanderson.org	37	10	21784579	21784579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_001010911	exon2	c.C361A	p.Q121K	AGTCCTGGATGAG		49	3	0.06	47	0	0				4	0	0.00			
ZRANB1	54764	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	126673488	126673488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_017580	exon9	c.A2054G	p.D685G	GGCTTGACCGCTA		99	5	0.05	84	0	0				55	0	0.00			
MUC2	4583	mdanderson.org	37	11	1093324	1093324	+	Missense_Mutation	SNP	G	G	A	rs201143282		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	MUC2_ENST00000441003,uveal_tract,malignant_melanoma,0,2	MUC2_ENST00000441003	NM_002457	exon30	c.G5143A	p.G1715S	CCCACCGGCACAC		23	3	0.13	26	0	0		0	2	0	0				
DNHD1	144132	mdanderson.org	37	11	6592605	6592605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_144666	exon42	c.G13863T	p.Q4621H	CAGTCAGCTCCAG		36	3	0.08	41	0	0				7	0	0.00			
C11orf58	10944	mdanderson.org	37	11	16760382	16760382	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_014267	exon1	c.C57T	p.D19D	CCCAGACGACGAT		39	3	0.08	44	0	0				271	0	0.00			
ABCC8	6833	mdanderson.org	37	11	17450161	17450161	+	Missense_Mutation	SNP	G	G	A	rs148709148	bycluster;byfrequency;by1000genomes	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_000352	exon13	c.C1874T	p.A625V	TGGGGGGCACACT		43	3	0.07	41	0	0	0.001			1	0	0.00			
ZDHHC13	54503	mdanderson.org	37	11	19174229	19174229	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_019028	exon8	c.G871T	p.E291X	AAATGCGAGGTAT		46	3	0.07	71	0	0				19	0	0.00			
FOLH1	2346	bcgsc.ca	37	11	49204790	49204790	+	Silent	SNP	A	A	G	rs76509850	bycluster;byfrequency	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	FOLH1	NM_004476	exon7	c.T831C	p.Y277Y	ATAAGCATATTCT		173	9	0.05	131	1	0.0076335878		141		0	0				
KLC2	64837	broad.mit.edu;ucsc.edu	37	11	66033608	66033608	+	Silent	SNP	C	C	A	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	KLC2	NM_022822	exon14	c.C1647A	p.L549L	GAAACTCCGGGAT		120	19	0.16	109	3	0.0275229358		50		43	13	0.30			
ACY3	91703	mdanderson.org	37	11	67414472	67414472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_080658	exon3	c.G43A	p.A15T	TCACAGCCACGCG		42	3	0.07	48	0	0				0	0				
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	18573943	18573943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_004570	exon16	c.T2261C	p.L754P	AACTACTGGAATA		127	12	0.09	89	0	0				0	0				
SP1	6667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53776737	53776737	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_138473	exon3	c.A1006C	p.M336L	AGCAACATGGGAA		132	17	0.13	106	0	0				11	1	0.09			
TIMELESS	8914	mdanderson.org	37	12	56814371	56814371	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_003920	exon26	c.G3210A	p.R1070R	AGGGGGCCGAACC		73	4	0.05	52	0	0				68	0	0.00			
TIMELESS	8914	hgsc.bcm.edu;broad.mit.edu	37	12	56817448	56817448	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	TIMELESS,NS,carcinoma,0,1	TIMELESS	NM_003920	exon17	c.G2010A	p.E670E	CTCCTCCTCTTCT		90	4	0.04	45	1	0.0222222222		0	1	40	0	0.00			
TCTN1	79600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111052124	111052124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_024549	exon1	c.G137A	p.G46E	CCTTCGGAACTTT		129	16	0.12	85	0	0				15	3	0.20			
P2RX2	22953	mdanderson.org	37	12	133195575	133195575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_170683	exon1	c.G173T	p.W58L	TCGTGTGGTGCGC		29	3	0.10	39	0	0				0	0				
MYCBP2	23077	mdanderson.org	37	13	77900715	77900715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_015057	exon1	c.C196A	p.L66M	GCAGCAGCTGGTA		35	3	0.09	43	0	0				0	0				
PCCA	5095	mdanderson.org	37	13	100741384	100741384	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_001178004	exon1	c.T10G	p.F4V	GCGGGGTTCTGGG		86	19	0.22	79	8	0.1012658228				2	0	0.00			
EFS	0	broad.mit.edu	37	14	23828820	23828820	+	Silent	SNP	T	T	G	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	EFS	NM_005864	exon4	c.A867C	p.P289P	TGGGGGTGGGGGG		38	7	0.18	20	6	0.3		37		6	1	0.17			
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23893198	23893198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_000257	exon23	c.G2840A	p.C947Y	TCTGAGCACTCAT		81	12	0.15	101	0	0				0	0				
HIF1A	3091	mdanderson.org	37	14	62207590	62207590	+	Missense_Mutation	SNP	G	G	A	rs199775054	by1000genomes;alternate_allele	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_001243084	exon12	c.G1849A	p.A617T	GAAAGCGCAAGTC		137	5	0.04	129	0	0				129	0	0.00			
MESP2	145873	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	90319955	90319955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	MESP2	NM_001039958	exon1	c.G367A	p.E123K	AAGATCGAGACGC		26	4	0.15	29	0	0		20		1	0	0.00			
OR2C1	4993	mdanderson.org	37	16	3406387	3406387	+	Silent	SNP	C	C	T	rs1218763	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_012368	exon1	c.C447T	p.C149C	TGCCTGCCTGGGT		34	3	0.09	35	0	0				0	0				
CES1	1066	mdanderson.org	37	16	55853459	55853459	+	Silent	SNP	C	C	T	rs114275306	bycluster;byfrequency;by1000genomes	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	CES1_ENST00000360526,colon,carcinoma,-1,1	CES1_ENST00000360526	NM_001025195	exon7	c.G894A	p.T298T	CAATGTCGTCTCC		39	3	0.08	26	0	0	0.001	-1	1	9	0	0.00			
.	440348	broad.mit.edu	37	16	74425946	74425946	+	Nonsense_Mutation	SNP	C	C	T	rs369331764		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	NPIPL2_ENST00000429990,NS,carcinoma,0,2	.	.	.	.	.	AAAAAACAAAACA		43	6	0.14	39	1	0.0256410256			2	1	0	0.00			
.	440348	broad.mit.edu;mdanderson.org	37	16	74425961	74425961	+	Missense_Mutation	SNP	G	G	A	rs374113246		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	.	.	.	.	ACCCACGCTCCAA		32	4	0.13	32	2	0.0625				0	0				
TRPV1	7442	mdanderson.org	37	17	3493259	3493259	+	Missense_Mutation	SNP	C	C	T	rs201089655	alternate_allele	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_080706	exon5	c.G886A	p.A296T	TGTCGGCCACCTC		51	3	0.06	42	0	0				3	0	0.00			
SLC6A4	6532	broad.mit.edu	37	17	28548797	28548797	+	Silent	SNP	C	C	T	rs202193339		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	SLC6A4	NM_001045	exon3	c.G180A	p.R60R	AGAGTGCCGTGTG		203	6	0.03	176	0	0		60		0	0				
LRRC37B	114659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	30374805	30374805	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_052888	exon9	c.A2268G	p.P756P	GAATCCAGAAGGA		82	10	0.12	66	0	0				15	3	0.20			
C17orf64	124773	mdanderson.org	37	17	58506854	58506854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_181707	exon5	c.G561T	p.M187I	CAACATGCAGACC		59	4	0.07	51	0	0				2	0	0.00			
ZBTB7C	201501	hgsc.bcm.edu	37	18	45567151	45567151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	ZBTB7C,NS,carcinoma,0,1	ZBTB7C	NM_001039360	exon2	c.G328A	p.A110T	TGGCTGCGTTGAG		74	3	0.04	87	0	0		0	1	1	0	0.00			
TPM4	7171	mdanderson.org	37	19	16198892	16198892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	TPM4_ENST00000344824,colon,carcinoma,0,1	TPM4_ENST00000344824	NM_001145160	exon5	c.C548T	p.A183V	AGCGTGCGGAGGT		56	3	0.05	56	0	0		0	1	461	0	0.00			
.	0	broad.mit.edu	37	19	20242238	20242238	+	RNA	DEL	A	A	-	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	.	.	.	.	AAAAACAAAAAAA		6	2	0.33	4	0	0				2	0	0.00			
DYRK1B	9149	mdanderson.org	37	19	40316581	40316581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_004714	exon11	c.C1664A	p.P555Q	GAGGTTGGTGATG		21	2	0.10	26	0	0				25	0	0.00			
SCAF1	58506	mdanderson.org	37	19	50156724	50156724	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_021228	exon7	c.G3078A	p.E1026E	GGAGGAGGAAGAA		25	2	0.08	13	0	0				26	0	0.00			
ZNF83	55769	bcgsc.ca	37	19	53116855	53116856	+	Missense_Mutation	DNP	CT	CT	TA	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	CT	CT					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	ZNF83	NM_018300	exon3	c.A962T	p.E321V	GCCACACTCATTA		99	6	0.06	89	0	0		73		14	0	0.00			
ZNF83	55769	bcgsc.ca	37	19	53116865	53116865	+	Missense_Mutation	SNP	T	T	C	rs141749555		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	ZNF83	NM_018300	exon3	c.A953G	p.K318R	TTACATTTGTAAG		95	6	0.06	90	0	0		73		11	0	0.00			
LOC100134259	0	bcgsc.ca	37	2	47083032	47083032	+	RNA	SNP	G	G	A	rs4953430		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	.	.	.	.	ATATATGTATATA		33	10	0.30	35	0	0				0	0				
OBSL1	23363	mdanderson.org	37	2	220430187	220430187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_001173431	exon6	c.C2184A	p.F728L	GGTTGTGAAGGTC		39	3	0.08	35	0	0				108	0	0.00			
GPC1	2817	mdanderson.org	37	2	241401916	241401916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_002081	exon3	c.C634T	p.R212W	CGCCTGCGGGCCA		23	2	0.09	15	0	0				31	0	0.00			
UBASH3A	53347	mdanderson.org	37	21	43867289	43867289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	UBASH3A,bladder,carcinoma,0,1	UBASH3A	NM_018961	exon15	c.G1971T	p.W657C	GAACTGGATCTCA		23	2	0.09	26	0	0		0	1	18	0	0.00			
DGCR8	54487	mdanderson.org	37	22	20073919	20073919	+	Missense_Mutation	SNP	C	C	T	rs118025402	bycluster;by1000genomes	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_001190326	exon2	c.C433T	p.R145W	GACGTGCGGGCGG		51	3	0.06	37	0	0	0			21	0	0.00			
DDX17	10521	broad.mit.edu;mdanderson.org	37	22	38881967	38881967	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	DDX17	NM_001098504	exon13	c.T2169C	p.P723P	AGGGGGAGGAGGA		52	3	0.06	62	1	0.0161290323		73		103	0	0.00			
CHST2	9435	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	3	142840933	142840933	+	Nonsense_Mutation	SNP	C	C	G	rs140050898	bycluster;byfrequency;alternate_allele	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	CHST2,NS,carcinoma,0,1	CHST2	NM_004267	exon2	c.C1275G	p.Y425X	GCGGTACGAGGAC		89	4	0.04	72	0	0		0	1	166	1	0.01			
FGFRL1	53834	broad.mit.edu	37	4	1017489	1017489	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	FGFRL1	NM_001004356	exon4	c.A413C	p.D138A	AAGAGGACCCCGC		72	20	0.28	58	12	0.2068965517		77		13	0	0.00			
PTK7	5754	mdanderson.org	37	6	43126631	43126631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	PTK7,colon,carcinoma,0,4	PTK7	NM_001270398	exon18	c.C2822T	p.A941V	TGGCTGCGCGTAA		45	3	0.07	52	0	0		0	4	150	1	0.01			
.	0	broad.mit.edu	37	6	71962414	71962416	+	RNA	DEL	CAA	CAA	-	rs11392424	alternate_allele	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	CAA	CAA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	.	.	.	.	AAAAGGCAAAAAA		7	2	0.29	8	0	0				0	0				
ECT2L	345930	mdanderson.org	37	6	139210141	139210141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_001195037	exon19	c.G2387T	p.C796F	ATTGCTGTGATGA		49	3	0.06	48	0	0				0	0				
LOC100652739	442267	bcgsc.ca	37	6	150202646	150202646	+	RNA	SNP	C	C	T	rs6908862	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	.	.	.	.	AGAATCCGATTGA		29	4	0.14	22	0	0				0	0				
SYNE1	23345	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	6	152589280	152589280	+	Silent	SNP	G	G	C	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_182961	exon100	c.C18726G	p.A6242A	CTGCTCGGCTAAT		111	6	0.05	88	0	0				1	0	0.00			
TYW1B	441250	broad.mit.edu	37	7	72236860	72236860	+	RNA	DEL	T	T	-	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	.	.	.	.	AAATGATTTTTTT		36	9	0.25	25	0	0				0	0				
LRWD1	222229	mdanderson.org	37	7	102108606	102108606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_152892	exon6	c.G776A	p.S259N	AGGGCAGCCCTGT		41	3	0.07	28	0	0				57	0	0.00			
NRCAM	4897	bcgsc.ca;mdanderson.org	37	7	107815786	107815786	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	NRCAM	NM_001037132	exon25	c.T3168C	p.P1056P	TACATCAGGTGGA		71	5	0.07	56	0	0		267		0	0				
WASL	8976	mdanderson.org	37	7	123332847	123332847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	WASL,bladder,carcinoma,0,1	WASL	NM_003941	exon9	c.C901A	p.P301T	GAGGAGGAGGAGG		45	3	0.07	42	0	0		0	1	56	0	0.00			
TOX	9760	broad.mit.edu	37	8	59728032	59728032	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	TOX	NM_014729	exon7	c.T1257C	p.P419P	GAGGGGAGGAGGA		118	23	0.19	94	18	0.1914893617		83		19	1	0.05			
STAU2	27067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	74464275	74464275	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_001164380	exon13	c.A1502C	p.E501A	AAATATTCCAGTT		136	19	0.14	142	0	0				19	4	0.21			
.	0	broad.mit.edu	37	8	137071034	137071035	+	RNA	INS	-	-	C	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	.	.	.	.	ATATGGGCCCCCC		6	2	0.33	5	0	0				0	0				
PLEC	5339	mdanderson.org	37	8	144993788	144993788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_201380	exon32	c.C10612A	p.P3538T	GCACGGGGTCCAC		25	3	0.12	27	0	0				66	0	0.00			
NOTCH1	4851	mdanderson.org	37	9	139405668	139405668	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_017617	exon16	c.C2523T	p.G841G	CTCCCCGCCGTTT		52	3	0.06	55	0	0				16	0	0.00			
ENTPD2	954	mdanderson.org	37	9	139943414	139943414	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_203468	exon8	c.C1263A	p.G421G	CACGCCGCCGAAG		13	3	0.23	12	0	0				0	0				
IQSEC2	23096	mdanderson.org	37	X	53279934	53279934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_001111125	exon5	c.C1824A	p.D608E	TGAGCGGTCACTC		46	3	0.07	29	0	0				5	0	0.00			
FAM104B	90736	mdanderson.org	37	X	55172630	55172630	+	Nonsense_Mutation	SNP	G	G	A	rs113263757	bycluster	TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_001166700	exon3	c.C238T	p.Q80X	AGAACTGGGGAAA		40	4	0.10	23	2	0.0869565217				34	1	0.03			
AR	367	mdanderson.org	37	X	66766585	66766585	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	NM_000044	exon1	c.G1597T	p.G533X	TACTCCGGACCTT		52	3	0.06	38	0	0				0	0				
PRKDC	5591	mdanderson.org	37	8	48711905	48711905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALS-01A-12D-A42Y-10	TCGA-2G-AALS-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	34d1f451-0b1c-4caf-bd25-c4b7fc096820	120ca414-0a11-4d4b-8742-6e6b7532ab65	.	.	.	.	.	.	TGCACAGCCTCAG		44	3	0.07	28	0	0				56	0	0.00			
