Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
NPHP4	261734	mdanderson.org	37	1	5969244	5969244	+	Missense_Mutation	SNP	C	C	T	rs200462413	by1000genomes	TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_015102	exon12	c.G1471A	p.A491T	GGGCAGCGAGAAC		44	3	0.07	41	0	0	0.001			3	0	0.00			
GRIK3	2899	broad.mit.edu	37	1	37271834	37271834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	GRIK3	NM_000831	exon14	c.G2185T	p.A729S	TCAGGGCCCTCTG		121	4	0.03	115	0	0		195		0	0				
PTPRF	5792	mdanderson.org	37	1	44057152	44057152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_002840	exon9	c.C1459T	p.R487C	AGCCTGCGCGTGC		30	3	0.10	35	0	0				32	0	0.00			
LRRC41	10489	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	46768994	46768994	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_006369	exon1	c.A1T	p.M1L	CCGCCATCTTGGG		40	14	0.35	32	0	0				2	0	0.00			
SLAMF8	56833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159799841	159799841	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_020125	exon2	c.T226G	p.F76V	TCCCGCTTCCTGG		113	46	0.41	89	0	0				22	0	0.00			
IL19	29949	hgsc.bcm.edu;mdanderson.org	37	1	207010078	207010078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_153758	exon2	c.G185T	p.G62V	ACCACGGTCTCAG		88	4	0.05	84	0	0				0	0				
FMN2	56776	broad.mit.edu	37	1	240371580	240371580	+	Silent	SNP	A	A	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	FMN2,NS,carcinoma,+2,1	FMN2	NM_020066	exon5	c.A3468T	p.P1156P	GCCCCCACTTCCC		76	7	0.09	65	3	0.0461538462		451	1	0	0				
OR2L3	391192	hgsc.bcm.edu	37	1	248224864	248224864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	OR2L3,NS,carcinoma,+1,1	OR2L3	NM_001004687	exon1	c.A881G	p.K294R	GGAACAAGGAGGT		81	5	0.06	88	1	0.0113636364		1	1	0	0				
SKIDA1	387640	mdanderson.org	37	10	21806056	21806056	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_207371	exon4	c.C696T	p.A232A	AGCAGCGGCGGCG		14	3	0.21	17	0	0				0	0				
ECD	11319	broad.mit.edu;mdanderson.org	37	10	74899094	74899094	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	ECD	NM_001135752	exon12	c.C1493A	p.S498X	TGGGTTGAGACTT		66	5	0.08	67	0	0		50		39	0	0.00			
IFIT5	24138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	91178125	91178125	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_012420	exon2	c.G1169C	p.R390P	TTCACCGTAAATC		115	43	0.37	157	0	0				25	10	0.40			
LOXL4	84171	hgsc.bcm.edu;mdanderson.org	37	10	100017443	100017443	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_032211	exon8	c.C1224A	p.V408V	GCACCTGACAGCA		66	4	0.06	55	0	0				12	0	0.00			
TTC40	54777	broad.mit.edu	37	10	134755171	134755171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	TTC40	NM_001200049	exon3	c.C230A	p.A77E	ATGGGCGCCTTCA		130	5	0.04	146	0	0		100		1	0	0.00			
RPS6KA4	8986	mdanderson.org	37	11	64136051	64136051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_003942	exon11	c.G1312T	p.A438S	GAGTTCGCAGTCA		25	3	0.12	33	0	0				29	0	0.00			
CARD17	440068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	104971361	104971361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	CARD17,bladder,carcinoma,0,1	CARD17	NM_001007232	exon2	c.G153A	p.M51I	CTTATCCATAACT		124	44	0.35	151	1	0.0066225166		0	1	0	0				
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49444817	49444817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_003482	exon10	c.C2649A	p.F883L	GGGAGGGAACAAG		170	43	0.25	135	0	0				3	0	0.00			
KRT5	3852	bcgsc.ca	37	12	52912805	52912805	+	Missense_Mutation	SNP	C	C	T	rs3194286	by2hit2allele	TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	KRT5	NM_000424	exon2	c.G695A	p.S232N	ACGATGCTGTCCA		237	30	0.13	192	14	0.0729166667		88		1	0	0.00			
ATF7	11016	mdanderson.org	37	12	53918385	53918385	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_006856	exon10	c.A1088T	p.K363M	TCGGCCTTCTTCT		59	3	0.05	69	0	0				15	0	0.00			
OAS3	4940	mdanderson.org	37	12	113376380	113376380	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_006187	exon1	c.G45T	p.V15V	GTTCGTGGCCAGA		36	3	0.08	27	0	0				18	0	0.00			
RIMBP2	23504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130919365	130919365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_015347	exon11	c.G2116A	p.E706K	CCTCCTCGTCTGA		81	27	0.33	58	0	0				1	1	1.00			
ATXN8OS	6315	hgsc.bcm.edu;ucsc.edu	37	13	70681838	70681838	+	RNA	SNP	C	C	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	.	.	.	.	GCTTTACGCACAG		30	9	0.30	23	0	0				0	0				
BIVM-ERCC5	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103520594	103520594	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	ERCC5,NS,malignant_melanoma,0,1	ERCC5	NM_001204425	exon20	c.C4027G	p.L1343V	GAACCTCTCCTAA		157	74	0.47	226	2	0.0088495575		0	1	48	16	0.33			
.	0	broad.mit.edu	37	14	20086381	20086382	+	RNA	INS	-	-	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	.	.	.	.	TACAAGGTAAAAA		15	4	0.27	10	0	0				0	0				
.	0	broad.mit.edu	37	14	20146543	20146544	+	RNA	INS	-	-	GTCCC	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	.	.	.	.	CTCAGCAGAACAG		8	7	0.88	4	0	0				0	0				
IRF9	10379	mdanderson.org	37	14	24634055	24634055	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_006084	exon7	c.C882T	p.C294C	CCTTTGCCCCATC		31	3	0.10	29	0	0				118	0	0.00			
PKD1	5310	hgsc.bcm.edu	37	16	2164211	2164211	+	Missense_Mutation	SNP	G	G	A	rs74488735		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	PKD1,NS,haematopoietic_neoplasm,0,4	PKD1	NM_000296	exon11	c.C2813T	p.T938M	CTGGGCGTGGCGC		51	6	0.12	28	0	0		0	4	19	2	0.11			
E4F1	1877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2284682	2284682	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_004424	exon11	c.G1692A	p.R564R	GGTGCGGCACGTG		168	40	0.24	104	0	0				36	7	0.19			
MEFV	4210	mdanderson.org	37	16	3304520	3304520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_000243	exon2	c.C548T	p.P183L	CCGCCCGGCAGGG		42	3	0.07	24	0	0				1	0	0.00			
.	0	broad.mit.edu	37	16	32827440	32827440	+	RNA	DEL	T	T	-	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	.	.	.	.	CTTAAATCCCTCT		6	2	0.33	4	0	0				7	0	0.00			
NKD1	85407	mdanderson.org	37	16	50659443	50659443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_033119	exon6	c.G414T	p.W138C	GGAGTGGACCTTC		48	3	0.06	42	0	0				2	0	0.00			
VPS53	55275	mdanderson.org	37	17	531342	531342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_001128159	exon9	c.C817A	p.Q273K	TTTCTTGAAAAAG		92	4	0.04	49	0	0				17	0	0.00			
TAOK1	57551	mdanderson.org	37	17	27844489	27844489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_020791	exon16	c.A1723G	p.S575G	AACCAGAGTACCC		61	3	0.05	57	0	0				7	0	0.00			
MYCBPAP	84073	broad.mit.edu	37	17	48585969	48585969	+	Silent	SNP	T	T	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	MYCBPAP	NM_032133	exon1	c.T63G	p.G21G	GGCGGGTGCGGCG		168	50	0.30	120	32	0.2666666667		135		2	0	0.00			
LINGO3	645191	mdanderson.org	37	19	2291582	2291582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_001101391	exon2	c.G194A	p.R65H	CGGATGCGGTTGC		17	2	0.12	13	0	0				2	0	0.00			
DOCK6	57572	mdanderson.org	37	19	11353781	11353781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_020812	exon13	c.C1434A	p.D478E	CCTCATGTCAGCC		48	3	0.06	73	0	0				15	0	0.00			
KLK5	25818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51453209	51453209	+	Silent	SNP	C	C	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_012427	exon3	c.G237T	p.P79P	CTGCCACGGCTGG		47	21	0.45	68	0	0				0	0				
EPAS1	2034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	46603853	46603853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_001430	exon9	c.G1210A	p.A404T	CAGCTGGCTCCCA		96	21	0.22	70	0	0				52	8	0.15			
.	400986	broad.mit.edu	37	2	96646519	96646519	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	ENSG00000174501,NS,carcinoma,0,2	.	.	.	.	.	ACAGCATGTATGA		231	5	0.02	185	0	0			2	0	0				
BIN1	274	mdanderson.org	37	2	127825793	127825793	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_139343	exon7	c.C558A	p.C186X	GCCTTGGCACCAC		42	3	0.07	35	0	0				22	0	0.00			
POTEE	445582	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	131975985	131975985	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_001083538	exon1	c.G10C	p.E4Q	GTGGTTGAGGTTG		456	102	0.22	406	0	0				0	0				
ANKRD30BL	554226	broad.mit.edu	37	2	132919192	132919192	+	Silent	SNP	G	G	A	rs111295191	bycluster	TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	ANKRD30BL	.	.	.	.	AGAGTCGTTGTTG		181	4	0.02	146	1	0.0068493151		36		0	0				
KCNH7	90134	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	163374508	163374508	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	KCNH7	NM_033272	exon4	c.C624T	p.C208C	GGGGCTGCAGCTT		230	9	0.04	225	0	0		378		0	0				
ABCA12	26154	broad.mit.edu	37	2	215840567	215840567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	ABCA12	NM_173076	exon34	c.C5323A	p.P1775T	TCTCTGGATAACT		189	5	0.03	145	0	0		368		0	0				
NCAM2	4685	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	22664454	22664454	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	NCAM2	NM_004540	exon5	c.T512A	p.L171Q	ATAACCTGCAGAT		159	28	0.18	125	1	0.008		220		0	0				
SON	6651	hgsc.bcm.edu	37	21	34927489	34927489	+	Silent	SNP	G	G	C	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	SON_ENST00000300278,NS,carcinoma,0,2	SON_ENST00000300278	NM_032195	exon3	c.G5952C	p.R1984R	CCGCCGGAGCCGC		22	5	0.23	11	1	0.0909090909		0	2	38	2	0.05			
COL18A1	80781	broad.mit.edu	37	21	46876429	46876430	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	COL18A1	.	.	.	.	CCCGAGGCCCCCG		74	4	0.05	37	0	0		129		1	0	0.00			
MORC2	22880	mdanderson.org	37	22	31337530	31337530	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_014941	exon10	c.C528A	p.R176R	GAACGAGCGCCGC		53	3	0.06	59	0	0				37	0	0.00			
BAIAP2L2	80115	mdanderson.org	37	22	38503888	38503888	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_025045	exon4	c.C247A	p.R83R	AGTGCCGCTGGGT		51	3	0.06	65	0	0				38	0	0.00			
MFSD1	64747	broad.mit.edu;mdanderson.org	37	3	158538116	158538116	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	MFSD1,NS,carcinoma,0,1	MFSD1	NM_001167903	exon8	c.893+1G>T	.	TGGGAAGTGAGTA		146	5	0.03	105	0	0		88	1	0	0				
CHRD	8646	mdanderson.org	37	3	184104344	184104344	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_003741	exon16	c.T1997G	p.V666G	AGGGGGTGCGGGC		70	20	0.29	54	16	0.2962962963				7	0	0.00			
SDHAP2	0	broad.mit.edu	37	3	195412436	195412440	+	RNA	DEL	AAAGC	AAAGC	-	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	AAAGC	AAAGC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	.	.	.	.	TTTTGTAAAGCAA		9	2	0.22	10	0	0				6	0	0.00			
GSX2	170825	broad.mit.edu	37	4	54966900	54966900	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	GSX2	NM_133267	exon1	c.A389C	p.H130P	ACCACCACCCGCC		71	18	0.25	68	20	0.2941176471		27		0	0				
CLOCK	9575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56319847	56319847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_004898	exon14	c.T1127C	p.V376A	TACCTTACTACAG		157	59	0.38	207	0	0				2	1	0.50			
PF4V1	5197	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74719119	74719119	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	PF4V1	NM_002620	exon1	c.C40G	p.R14G	GCCACCCGCCAGG		151	64	0.42	213	1	0.0046948357		8		0	0				
TRPC3	7222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122831506	122831506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_001130698	exon6	c.A1595G	p.E532G	GGTCCTTCCAGCC		57	19	0.33	61	0	0				0	0				
SMARCA5	8467	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	144471183	144471186	+	Frame_Shift_Del	DEL	TTGA	TTGA	-	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	TTGA	TTGA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	SMARCA5	NM_003601	exon23	c.3018_3021del	p.1006_1007del	ATTACTTTGATTG		90	31	0.34	101	0	0		73		142	0	0.00			
GLRB	2743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	158057651	158057651	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_000824	exon5	c.A328G	p.K110E	AGACAAAAATGGA		151	63	0.42	175	0	0				3	1	0.33			
.	0	bcgsc.ca	37	4	189659658	189659658	+	RNA	SNP	G	G	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	.	.	.	.	CCAGGCGGGGTCT		250	21	0.08	297	0	0				7	0	0.00			
FLJ33360	0	broad.mit.edu	37	5	6337066	6337067	+	RNA	DEL	AC	AC	-	rs371668571	alternate_allele	TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	AC	AC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	.	.	.	.	ATACATACACACA		11	4	0.36	9	0	0				0	0				
.	0	bcgsc.ca	37	5	110320031	110320031	+	RNA	SNP	C	C	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	.	.	.	.	AGCAACCACTTCT		30	10	0.33	31	0	0				0	0				
FCHSD1	89848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	141026222	141026223	+	Missense_Mutation	DNP	CG	CG	AT	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	CG	CG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_033449	exon11	c.C991A	p.R331I	GTCAAGCGCTGAA		40	10	0.25	32	0	0				15	0	0.00			
TFAP2A	7020	broad.mit.edu;mdanderson.org	37	6	10402739	10402739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	TFAP2A	NM_003220	exon5	c.C869A	p.T290K	AGTGATGTGAGCA		85	4	0.05	129	0	0		129		0	0				
HIVEP1	3096	broad.mit.edu;mdanderson.org	37	6	12121061	12121061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	HIVEP1	NM_002114	exon4	c.G1033T	p.V345F	TCTCAGGTTACTC		90	5	0.06	137	0	0		242		6	0	0.00			
TJAP1	93643	mdanderson.org	37	6	43473144	43473144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_001146017	exon10	c.G1225T	p.D409Y	GAAGAGGACCTGC		48	3	0.06	33	0	0				65	0	0.00			
PRIM2	5558	bcgsc.ca	37	6	57398202	57398202	+	RNA	SNP	G	G	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	PRIM2	.	.	.	.	ATCTTTGTCATGG		237	16	0.07	219	1	0.00456621		95		27	8	0.30			
MTRF1L	54516	broad.mit.edu;mdanderson.org	37	6	153323668	153323668	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	MTRF1L	NM_019041	exon1	c.G153A	p.A51A	AGACCCCGCCTGG		220	52	0.24	126	1	0.0079365079		21		4	2	0.50			
TCP10	6953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167789494	167789494	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_004610	exon6	c.C648A	p.A216A	CGTGGTGGCCTGG		111	41	0.37	85	0	0				0	0				
MLLT4	4301	broad.mit.edu	37	6	168366528	168366541	+	Frame_Shift_Del	DEL	CGCCCGGTCTGTGC	CGCCCGGTCTGTGC	-	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	CGCCCGGTCTGTGC	CGCCCGGTCTGTGC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	MLLT4	NM_001207008	exon30	c.4988_4993del	p.1663_1665del	CCGAGGCGCCCGG		38	8	0.21	27	0	0		351		24	0	0.00			
C7orf26	79034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6631350	6631350	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_024067	exon2	c.C266G	p.S89C	AGGACTCTGTTCG		251	74	0.29	177	0	0				45	8	0.18			
URGCP	55665	mdanderson.org	37	7	43917157	43917157	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_001077663	exon6	c.G1905A	p.R635R	CGGCAGCCTCCCT		47	3	0.06	39	0	0				29	0	0.00			
EPHB6	2051	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	7	142562074	142562074	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_004445	exon7	c.C516T	p.S172S	CTCCTCCTCTTCT		103	5	0.05	70	0	0				8	0	0.00			
SPAG11B	10407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	7308297	7308297	+	Missense_Mutation	SNP	C	C	G	rs370915382	alternate_allele	TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	SPAG11B_ENST00000398462,NS,carcinoma,0,2	SPAG11B_ENST00000398462	NM_058201	exon3	c.G340C	p.V114L	TTGATACGCAACA		250	59	0.24	355	0	0		0	2	0	0				
LGI3	203190	mdanderson.org	37	8	22005965	22005965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_139278	exon8	c.A1355G	p.E452G	GTACCCTCCCAGC		46	3	0.07	62	1	0.0161290323				0	0				
LRRCC1	85444	broad.mit.edu	37	8	86019547	86019547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	LRRCC1,colon,carcinoma,0,2	LRRCC1	NM_033402	exon1	c.C17T	p.A6V	CGGCGGCGGTGGT		67	4	0.06	54	1	0.0185185185		212	2	3	0	0.00			
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133849987	133849987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_016018	exon17	c.G2122A	p.V708M	CACAGCGTGTGCA		49	15	0.31	67	0	0				13	3	0.23			
PLEC	5339	mdanderson.org	37	8	144992599	144992599	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_201380	exon32	c.T11801A	p.L3934Q	AGCCGCAGGGCCT		31	3	0.10	18	0	0				72	0	0.00			
PARP10	84875	mdanderson.org	37	8	145058391	145058391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_032789	exon6	c.C1667A	p.T556K	AGGCCTGTGTCCA		51	3	0.06	65	0	0				59	0	0.00			
.	0	bcgsc.ca	37	9	67334944	67334944	+	RNA	SNP	C	C	T	rs56215557	bycluster	TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	.	.	.	.	TGTGCACGTCCTG		29	8	0.28	18	0	0				13	0	0.00			
FAM22G	441457	mdanderson.org	37	9	99699464	99699464	+	Silent	SNP	A	A	G	rs2986890		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_001045477	exon5	c.A1101G	p.A367A	GCCAGCAGAGACC		101	5	0.05	89	2	0.0224719101				0	0				
PKN3	29941	hgsc.bcm.edu;mdanderson.org	37	9	131469216	131469216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_013355	exon5	c.G565T	p.V189F	CTGCACGTTGAGG		60	4	0.07	41	0	0				7	0	0.00			
NUP188	23511	broad.mit.edu;mdanderson.org	37	9	131763859	131763859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	NUP188	NM_015354	exon35	c.G3895T	p.D1299Y	GACGAGGATGGTG		102	5	0.05	87	0	0		140		65	1	0.02			
TLR7	51284	broad.mit.edu;bcgsc.ca	37	X	12903721	12903721	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	TLR7	NM_016562	exon3	c.94delA	p.K32fs	TTTCCTAAAACTC		369	67	0.18	272	0	0		125		7	0	0.00			
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83128817	83128817	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_021118	exon4	c.A1101G	p.P367P	GTACCCAGAGTCT		136	64	0.47	80	0	0				0	0				
.	0	bcgsc.ca	37	X	100793480	100793480	+	RNA	SNP	C	C	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	.	.	.	.	AACTTCCTCTTCC		65	13	0.20	61	1	0.0163934426				0	0				
RHOXF1	158800	mdanderson.org	37	X	119249677	119249677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_139282	exon1	c.C96A	p.S32R	TTCTGCGCTTGAT		46	3	0.07	38	0	0				4	0	0.00			
GPC3	2719	broad.mit.edu	37	X	133119396	133119396	+	Silent	SNP	C	C	G	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	GPC3	NM_001164617	exon1	c.G81C	p.P27P	CGGCGGCGGGGGC		250	5	0.02	135	1	0.0074074074		88		673	5	0.01			
UTY	7404	mdanderson.org	37	Y	15478190	15478190	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALW-01A-11D-A42Y-10	TCGA-2G-AALW-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413dad16-996e-44ad-9776-24e1903940a6	4f4f8383-263b-44c7-b5f1-c4c9e594f26c	.	.	NM_001258259	exon10	c.G823T	p.E275X	CTGCCTCCAAAGA		43	3	0.07	253	1	0.0039525692				4	0	0.00			
