Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
CHD5	26038	mdanderson.org	37	1	6194211	6194211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_015557	exon20	c.C3121A	p.H1041N	CACGGTGCCCCTC		34	3	0.09	39	0	0				0	0				
SLC45A1	50651	mdanderson.org	37	1	8390578	8390578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001080397	exon4	c.G1025A	p.S342N	CGCCCAGCCCCCT		75	4	0.05	59	0	0				3	0	0.00			
EFHD2	79180	mdanderson.org	37	1	15736569	15736569	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_024329	exon1	c.G102A	p.A34A	GGCAGCGGCGGCG		19	2	0.11	15	0	0				0	0				
EPHA2	1969	bcgsc.ca	37	1	16462158	16462158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	EPHA2	NM_004431	exon6	c.C1420A	p.R474S	TCTTGCGGTAAGT		56	4	0.07	49	0	0		102		34	0	0.00			
SERINC2	347735	broad.mit.edu	37	1	31897662	31897662	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	SERINC2	NM_001199038	exon4	c.A361C	p.T121P	TTTTTCACCCTGC		72	12	0.17	75	8	0.1066666667		44		170	24	0.14			
SPOCD1	90853	mdanderson.org	37	1	32259490	32259490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_144569	exon12	c.C2392A	p.P798T	TCGAGGGCTCCCA		38	3	0.08	39	0	0				4	0	0.00			
S100PBP	64766	mdanderson.org	37	1	33295580	33295580	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_022753	exon5	c.G936T	p.T312T	TCCGACGTTTTCA		44	3	0.07	62	0	0				36	0	0.00			
CLCC1	23155	broad.mit.edu	37	1	109492518	109492518	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	CLCC1	NM_001048210	exon3	c.A155G	p.K52R	ACATCCTTTTCCC		541	5	0.01	418	1	0.0023923445		55		40	0	0.00			
RGS4	5999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	163043412	163043412	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001102445	exon5	c.G669A	p.E223E	CAAAGAGGTAGGT		133	31	0.23	114	0	0				17	6	0.35			
ATP2B4	493	hgsc.bcm.edu;broad.mit.edu	37	1	203667380	203667380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001001396	exon3	c.G289T	p.V97L	GAATTAGTGTGGG		98	5	0.05	93	0	0				27	0	0.00			
UNC5B	219699	mdanderson.org	37	10	73051501	73051501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_170744	exon10	c.G1607T	p.G536V	TCTTGGGCCTGCC		21	3	0.14	33	0	0				48	0	0.00			
SORBS1	10580	mdanderson.org	37	10	97082525	97082525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001034956	exon25	c.C2456A	p.T819K	GATTCTGTGAGAT		35	3	0.09	46	0	0				0	0				
SEMA4G	57715	mdanderson.org	37	10	102743827	102743827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_017893	exon14	c.G2471A	p.R824H	TCAGCCGCATCCT		39	3	0.08	52	0	0				44	0	0.00			
TDRD1	56165	mdanderson.org	37	10	115971626	115971626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_198795	exon14	c.G1662T	p.E554D	TTCAGAGGATGAT		51	3	0.06	71	0	0				0	0				
MUC2	4583	mdanderson.org	37	11	1093185	1093185	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_002457	exon30	c.C5004T	p.T1668T	ACCCACCGGCACA		13	2	0.15	19	0	0				6	0	0.00			
ZNF143	7702	hgsc.bcm.edu	37	11	9519221	9519221	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_003442	exon10	c.842-1G>T	.	CTTAAAGGTTATG		107	5	0.05	95	0	0				1	0	0.00			
EIF4G2	1982	broad.mit.edu	37	11	10820574	10820574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	EIF4G2	NM_001172705	exon21	c.C2623A	p.Q875K	ACTCTTGGGTTAT		247	5	0.02	222	1	0.0045045045		89		2448	0	0.00			
OR4A16	81327	hgsc.bcm.edu	37	11	55110715	55110715	+	Silent	SNP	G	G	A	rs77981146	bycluster;byfrequency;by1000genomes	TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	OR4A16,NS,lymphoid_neoplasm,0,1	OR4A16	NM_001005274	exon1	c.G39A	p.L13L	CCTCCTGGGCCTC		22	3	0.14	28	1	0.0357142857	0.006	0	1	0	0				
PTGDR2	11251	mdanderson.org	37	11	60621184	60621184	+	Silent	SNP	G	G	A	rs145585912		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_004778	exon2	c.C12T	p.N4N	TGTGGCGTTGGCC		21	2	0.10	13	0	0	0			0	0				
C11orf53	341032	mdanderson.org	37	11	111156435	111156435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_198498	exon4	c.G367T	p.A123S	GTGTCTGCCGATG		28	3	0.11	40	0	0				0	0				
FAM138D	677784	hgsc.bcm.edu	37	12	148526	148526	+	RNA	SNP	G	G	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	.	.	.	.	AGAGCTGTTTGTT		64	21	0.33	21	0	0				0	0				
PDE3A	0	broad.mit.edu	37	12	20522114	20522115	+	RNA	INS	-	-	GCGT	rs138187101	bycluster;by1000genomes	TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	PDE3A	.	.	.	.	GGGAAGAGCGTGC		25	17	0.68	9	0	0		184		13	0	0.00			
LHX5	64211	mdanderson.org	37	12	113907120	113907120	+	Silent	SNP	C	C	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_022363	exon2	c.G204T	p.A68A	GCCTTGCGCGCAG		47	3	0.06	25	0	0				0	0				
UBAC2	337867	mdanderson.org	37	13	99853189	99853189	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001144072	exon1	c.G27T	p.G9G	CAGTGGGCTCTGT		39	3	0.08	36	0	0				77	0	0.00			
MYH6	4624	mdanderson.org	37	14	23853812	23853812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_002471	exon36	c.G5404A	p.A1802T	GCTCGGCCTCGTC		47	3	0.06	57	0	0				4	0	0.00			
TRAF3	7187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	103355943	103355943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_145725	exon8	c.G698A	p.S233N	CCTGTAGTTTTAA		65	11	0.17	72	0	0				16	7	0.44			
C15orf52	388115	mdanderson.org	37	15	40631802	40631802	+	Missense_Mutation	SNP	G	G	A	rs372352300		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_207380	exon3	c.C274T	p.R92W	CCTGCCGACGGTC		47	3	0.06	22	0	0				9	0	0.00			
DLL4	54567	mdanderson.org	37	15	41228737	41228737	+	Nonsense_Mutation	SNP	G	G	T	rs201981567	alternate_allele	TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_019074	exon9	c.G1552T	p.E518X	CGCTGCGAGTTCC		44	3	0.07	29	0	0				25	0	0.00			
MIR627	693212	mdanderson.org	37	15	42491770	42491770	+	RNA	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	.	.	.	.	CCATTAGTAGTAT		46	3	0.07	30	0	0				0	0				
FANCI	55215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89824446	89824446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001113378	exon15	c.G1427A	p.S476N	TTCAAAGTTGTTC		184	50	0.27	143	0	0				42	14	0.33			
ZNF205	7755	mdanderson.org	37	16	3169647	3169647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001042428	exon7	c.C986T	p.T329M	GGCGCACGCACAC		20	2	0.10	27	0	0				70	0	0.00			
LOC653786	0	broad.mit.edu	37	16	22579567	22579568	+	RNA	INS	-	-	CCA	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	.	.	.	.	GGTTAATTCATCC		45	7	0.16	48	2	0.0416666667				0	0				
HIRIP3	8479	mdanderson.org	37	16	30005069	30005069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_003609	exon5	c.C1300T	p.R434W	AGGCCCGAATGTA		30	3	0.10	26	0	0				125	0	0.00			
.	0	bcgsc.ca	37	16	32403532	32403532	+	RNA	SNP	T	T	A	rs75037542	bycluster	TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	.	.	.	.	TTCTTATGAAAAT		44	12	0.27	50	2	0.04				0	0				
PHKB	5257	mdanderson.org	37	16	47531349	47531349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	PHKB_ENST00000323584,NS,carcinoma,0,3	PHKB_ENST00000323584	NM_000293	exon2	c.G116T	p.R39I	TTCCAAGACCTGA		30	3	0.10	39	0	0		0	3	22	0	0.00			
SPG7	6687	mdanderson.org	37	16	89598891	89598891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	SPG7_ENST00000341316,NS,carcinoma,0,8	SPG7_ENST00000341316	NM_003119	exon9	c.C1171T	p.R391W	CGTGTGCGGAGCC		49	3	0.06	57	0	0		0	8	97	0	0.00			
DNAH2	146754	hgsc.bcm.edu	37	17	7637830	7637830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_020877	exon6	c.G782T	p.S261I	TGCTCAGTGCCCA		80	4	0.05	46	0	0				0	0				
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		200	11	0.06	112	5	0.0446428571				40	13	0.33			
RASL10B	91608	mdanderson.org	37	17	34062225	34062225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_033315	exon2	c.G22T	p.A8S	CGGGTGGCCGTGC		41	3	0.07	32	0	0				18	0	0.00			
IKZF3	22806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37922278	37922278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	IKZF3,NS,neuroblastoma,+1,1	IKZF3	NM_012481	exon8	c.C1295T	p.P432L	CAGATGGGCGGGG		119	37	0.31	79	0	0		1	1	1	0	0.00			
LPIN2	9663	mdanderson.org	37	18	2951054	2951054	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_014646	exon4	c.C589T	p.R197X	CCTACCGTGCTGC		50	3	0.06	50	0	0				14	0	0.00			
SOGA2	23255	mdanderson.org	37	18	8784400	8784400	+	Silent	SNP	C	C	T	rs145456770		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_015210	exon6	c.C1290T	p.S430S	CGGGAGCGGGAAG		41	3	0.07	31	0	0	0			7	0	0.00			
SMAD7	4092	mdanderson.org	37	18	46476633	46476633	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_005904	exon1	c.C162T	p.G54G	GCCCGGGCCGCCG		12	2	0.17	13	0	0				2	0	0.00			
KANK3	256949	mdanderson.org	37	19	8387794	8387794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_198471	exon11	c.C2395A	p.P799T	AGCCAGGGGGTGA		43	3	0.07	28	0	0				48	0	0.00			
BRD4	23476	mdanderson.org	37	19	15367969	15367969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	BRD4_ENST00000263377,NS,carcinoma,0,2	BRD4_ENST00000263377	NM_058243	exon8	c.C1357T	p.R453C	CAAAGCGCATTTC		41	3	0.07	45	0	0		0	2	106	0	0.00			
GRAMD1A	57655	mdanderson.org	37	19	35502430	35502430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_020895	exon7	c.G578A	p.R193H	TCTTCCGCCTCTG		43	3	0.07	24	0	0				309	1	0.00			
CAPNS1	826	broad.mit.edu	37	19	36631958	36631958	+	Silent	SNP	C	C	G	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	CAPNS1	NM_001749	exon2	c.C45G	p.G15G	CGGCGGCGGGGGA		114	5	0.04	83	1	0.0120481928		19		15	0	0.00			
HRC	3270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49657880	49657880	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_002152	exon1	c.C615T	p.A205A	AGTGGAGGCCTCC		60	16	0.27	54	0	0				5	3	0.60			
TRAPPC12	51112	broad.mit.edu	37	2	3481509	3481509	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_016030	exon10	c.A1820G	p.E607G	ACGTTGAGAAAGT		336	7	0.02	256	0	0				170	6	0.04			
SNX17	9784	mdanderson.org	37	2	27598736	27598736	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_014748	exon11	c.G1002T	p.T334T	AAGCACGAGCAGC		36	3	0.08	24	0	0				477	1	0.00			
STEAP3	55240	mdanderson.org	37	2	120005329	120005329	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_182915	exon4	c.C597T	p.P199P	CATGCCCGTGGAC		20	2	0.10	26	0	0				22	0	0.00			
SPEG	10290	mdanderson.org	37	2	220313115	220313115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_005876	exon4	c.G1235A	p.R412H	GACGGCGCAGCCT		19	2	0.11	15	0	0				9	0	0.00			
ALPPL2	251	mdanderson.org	37	2	233271628	233271628	+	Silent	SNP	C	C	G	rs61730279	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_031313	exon1	c.C24G	p.L8L	GCTGCTCCTGCTG		43	4	0.09	66	1	0.0151515152				0	0				
SPATA25	128497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44515336	44515336	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_080608	exon2	c.C504A	p.P168P	TGGGACGGGCACG		65	19	0.29	55	0	0				2	1	0.50			
SAMD10	140700	mdanderson.org	37	20	62607102	62607102	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_080621	exon4	c.C529A	p.Q177K	GCACCTGCTGCAG		17	2	0.12	12	0	0				9	0	0.00			
SCAF4	57466	broad.mit.edu	37	21	33074607	33074607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	SCAF4,NS,carcinoma,+1,1	SCAF4	NM_020706	exon5	c.C407T	p.A136V	GTTCCCGCTGCCA		254	7	0.03	178	0	0		142	1	39	0	0.00			
C22orf43	51233	broad.mit.edu	37	22	23974156	23974156	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	C22orf43	NM_016449	exon1	c.A55G	p.K19E	CGTCCTTCCCCCT		151	6	0.04	122	1	0.0081967213		18		3	0	0.00			
MKL1	57591	mdanderson.org	37	22	40807620	40807620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_020831	exon15	c.C2570A	p.P857H	GACGGGGGGTGGT		34	3	0.09	37	0	0				117	0	0.00			
TNFRSF13C	115650	mdanderson.org	37	22	42322228	42322228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_052945	exon2	c.C244A	p.P82T	GCGCGGGGGCGCC		19	2	0.11	19	0	0				2	0	0.00			
CPT1B	1375	mdanderson.org	37	22	51016324	51016324	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001145135	exon2	c.C21A	p.A7A	GGCCACGGCCTGG		32	3	0.09	26	0	0				38	0	0.00			
SCN11A	11280	mdanderson.org	37	3	38986945	38986945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_014139	exon3	c.G445T	p.G149W	CAGGCCCTGTAGC		53	3	0.06	61	0	0				0	0				
CCR9	10803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45943034	45943034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_031200	exon3	c.G754A	p.A252T	CACAAAGCCCTAA		83	24	0.29	92	0	0				0	0				
PLXNB1	5364	mdanderson.org	37	3	48454325	48454325	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001130082	exon25	c.C4680A	p.G1560G	GCCGCTGCCCAGG		34	3	0.09	39	0	0				59	0	0.00			
CNTN3	5067	mdanderson.org	37	3	74548917	74548917	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_020872	exon2	c.C75A	p.G25G	TACAGGGCCTTGT		45	3	0.07	58	0	0				5	0	0.00			
ROBO1	6091	mdanderson.org	37	3	78706359	78706359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_002941	exon18	c.T2503C	p.F835L	CGGAAAAGGTGGA		45	4	0.09	67	0	0				55	0	0.00			
H1FOO	132243	broad.mit.edu	37	3	129268107	129268108	+	Frame_Shift_Ins	INS	-	-	A	rs150160917	bycluster;by1000genomes	TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	H1FOO	NM_153833	exon3	c.642_643insA	p.A214fs	AGAGGCTAGGAAG		80	7	0.09	90	0	0		20		0	0				
CLDN18	51208	mdanderson.org	37	3	137742658	137742658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_016369	exon2	c.G379T	p.V127F	TTCATTGTCTCAG		49	3	0.06	57	0	0				4	0	0.00			
MUC4	4585	mdanderson.org	37	3	195509308	195509308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_018406	exon2	c.C9143T	p.S3048L	GATGCTGAGGAAG		115	5	0.04	33	1	0.0303030303				0	0				
KIAA1109	84162	mdanderson.org	37	4	123283210	123283210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_015312	exon84	c.G14826T	p.K4942N	AAGAAAGATTGAT		31	3	0.10	36	0	0				95	0	0.00			
LRBA	987	bcgsc.ca	37	4	151236743	151236743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	LRBA	NM_006726	exon52	c.C7696A	p.Q2566K	GCAGCTGGTATGG		51	4	0.08	36	0	0		253		35	0	0.00			
PCDHB10	56126	mdanderson.org	37	5	140573922	140573922	+	Silent	SNP	C	C	T	rs376773467	bycluster	TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_018930	exon1	c.C1797T	p.N599N	CCAGAACGCCTGG		11	2	0.18	10	0	0				0	0				
DBN1	1627	hgsc.bcm.edu	37	5	176884449	176884449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_080881	exon15	c.C1941A	p.F647L	ACCCTCGAAGCCC		84	4	0.05	80	0	0				411	2	0.00			
GRM4	2914	mdanderson.org	37	6	34026771	34026771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	GRM4_ENST00000374181,NS,malignant_melanoma,-1,6	GRM4_ENST00000374181	NM_001256811	exon5	c.C1007A	p.P336H	CTCTTGGGGAGGA		36	3	0.08	20	0	0		-1	6	1	0	0.00			
ETV7	51513	mdanderson.org	37	6	36339272	36339272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_016135	exon5	c.C499A	p.L167I	TGGTAAGCCCTGG		47	3	0.06	32	0	0				11	0	0.00			
FOXP4	116113	mdanderson.org	37	6	41556457	41556457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001012426	exon9	c.G1053T	p.Q351H	GCAGCAGCTGGAG		46	4	0.09	40	0	0				194	0	0.00			
ECT2L	345930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139223666	139223666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001195037	exon21	c.C2617T	p.P873S	CAGGGTCCAAAAT		45	14	0.31	47	0	0				0	0				
KIF25	3834	mdanderson.org	37	6	168443364	168443364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_030615	exon8	c.G953T	p.S318I	GGAACAGCAGGCT		40	3	0.08	35	0	0				1	0	0.00			
PMS2P3	0	broad.mit.edu	37	7	75142330	75142330	+	RNA	DEL	T	T	-	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	PMS2P3	.	.	.	.	TTCCTCTTTTTTT		7	3	0.43	5	0	0		7		2	0	0.00			
LAPTM4B	55353	mdanderson.org	37	8	98788291	98788291	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_018407	exon1	c.C327A	p.C109X	CTTGTGCTGCCAT		44	3	0.07	20	0	0				170	0	0.00			
BAI1	575	mdanderson.org	37	8	143614695	143614695	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001702	exon24	c.G3438T	p.L1146L	GCTGCTGGCGCTG		37	3	0.08	22	0	0				8	0	0.00			
JAK2	3717	mdanderson.org	37	9	5064922	5064922	+	Missense_Mutation	SNP	G	G	T	rs375678155	alternate_allele	TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_004972	exon9	c.G1096T	p.V366L	TCTTTCGTGTCAT		40	3	0.08	33	0	0				7	0	0.00			
ACO1	48	mdanderson.org	37	9	32431768	32431768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_002197	exon15	c.G1778T	p.R593I	CGACTAGAGACGA		49	3	0.06	57	0	0				34	0	0.00			
LAMC3	10319	mdanderson.org	37	9	133936554	133936554	+	Missense_Mutation	SNP	C	C	T	rs138199679		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_006059	exon13	c.C2291T	p.T764M	CCTGTACGACCAT		20	2	0.10	25	0	0	0			68	0	0.00			
VCX	26609	bcgsc.ca	37	X	7811810	7811810	+	Missense_Mutation	SNP	G	G	C	rs149395826		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	VCX	NM_013452	exon3	c.G374C	p.S125T	CACTGAGTCAGGA		176	12	0.07	90	0	0		28		6	0	0.00			
TSC22D3	1831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	106957876	106957876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_198057	exon3	c.A476G	p.E159G	GTGTTCTCACGCT		122	5	0.04	62	0	0				406	1	0.00			
BRCC3	79184	mdanderson.org	37	X	154305544	154305544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALX-01A-11D-A42Y-10	TCGA-2G-AALX-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1	6f7b63d6-eada-4f34-bd4c-3740da653338	.	.	NM_001242640	exon4	c.G298A	p.A100T	CTGTCTGCAGCTT		38	3	0.08	19	0	0				35	0	0.00			
