Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
CROCCP2	0	broad.mit.edu	37	1	16956611	16956611	+	RNA	SNP	G	G	C	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	.	.	.	.	GTCCTGGCTTGCC		96	3	0.03	64	0	0				0	0				
AHDC1	27245	broad.mit.edu	37	1	27878527	27878528	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	AHDC1	NM_001029882	exon6	c.100_101insCC	p.T34fs	GGGGGGTGGGGGG		47	9	0.19	35	0	0		98		3	0	0.00			
NLRP3	114548	mdanderson.org	37	1	247582355	247582355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_004895	exon1	c.G259T	p.A87S	GAGAAAGCAAAAA		19	2	0.11	17	0	0				1	0	0.00			
TBATA	219793	broad.mit.edu	37	10	72541683	72541683	+	Missense_Mutation	SNP	G	G	A	rs199669673	bycluster	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	C10orf27,colon,carcinoma,0,2	.	NM_152710	exon4	c.C151T	p.R51W	GGATCCGCTCGAA		136	4	0.03	134	0	0			2	0	0				
FAM149B1	317662	hgsc.bcm.edu	37	10	74937685	74937685	+	Silent	SNP	C	C	A	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	FAM149B1,NS,carcinoma,0,2	FAM149B1	NM_173348	exon3	c.C234A	p.G78G	TACAGGCGCAGGG		66	4	0.06	58	0	0		0	2	11	0	0.00			
IFIT3	3437	mdanderson.org	37	10	91099835	91099835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001031683	exon2	c.G1423A	p.V475I	GGCGCAGTCAGCT		42	3	0.07	48	0	0				98	0	0.00			
RRP12	23223	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	10	99126540	99126540	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_015179	exon27	c.G3174A	p.E1058E	CTCCTCCTCTTCT		57	6	0.11	45	0	0				20	0	0.00			
PKD2L1	9033	mdanderson.org	37	10	102059351	102059351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_016112	exon3	c.G474T	p.W158C	CACATCCCAGAAG		37	3	0.08	56	0	0				0	0				
NFKB2	4791	mdanderson.org	37	10	104159451	104159451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001261403	exon13	c.C1445T	p.T482M	TGCTGACGGCGCA		22	2	0.09	14	0	0				44	0	0.00			
CYP17A1	1586	mdanderson.org	37	10	104591290	104591290	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_000102	exon7	c.G1218A	p.W406X	CTGGTGCCACTCC		45	3	0.07	65	0	0				108	0	0.00			
PLEKHS1	79949	mdanderson.org	37	10	115528592	115528592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_024889	exon6	c.G378T	p.W126C	AGACTGGGTCTCC		46	3	0.07	33	0	0				0	0				
MUC2	4583	mdanderson.org	37	11	1092900	1092900	+	Silent	SNP	A	A	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_002457	exon30	c.A4719T	p.P1573P	AACCCCAACACCC		30	5	0.17	29	1	0.0344827586				0	0				
ARL14EP	120534	mdanderson.org	37	11	30354428	30354428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_152316	exon3	c.G442T	p.A148S	GCTAAAGCTTTGA		36	3	0.08	48	0	0				74	1	0.01			
MAP3K11	4296	broad.mit.edu	37	11	65375896	65375896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	MAP3K11	NM_002419	exon2	c.A763G	p.S255G	CGTCACTCTCAAT		133	4	0.03	139	0	0		67		107	0	0.00			
RIN1	9610	mdanderson.org	37	11	66100214	66100214	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	RIN1,bladder,carcinoma,+1,1	RIN1	NM_004292	exon10	c.C1885A	p.R629R	CTACTCGGAGGAG		18	2	0.11	20	0	0		1	1	50	0	0.00			
POLD3	10714	mdanderson.org	37	11	74322571	74322571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_006591	exon4	c.G247T	p.D83Y	AGAGAAGATAAAT		45	3	0.07	49	0	0				7	0	0.00			
ZNF384	171017	mdanderson.org	37	12	6777083	6777083	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001135734	exon11	c.C1531T	p.Q511X	GCTGCTGCTGCTG		49	3	0.06	44	0	0				76	3	0.04			
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49420275	49420275	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_003482	exon48	c.G15474A	p.E5158E	GTCCCGCTCAATG		65	14	0.22	55	0	0				30	1	0.03			
TMEM198B	0	broad.mit.edu	37	12	56226581	56226581	+	RNA	SNP	G	G	C	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	.	.	.	.	CCCCCCGACCCTA		65	15	0.23	39	7	0.1794871795				8	0	0.00			
LRP1	4035	mdanderson.org	37	12	57567646	57567646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_002332	exon22	c.G3430T	p.A1144S	TCCCTGGCCTGCA		77	4	0.05	61	0	0				30	0	0.00			
TMTC3	160418	mdanderson.org	37	12	88568462	88568462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_181783	exon9	c.G1278T	p.W426C	AAATTGGGATTGG		116	5	0.04	52	0	0				2	0	0.00			
CHFR	0	broad.mit.edu	37	12	133435706	133435707	+	Translation_Start_Site	INS	-	-	CAT	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	CHFR	NM_001161345	exon8	c.895_896insATG	p.E299delinsME	TCTCCTCCATCTT		103	7	0.07	65	0	0		83		31	0	0.00			
APEX1	328	broad.mit.edu	37	14	20923824	20923824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	APEX1	NM_080648	exon2	c.A20G	p.K7R	GGAAAAAGGGAGC		106	4	0.04	97	1	0.0103092784		23		274	1	0.00			
C14orf23	387978	hgsc.bcm.edu;bcgsc.ca	37	14	29242602	29242602	+	RNA	SNP	A	A	G	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	.	.	.	.	AGGAAAAGGATAT		66	4	0.06	70	0	0				0	0				
CDKL1	27109	broad.mit.edu	37	14	50798952	50798952	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	CDKL1	.	.	.	.	AGGTGGCAGGTAG		76	4	0.05	59	0	0		50		6	0	0.00			
.	0	broad.mit.edu	37	14	82384401	82384402	+	RNA	INS	-	-	A	rs199686389	by1000genomes	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	.	.	.	.	GAGCCAGAAAAAA		6	2	0.33	4	0	0				27	0	0.00			
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu	37	14	105409580	105409580	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_138420	exon7	c.12209delA	p.Q4070fs	CTATCTGGGGGCC		170	11	0.06	126	0	0				2	0	0.00			
GPR176	11245	mdanderson.org	37	15	40093937	40093937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_007223	exon3	c.C944A	p.A315E	GGGTTTGCCAGCA		45	3	0.07	43	0	0				15	0	0.00			
ZNF213	7760	mdanderson.org	37	16	3191187	3191187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001134655	exon6	c.G1219A	p.G407S	GACTGCGGCAAGA		47	3	0.06	28	0	0				21	0	0.00			
CD2BP2	10421	mdanderson.org	37	16	30365009	30365009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_006110	exon5	c.A488G	p.E163G	AGGAGCTCCAAAA		36	3	0.08	24	0	0				148	0	0.00			
PLLP	51090	mdanderson.org	37	16	57290893	57290893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_015993	exon4	c.A481G	p.S161G	GGTAGCTGAAGAA		33	3	0.09	23	0	0				64	0	0.00			
MINK1	50488	broad.mit.edu	37	17	4790982	4790982	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	MINK1	NM_170663	exon12	c.A1127T	p.Q376L	AGCTGCAGCAGCA		94	4	0.04	70	1	0.0142857143		110		35	0	0.00			
KDM6B	23135	broad.mit.edu	37	17	7751771	7751771	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	KDM6B	NM_001080424	exon11	c.A2165C	p.Q722P	CCCCCCAACCCCC		38	11	0.29	30	3	0.1		95		16	0	0.00			
NARR	0	mdanderson.org	37	17	27044263	27044263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001256281	exon1	c.C464T	p.A155V	CCCTCCGCACGGG		35	3	0.09	24	0	0				264	0	0.00			
FAM222B	55731	mdanderson.org	37	17	27085505	27085505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_018182	exon4	c.C1472A	p.P491H	GCCCCGGGAGCTG		36	3	0.08	23	0	0				26	0	0.00			
LOC440434	0	broad.mit.edu	37	17	36357182	36357182	+	Silent	SNP	T	T	C	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	.	.	.	.	AAACCATTGATGG		783	9	0.01	632	0	0				34	0	0.00			
THRA	7067	broad.mit.edu	37	17	38240101	38240101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	THRA_ENST00000450525,NS,carcinoma,0,2	THRA	NM_001190918	exon5	c.G236A	p.R79H	TTCGCCGCACAAT		169	5	0.03	144	1	0.0069444444		88	2	92	0	0.00			
NPLOC4	55666	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79589248	79589248	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_017921	exon3	c.C153G	p.N51K	GGTCTTGTTTCTA		75	6	0.08	68	0	0				17	4	0.24			
MUC16	94025	mdanderson.org	37	19	9033260	9033260	+	Silent	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_024690	exon10	c.C36366A	p.L12122L	TGAATAGAGGTAT		68	4	0.06	57	0	0				0	0				
PPAN	56342	mdanderson.org	37	19	10217274	10217274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_020230	exon2	c.C116T	p.T39M	GCTGCACGGGTCG		32	3	0.09	26	0	0				32	0	0.00			
ZNF708	7562	mdanderson.org	37	19	21476897	21476897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_021269	exon4	c.C871A	p.Q291K	AGGACTGTTTAAA		19	2	0.11	18	0	0				3	0	0.00			
FFAR2	2867	mdanderson.org	37	19	35940862	35940862	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	FFAR2,NS,carcinoma,0,1	FFAR2	NM_005306	exon1	c.C246T	p.C82C	CGTCTGCGCCCTC		42	3	0.07	47	0	0		0	1	0	0				
CATSPERG	57828	hgsc.bcm.edu	37	19	38858705	38858705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_021185	exon26	c.G2948T	p.W983L	TTATCTGGACCAC		81	4	0.05	64	0	0				1	0	0.00			
DYRK1B	9149	mdanderson.org	37	19	40321083	40321083	+	Missense_Mutation	SNP	G	G	T	rs367643250	alternate_allele	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_006483	exon4	c.C304A	p.R102S	CACTGCGCACGAT		49	3	0.06	45	0	0				31	0	0.00			
SHKBP1	92799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41094564	41094564	+	Silent	SNP	T	T	C	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_138392	exon14	c.T1371C	p.S457S	ATGGTCTGTGACT		125	17	0.14	79	0	0				160	11	0.07			
APOC4	346	mdanderson.org	37	19	45448465	45448465	+	Missense_Mutation	SNP	T	T	A	rs5167	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001646	exon3	c.T287A	p.L96H	GTCCGCTCACCAA		60	2	0.03	50	0	0				0	0				
RSPH6A	81492	mdanderson.org	37	19	46303719	46303719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_030785	exon5	c.C1901A	p.A634D	GCATAGGCATAGG		30	3	0.10	17	0	0				0	0				
KCNS3	3790	broad.mit.edu;mdanderson.org	37	2	18113148	18113148	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	KCNS3	NM_002252	exon3	c.C873T	p.I291I	CCAGATCCTACGG		126	5	0.04	90	0	0		85		5	0	0.00			
SOS1	6654	hgsc.bcm.edu	37	2	39237743	39237743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_005633	exon15	c.T2492C	p.L831P	AGAGTGAGGTTGG		67	4	0.06	57	0	0				8	0	0.00			
USP34	9736	broad.mit.edu	37	2	61610448	61610448	+	Silent	SNP	G	G	T	rs202087339	bycluster;by1000genomes;alternate_allele	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	USP34	NM_014709	exon6	c.C777A	p.P259P	GACAGCGGGAATA		318	4	0.01	239	0	0		334		1	0	0.00			
ACTR1B	10120	broad.mit.edu;mdanderson.org	37	2	98274702	98274702	+	Silent	SNP	G	G	A	rs146624887	bycluster;byfrequency;by1000genomes	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	ACTR1B	NM_005735	exon7	c.C735T	p.D245D	GCTGCCGTCTGGC		62	4	0.06	44	0	0		34		93	2	0.02			
KCNJ13	3769	broad.mit.edu	37	2	233635973	233635973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	KCNJ13	NM_001172416	exon2	c.G100A	p.A34T	TTTGAGCGCCATC		135	4	0.03	100	0	0		18		0	0				
SCLY	51540	mdanderson.org	37	2	239006909	239006909	+	Silent	SNP	C	C	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_016510	exon12	c.C1275T	p.S425S	GCTCAGCGTGGGC		43	3	0.07	42	0	0				10	0	0.00			
FRG1B	284802	bcgsc.ca	37	20	29623214	29623214	+	Missense_Mutation	SNP	C	C	T	rs367590609		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	FRG1B	.	.	.	.	TGCACTCGACAAT		250	28	0.11	220	10	0.0454545455		181		54	0	0.00			
NCOA6	23054	hgsc.bcm.edu	37	20	33345756	33345756	+	Silent	SNP	T	T	C	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	NCOA6,bladder,carcinoma,0,2	NCOA6	NM_014071	exon7	c.A795G	p.Q265Q	TTGTTGTTGCTGC		48	2	0.04	40	0	0		0	2	6	0	0.00			
LTN1	26046	mdanderson.org	37	21	30304979	30304979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_015565	exon28	c.C5021A	p.A1674D	GCTCGAGCTTTAA		46	3	0.07	37	0	0				18	0	0.00			
MIRLET7BHG	0	broad.mit.edu	37	22	46505875	46505875	+	Silent	SNP	A	A	G	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	.	.	.	.	AGGGGGAGGGCAC		76	3	0.04	60	1	0.0166666667				0	0				
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	22	46658494	46658494	+	Silent	SNP	G	G	A	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	PKDREJ,colon,carcinoma,0,1	PKDREJ	NM_006071	exon1	c.C726T	p.N242N	CGAGGCGTTGATG		65	8	0.12	55	0	0		0	1	1	0	0.00			
FANCD2	2177	ucsc.edu	37	3	10091153	10091153	+	Silent	SNP	C	C	T	rs6785756	bycluster;byfrequency	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	FANCD2	NM_001018115	exon17	c.C1509T	p.N503N	GTTAAACCCATCT		85	14	0.16	86	7	0.0813953488		253		7	4	0.57			
OSBPL10	114884	mdanderson.org	37	3	32022535	32022535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_017784	exon1	c.C137A	p.A46E	CCGGCCGCCGCCG		15	2	0.13	13	0	0				0	0				
MST1	4485	hgsc.bcm.edu	37	3	49723603	49723603	+	Missense_Mutation	SNP	G	G	A	rs199969873	bycluster;by1000genomes	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	MST1,NS,carcinoma,0,5	MST1	NM_020998	exon9	c.C1039T	p.R347W	GGTTCCGGCAGAA		68	10	0.15	44	1	0.0227272727	0.005	0	5	14	0	0.00			
SDHAP2	0	broad.mit.edu	37	3	195412514	195412515	+	RNA	INS	-	-	C	rs112711528		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	.	.	.	.	TTACAGTCCCCTG		7	3	0.43	7	2	0.2857142857				13	0	0.00			
OTOP1	133060	mdanderson.org	37	4	4204288	4204288	+	Nonsense_Mutation	SNP	G	G	T	rs150117288	bycluster;alternate_allele	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_177998	exon4	c.C617A	p.S206X	AACACCGAGTGGA		36	3	0.08	29	0	0				0	0				
FAM149A	25854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187084616	187084616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001006655	exon9	c.G872A	p.G291D	GGGCAGGTGCTCT		114	12	0.11	100	0	0				13	1	0.08			
EGFLAM	133584	broad.mit.edu	37	5	38438444	38438444	+	Missense_Mutation	SNP	C	C	T	rs200259259		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	EGFLAM	NM_001205301	exon17	c.C2351T	p.A784V	AGAATGCGGCCCA		188	6	0.03	158	0	0		302		28	0	0.00			
GZMK	3003	broad.mit.edu	37	5	54329635	54329635	+	Missense_Mutation	SNP	G	G	A	rs200562138	bycluster	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	GZMK,NS,carcinoma,0,1	GZMK	NM_002104	exon5	c.G676A	p.A226T	TTCCACGCTATAG		146	4	0.03	114	0	0		39	1	35	0	0.00			
NUDT12	83594	mdanderson.org	37	5	102887928	102887928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_031438	exon6	c.C1268A	p.T423N	TCTCTAGTGAACC		45	3	0.07	58	0	0				7	0	0.00			
CAMK4	814	mdanderson.org	37	5	110814164	110814164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001744	exon9	c.T787C	p.S263P	TTTATCTCCCCCT		44	3	0.07	34	1	0.0294117647				1	0	0.00			
CCDC112	153733	mdanderson.org	37	5	114612674	114612674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001040440	exon4	c.C439A	p.P147T	GTGTAGGCTTCAC		43	3	0.07	30	0	0				0	0				
APBB3	10307	mdanderson.org	37	5	139941994	139941994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_133172	exon5	c.C442A	p.Q148K	GCTGCTGGATACA		32	3	0.09	39	0	0				36	0	0.00			
F12	2161	mdanderson.org	37	5	176831071	176831071	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_000505	exon10	c.C1039T	p.Q347X	GCGGCTGCTCCCG		24	3	0.13	9	0	0				4	0	0.00			
BTN2A3P	0	broad.mit.edu	37	6	26422627	26422628	+	RNA	INS	-	-	A	rs34196747	bycluster;by1000genomes	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	.	.	.	.	ATTTTCCAAAAAA		9	4	0.44	8	0	0				0	0				
MUC21	394263	hgsc.bcm.edu	37	6	30954728	30954728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	MUC21,bladder,carcinoma,-1,1	MUC21	NM_001010909	exon2	c.A776G	p.E259G	ACTCTGAGTCCAG		70	6	0.09	35	1	0.0285714286		-1	1	0	0				
BAG6	7917	mdanderson.org	37	6	31608010	31608010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_004639	exon23	c.C3122T	p.A1041V	AGGTAGGCATCAC		77	4	0.05	72	0	0				611	1	0.00			
HLA-DMA	3108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32917166	32917166	+	Silent	SNP	G	G	A	rs371040586		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	HLA-DMA,NS,carcinoma,-1,2	HLA-DMA	NM_006120	exon4	c.C663T	p.N221N	CAGTGCGTTCCGG		66	11	0.17	65	0	0		-1	2	632	3	0.00			
ORC3	23595	mdanderson.org	37	6	88313102	88313102	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_012381	exon4	c.C178T	p.R60X	TTGTAGCGACTAC		41	3	0.07	40	0	0				21	0	0.00			
MCM7	4176	mdanderson.org	37	7	99693551	99693551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_005916	exon11	c.C1441A	p.R481S	AGCAGCGGGCATT		47	4	0.09	56	0	0				309	2	0.01			
SSPO	23145	broad.mit.edu;mdanderson.org	37	7	149510874	149510874	+	RNA	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_198455	exon71	c.G10159T	p.G3387C	CCTGACGGCTGCA		36	3	0.08	28	0	0				1	0	0.00			
CTSL2	1515	broad.mit.edu	37	9	99797977	99797977	+	Splice_Site	SNP	T	T	C	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	CTSL2	NM_001333	exon7	c.622-2A>G	.	TCATCCTTTTAAA		66	3	0.05	60	0	0		40		0	0				
GRIN3A	116443	mdanderson.org	37	9	104432598	104432598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_133445	exon3	c.G2096T	p.S699I	AATGGACTCTTCC		49	3	0.06	50	0	0				1	0	0.00			
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114134001	114134001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001080398	exon44	c.C5171T	p.A1724V	ATTGATGCCATGG		93	6	0.06	110	0	0				96	21	0.22			
NELFB	25920	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	140150039	140150039	+	Silent	SNP	G	G	A	rs201291926	bycluster;by1000genomes;alternate_allele	TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_015456	exon1	c.G78A	p.P26P	GGAGCCGCTCAAG		57	5	0.09	75	0	0				106	0	0.00			
CCDC120	90060	mdanderson.org	37	X	48922190	48922190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001163321	exon6	c.G719T	p.S240I	AGCTCAGCCAAGG		42	3	0.07	26	0	0				1	0	0.00			
SHROOM4	57477	bcgsc.ca;mdanderson.org	37	X	50438918	50438918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	SHROOM4	NM_020717	exon2	c.C137A	p.A46E	AAAGCTGCCTTGC		62	6	0.10	46	0	0		171		0	0				
GAB3	139716	mdanderson.org	37	X	153928305	153928305	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AALZ-01A-11D-A42Y-10	TCGA-2G-AALZ-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	20764d97-a509-4c5a-8ab1-fc15b82c0958	b79135a4-1369-4dd1-892e-f72cbed6242b	.	.	NM_001081573	exon5	c.C1099T	p.R367X	TGTCTCGGTGTCT		52	3	0.06	47	0	0				2	0	0.00			
