Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
FAM43B	163933	broad.mit.edu	37	1	20880268	20880270	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	GAG	GAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	FAM43B	NM_207334	exon1	c.802_804del	p.268_268del	GAGGACGAGGAGG		7	3	0.43	3	0	0		10		1	0	0.00			
SEC22B	9554	broad.mit.edu	37	1	145109290	145109306	+	RNA	DEL	AAAGAAAAAAAAAAACC	AAAGAAAAAAAAAAACC	-	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	AAAGAAAAAAAAAAACC	AAAGAAAAAAAAAAACC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	.	.	.	.	AAAAAAAAAGAAA		12	4	0.33	12	0	0				1	0	0.00			
LOR	4014	broad.mit.edu	37	1	153233515	153233515	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	LOR	NM_000427	exon2	c.C90T	p.G30G	CAGCGGCGGTGGT		90	4	0.04	54	0	0		19		0	0				
APOA1BP	128240	broad.mit.edu	37	1	156562379	156562379	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	APOA1BP	NM_144772	exon4	c.A433G	p.R145G	CCCAAAAGGCCTA		114	3	0.03	65	0	0		16		292	0	0.00			
DDX59	83479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	200618324	200618324	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_001031725	exon6	c.G1345C	p.V449L	CAAATACTAACAC		169	48	0.28	156	0	0				54	19	0.35			
.	0	broad.mit.edu	37	1	247401118	247401118	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	.	.	.	.	ATTTTTAATGACA		6	2	0.33	8	0	0				0	0				
OTUD1	220213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	23729299	23729299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_001145373	exon1	c.C913T	p.R305W	TATCTGCGGCAGA		43	10	0.23	59	0	0				15	4	0.27			
PPA1	5464	hgsc.bcm.edu	37	10	71969413	71969413	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	PPA1,NS,carcinoma,-1,1	PPA1	NM_021129	exon7	c.T540C	p.P180P	GTAGCCAGGTTTC		127	7	0.06	108	2	0.0185185185		-1	1	543	1	0.00			
PPRC1	23082	ucsc.edu	37	10	103904028	103904028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	PPRC1	NM_015062	exon7	c.C3572T	p.P1191L	CTCCTCCGGCTCC		40	4	0.10	45	0	0		151		109	0	0.00			
VWA2	340706	broad.mit.edu;bcgsc.ca	37	10	116050067	116050067	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	VWA2	NM_001272046	exon13	c.A2191G	p.N731D	CTGCAGAATGGGA		45	4	0.09	49	0	0		64		4	0	0.00			
KRTAP5-10	387273	broad.mit.edu	37	11	71276851	71276851	+	Missense_Mutation	SNP	A	A	G	rs201070584	byfrequency	TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	KRTAP5-10,NS,carcinoma,-1,1	KRTAP5-10	NM_001012710	exon1	c.A218G	p.D73G	AGGGGGACTGTGG		37	8	0.22	46	12	0.2608695652		37	1	0	0				
ATN1	1822	hgsc.bcm.edu	37	12	7045915	7045915	+	Missense_Mutation	SNP	G	G	T	rs148885085	bycluster;byfrequency;alternate_allele	TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	ATN1,colon,carcinoma,0,1	ATN1	NM_001007026	exon5	c.G1485T	p.Q495H	GCAGCAGCAGCAG		190	9	0.05	44	1	0.0227272727		0	1	497	1	0.00			
LMO3	55885	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	16713458	16713458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_001243613	exon5	c.C287A	p.T96K	TTTCCCGTTACAC		247	14	0.06	83	0	0				4	1	0.25			
DDX11	1663	broad.mit.edu	37	12	31238044	31238044	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	DDX11	NM_030653	exon5	c.622delA	p.K208fs	GAGGAGAAAAAGG		805	8	0.01	178	0	0		188		268	0	0.00			
KRT72	140807	broad.mit.edu;bcgsc.ca	37	12	52985290	52985290	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	KRT72	NM_001146225	exon5	c.C921A	p.A307A	CTTTAGGGCAATC		110	32	0.29	74	0	0		70		1	1	1.00			
ANAPC5	51433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	121775139	121775139	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_016237	exon6	c.G714A	p.K238K	TAATTCCTTCTGC		53	30	0.57	62	0	0				154	102	0.66			
IRS2	8660	hgsc.bcm.edu;broad.mit.edu	37	13	110435932	110435932	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_003749	exon1	c.C2469A	p.Y823X	GAGCACGTACTGG		57	16	0.28	64	0	0				11	8	0.73			
.	144	bcgsc.ca	37	13	111591851	111591851	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	.	.	.	.	TTAATCCTGTCGG		16	4	0.25	27	0	0				0	0				
MAPK1IP1L	93487	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	55529374	55529374	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	MAPK1IP1L	NM_144578	exon3	c.C57T	p.T19T	CAAAACCTCTGCT		72	28	0.39	70	1	0.0142857143		14		227	100	0.44			
DYNC1H1	1778	broad.mit.edu	37	14	102496591	102496591	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	DYNC1H1	NM_001376	exon51	c.G9855T	p.V3285V	TAAGGTGGAACCT		54	3	0.06	78	0	0		395		187	0	0.00			
CCDC78	124093	ucsc.edu	37	16	772996	772996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	CCDC78	NM_001031737	exon13	c.G1223A	p.S408N	CAGCAGCTGTGCC		41	4	0.10	32	0	0		26		25	0	0.00			
SMG1	23049	broad.mit.edu	37	16	18844328	18844328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	SMG1	NM_015092	exon51	c.C8726A	p.A2909D	AAGTAGGCCTGAA		172	4	0.02	126	0	0		401		28	0	0.00			
CCDC102A	92922	ucsc.edu	37	16	57552624	57552624	+	Silent	SNP	G	G	A	rs141241860	bycluster;byfrequency;by1000genomes	TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	CCDC102A	NM_033212	exon5	c.C951T	p.D317D	CAGCTCGTCCTGG		33	4	0.12	30	0	0		22		35	0	0.00			
BAHCC1	57597	ucsc.edu	37	17	79410887	79410887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	BAHCC1	.	.	.	.	GGAGGAGAGGACG		22	4	0.18	11	0	0		110		0	0				
LIG1	3978	bcgsc.ca	37	19	48634358	48634358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	LIG1	NM_000234	exon19	c.C1796A	p.P599Q	ATGTCCGGGTACT		45	4	0.09	51	0	0		151		305	0	0.00			
MYH14	79784	ucsc.edu	37	19	50764815	50764815	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	MYH14	NM_001145809	exon21	c.G2508T	p.L836L	CCAGCTGGAAGAG		39	4	0.10	25	0	0		261		35	0	0.00			
CEACAM18	729767	bcgsc.ca	37	19	51983738	51983738	+	Silent	SNP	C	C	T	rs61746204	bycluster;by1000genomes	TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	CEACAM18	NM_001080405	exon3	c.C387T	p.S129S	CGACAGCGCAGGA		90	5	0.06	80	0	0		96		0	0				
GCKR	2646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27730108	27730108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	GCKR,rectum,carcinoma,0,1	GCKR	NM_001486	exon13	c.G1073A	p.R358Q	ATTTCCGAGATGT		66	18	0.27	49	0	0		0	1	0	0				
ZAK	0	broad.mit.edu	37	2	174130916	174130916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	ZAK	NM_016653	exon20	c.C1841T	p.A614V	CTGCTGCTGTGAG		114	5	0.04	101	0	0		62		7	0	0.00			
WNT6	7475	broad.mit.edu	37	2	219724790	219724792	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	GCT	GCT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	WNT6	NM_006522	exon1	c.30_32del	p.10_11del	CCTCGGGCTGCTG		11	4	0.36	4	0	0		21		4	0	0.00			
TPTEP1	0	broad.mit.edu	37	22	17127506	17127507	+	RNA	INS	-	-	A	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	.	.	.	.	CCTAGAGAAAAAA		6	2	0.33	4	0	0				0	0				
GGT3P	0	broad.mit.edu	37	22	18775534	18775535	+	RNA	INS	-	-	T	rs200142078	by1000genomes	TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	.	.	.	.	CTTTCTCTTTTTT		39	0	0.00	40	3	0.075				0	0				
TANGO2	0	ucsc.edu;bcgsc.ca	37	22	20043537	20043537	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	TANGO2	NM_152906	exon6	c.451+1G>T	.	CGCCAGGTGAGCC		36	4	0.11	35	0	0		4		0	0				
RAD54L2	23132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	51694124	51694124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_015106	exon21	c.G3399A	p.M1133I	TCGGATGGCTGCC		156	36	0.23	108	0	0				17	8	0.47			
.	0	broad.mit.edu	37	3	159818946	159818946	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	.	.	.	.	AGAAAAAGACCTC		125	4	0.03	101	0	0				10	0	0.00			
.	0	broad.mit.edu	37	3	159820488	159820488	+	RNA	SNP	C	C	T	rs6778335	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	.	.	.	.	TTCCCCCGTCATG		77	4	0.05	72	0	0				21	0	0.00			
OTUD4	54726	hgsc.bcm.edu	37	4	146059041	146059041	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	OTUD4,bladder,carcinoma,0,2	OTUD4	NM_001102653	exon21	c.T2691C	p.H897H	GGGAGGATGAGCC		77	4	0.05	80	1	0.0125		0	2	32	0	0.00			
FLT4	2324	broad.mit.edu;ucsc.edu	37	5	180052904	180052904	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	FLT4	NM_182925	exon10	c.C1386A	p.P462P	TGTCCAGGGCCGC		44	4	0.09	55	0	0		356		2	0	0.00			
MUC21	394263	hgsc.bcm.edu	37	6	30955043	30955043	+	Missense_Mutation	SNP	G	G	A	rs9262385	bycluster;byfrequency	TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	MUC21,NS,neuroblastoma,0,1	MUC21	NM_001010909	exon2	c.G1091A	p.G364E	ACTCTGGGTCCAG		22	2	0.09	20	2	0.1	0.008	0	1	0	0				
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51612794	51612794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_170724	exon58	c.C9620T	p.A3207V	CTGGTGGCCACAA		180	52	0.29	110	0	0				0	0				
ARMC2	84071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	109274550	109274550	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_032131	exon13	c.G1911A	p.T637T	GACCACGCTGGGT		17	7	0.41	11	0	0				2	0	0.00			
INHBA-AS1	0	broad.mit.edu	37	7	41797976	41797976	+	RNA	DEL	T	T	-	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	.	.	.	.	CACTGATTTTTTT		6	2	0.33	8	0	0				0	0				
MTERF	7978	broad.mit.edu	37	7	91503609	91503609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	MTERF	NM_006980	exon3	c.T499C	p.F167L	GAAAAAAGGATTC		106	4	0.04	76	0	0		32		39	0	0.00			
GIGYF1	64599	ucsc.edu	37	7	100282144	100282144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	GIGYF1	NM_022574	exon13	c.C1558T	p.P520S	CCAGCGGCTGGAA		42	4	0.10	35	0	0		113		172	0	0.00			
ZNF398	57541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	148863275	148863275	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	NM_170686	exon3	c.C446G	p.S149C	ATGTCTCCATCTA		144	41	0.28	123	0	0				106	26	0.25			
ST18	9705	broad.mit.edu	37	8	53062411	53062411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	ST18	NM_014682	exon16	c.T1933C	p.F645L	TTTTGAATGGGGA		140	3	0.02	73	0	0		212		0	0				
PTENP1	0	broad.mit.edu;bcgsc.ca	37	9	33675590	33675590	+	RNA	SNP	G	G	C	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	.	.	.	.	TTGACGGCTCCTC		247	8	0.03	233	0	0				52	0	0.00			
FAM205B	0	broad.mit.edu	37	9	34832997	34832997	+	RNA	SNP	C	C	T	rs77983392		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	FAM205B	.	.	.	.	AAGCTACGGCTCC		51	5	0.10	57	1	0.0175438596		10		0	0				
PGM5P2	0	broad.mit.edu	37	9	69082095	69082095	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	.	.	.	.	AATATCAATTTTA		25	6	0.24	36	3	0.0833333333				0	0				
.	84443	bcgsc.ca	37	X	106846480	106846480	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAM2-01A-11D-A435-10	TCGA-2G-AAM2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	41feee46-1a42-47e4-9136-5346983071dc	7ec717b0-6a59-4bee-b5f7-b9b0ba2313bb	.	.	.	.	.	.	ACAACAGCAGCAG		126	7	0.06	81	0	0				16	0	0.00			
