Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
TMEM51-AS1	200197	hgsc.bcm.edu	37	1	15439098	15439098	+	RNA	SNP	C	C	T	rs114844404	bycluster	TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	.	.	.	.	TTTTCTCCTCCCG		76	37	0.49	89	0	0				2	0	0.00			
MST1P2	11209	bcgsc.ca	37	1	16976670	16976670	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	.	.	.	.	GCCAGCCGTCTTC		486	75	0.15	593	44	0.0741989882				9	2	0.22			
C1orf194	127003	hgsc.bcm.edu	37	1	109650648	109650648	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001122961	exon2	c.T57A	p.Y19X	GTTCTTATATGGC		62	7	0.11	70	0	0				2	1	0.50			
DENND1B	163486	hgsc.bcm.edu	37	1	197704897	197704897	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001195216	exon3	c.C112G	p.P38A	CAGGGGGAATCCT		47	16	0.34	47	0	0				3	1	0.33			
IKBKE	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	206650044	206650044	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	IKBKE	NM_001193322	exon7	c.G564A	p.A188A	GCGGGCGGTGCTT		95	5	0.05	96	0	0		77		4	0	0.00			
JMJD1C	221037	mdanderson.org	37	10	64946050	64946050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_032776	exon19	c.C6664A	p.L2222I	TCAGGAGATCAGC		41	3	0.07	72	0	0				36	0	0.00			
RRP12	23223	mdanderson.org	37	10	99126540	99126540	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_015179	exon27	c.G3174A	p.E1058E	CTCCTCCTCTTCT		64	4	0.06	63	0	0				13	0	0.00			
NRAP	4892	mdanderson.org	37	10	115385817	115385817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001261463	exon21	c.C2233A	p.L745I	TCTGTAGCTCCTG		43	3	0.07	69	0	0				0	0				
MUC2	4583	hgsc.bcm.edu	37	11	1092602	1092619	+	In_Frame_Del	DEL	CCACCACTCCCAGCCCTC	CCACCACTCCCAGCCCTC	-	rs201595190		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	CCACCACTCCCAGCCCTC	CCACCACTCCCAGCCCTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	MUC2	NM_002457	exon30	c.4420_4437del	p.1474_1479del	CTCCAACCACCAC		119	21	0.18	145	0	0		614		6	0	0.00			
STK33	65975	mdanderson.org	37	11	8474400	8474400	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_030906	exon9	c.G840A	p.L280L	GGCCTGCAGCATG		72	4	0.06	93	0	0				9	0	0.00			
MAP3K11	4296	mdanderson.org	37	11	65380520	65380520	+	Silent	SNP	G	G	A	rs144950486	bycluster;by1000genomes	TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_002419	exon1	c.C708T	p.P236P	GATGACGGGCACC		47	3	0.06	94	0	0	0			84	0	0.00			
GPR152	390212	mdanderson.org	37	11	67219522	67219522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_206997	exon1	c.G674A	p.R225H	TGTTGGCGGTGGC		33	3	0.09	28	0	0				0	0				
LRP5	4041	mdanderson.org	37	11	68192718	68192718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_002335	exon15	c.G3385T	p.V1129L	TTCTGGGTGGACG		16	2	0.13	25	0	0				66	0	0.00			
OAF	220323	bcgsc.ca	37	11	120082052	120082052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	OAF	NM_178507	exon1	c.C65A	p.P22Q	TCGCGCCGCTGCT		20	4	0.20	17	0	0		12		3	0	0.00			
VSIG2	23584	mdanderson.org	37	11	124619760	124619760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_014312	exon4	c.C430A	p.P144T	TGGGGGGAACTGC		29	2	0.07	41	0	0				84	0	0.00			
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6127718	6127718	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_000552	exon28	c.C4866T	p.D1622D	CTGGATGTCTCCA		378	39	0.10	131	0	0				194	0	0.00			
ATN1	1822	mdanderson.org	37	12	7045915	7045915	+	Silent	SNP	G	G	A	rs148885085	bycluster;byfrequency	TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	ATN1,colon,carcinoma,0,1	ATN1	NM_001007026	exon5	c.G1485A	p.Q495Q	GCAGCAGCAGCAG		180	6	0.03	75	1	0.0133333333	0	0	1	533	1	0.00			
ZDHHC17	23390	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	77209655	77209655	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	ZDHHC17	NM_015336	exon7	c.G627A	p.L209L	TAGATTGCTTTTA		333	93	0.28	339	1	0.0029498525		45		2	1	0.50			
KL	9365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33638015	33638015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_004795	exon5	c.G2731A	p.G911R	CTTTGCGGATACT		138	25	0.18	175	0	0				3	2	0.67			
UGGT2	55757	mdanderson.org	37	13	96530037	96530037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_020121	exon28	c.C3302A	p.T1101K	TGTTCTGTCACTT		36	3	0.08	73	0	0				11	0	0.00			
C14orf159	80017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	91655323	91655323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001102368	exon9	c.C1004T	p.A335V	CCCATGCCCGCTC		87	17	0.20	106	0	0				84	17	0.20			
BDKRB2	624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96707057	96707057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	BDKRB2,NS,carcinoma,0,1	BDKRB2	NM_000623	exon3	c.G392A	p.R131H	TCTGCCGCGTGGT		46	9	0.20	42	0	0		0	1	2	2	1.00			
LIPC	3990	mdanderson.org	37	15	58834136	58834136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_000236	exon3	c.G426T	p.K142N	GGGCAAGGAGGTC		30	3	0.10	32	0	0				4	0	0.00			
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63935695	63935695	+	Missense_Mutation	SNP	T	T	C	rs375304469		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_003922	exon58	c.A11239G	p.I3747V	GAGTGATGTGTCC		295	92	0.31	358	0	0				10	4	0.40			
TBL3	10607	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	2024635	2024635	+	Missense_Mutation	SNP	G	G	T	rs138822494	alternate_allele	TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	TBL3	NM_006453	exon5	c.G334T	p.V112L	GCCCCCGTGGCCA		74	5	0.07	53	0	0		54		62	0	0.00			
BCL7C	9274	mdanderson.org	37	16	30905198	30905198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_004765	exon1	c.C68T	p.A23V	ATGGTCGCCATCA		40	3	0.08	45	0	0				297	1	0.00			
IRX6	79190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	55363165	55363165	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_024335	exon5	c.G1275T	p.A425A	CTGTGCGCCGTGC		65	15	0.23	60	0	0				9	2	0.22			
MTSS1L	92154	mdanderson.org	37	16	70698197	70698197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_138383	exon15	c.C1627T	p.P543S	CGGTGGGCAGCCC		14	2	0.14	32	0	0				31	0	0.00			
ANKRD11	29123	mdanderson.org	37	16	89346584	89346584	+	Missense_Mutation	SNP	G	G	T	rs202049186	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_013275	exon9	c.C6366A	p.D2122E	GAAGGCGTCCGCC		22	2	0.09	42	0	0				44	0	0.00			
MYBBP1A	10514	broad.mit.edu	37	17	4458537	4458537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	MYBBP1A	NM_014520	exon1	c.T83C	p.L28P	TTCAATAGGCCAT		115	3	0.03	90	0	0		69		20	0	0.00			
CAMTA2	23125	mdanderson.org	37	17	4873732	4873732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001171167	exon17	c.C2977T	p.R993W	GCTCCCGCATTGA		70	4	0.06	66	0	0				74	0	0.00			
NLGN2	57555	mdanderson.org	37	17	7311738	7311738	+	Missense_Mutation	SNP	G	G	T	rs377690737		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	NLGN2,NS,lymphoid_neoplasm,+1,1	NLGN2	NM_020795	exon1	c.G164T	p.R55L	GTGTGCGGCGCGA		27	3	0.11	29	0	0		1	1	1	0	0.00			
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		177	10	0.06	221	9	0.0407239819				21	7	0.33			
MAPK7	5598	broad.mit.edu	37	17	19285118	19285118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	MAPK7,NS,carcinoma,0,2	MAPK7	NM_002749	exon5	c.C1502A	p.A501D	TGGAGGCTCCTGA		62	6	0.10	48	1	0.0208333333		72	2	76	4	0.05			
FLJ36000	0	hgsc.bcm.edu	37	17	21906338	21906338	+	RNA	SNP	G	G	C	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	.	.	.	.	TCCCACGGTTGTC		57	4	0.07	49	0	0				0	0				
CRLF3	51379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29123252	29123252	+	Missense_Mutation	SNP	C	C	T	rs368117589	alternate_allele	TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_015986	exon4	c.G529A	p.V177I	ATGCTACTGTTCC		94	22	0.23	100	0	0				14	3	0.21			
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29162850	29162850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_024857	exon2	c.G1751T	p.S584I	AAGCCAGCTTGCT		112	16	0.14	119	0	0				2	0	0.00			
.	0	broad.mit.edu	37	17	30419203	30419204	+	RNA	DEL	CA	CA	-	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	CA	CA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	.	.	.	.	TGCAAGCACACAC		6	2	0.33	6	0	0				0	0				
GNA13	10672	mdanderson.org	37	17	63052637	63052637	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_006572	exon1	c.C75A	p.A25A	CTGCTCGGCCTCG		41	3	0.07	45	0	0				17	0	0.00			
OTOP3	347741	bcgsc.ca	37	17	72931942	72931942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	OTOP3	NM_178233	exon1	c.A46G	p.R16G	TGGGGGAGGGCGT		35	4	0.11	31	0	0		64		0	0				
ZSWIM4	65249	mdanderson.org	37	19	13915706	13915706	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_023072	exon3	c.C456A	p.S152S	CACGTCCGTGAGC		43	3	0.07	70	0	0				5	0	0.00			
ATP1A3	478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42474678	42474678	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001256214	exon17	c.C2319T	p.D773D	TAGGTTGTCGAAG		91	29	0.32	104	0	0				0	0				
ZNF574	64763	bcgsc.ca	37	19	42584137	42584155	+	Frame_Shift_Del	DEL	CCGCTGCCCCAGGCACCTA	CCGCTGCCCCAGGCACCTA	-	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	CCGCTGCCCCAGGCACCTA	CCGCTGCCCCAGGCACCTA					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	ZNF574	NM_022752	exon2	c.1379_1397del	p.460_466del	CAGGGCCCGCTGC		55	5	0.09	59	0	0		57		23	0	0.00			
MZF1	7593	mdanderson.org	37	19	59074032	59074032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_003422	exon6	c.G1612A	p.E538K	GCCGCTCGCCACT		10	2	0.20	10	0	0				13	0	0.00			
DNAJC27	51277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25174379	25174379	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_016544	exon6	c.A573G	p.K191K	AGGGCGTTTCCCG		81	15	0.19	95	0	0				3	1	0.33			
XDH	7498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	31620583	31620583	+	Missense_Mutation	SNP	C	C	T	rs148108999	bycluster;by1000genomes	TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_000379	exon6	c.G446A	p.R149H	GTGCAGCGGCACA		88	12	0.14	100	0	0	0			1	1	1.00			
ZNF638	27332	hgsc.bcm.edu;bcgsc.ca	37	2	71607352	71607355	+	In_Frame_Del	DEL	AACA	AACA	-	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	AACA	AACA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	ZNF638	NM_001252612	exon9	c.2266_2268del	p.756_756del	ACGTAGAACAAAG		266	66	0.25	298	0	0		179		6	0	0.00			
LRP2	4036	broad.mit.edu	37	2	170038126	170038126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	LRP2	NM_004525	exon52	c.A10001G	p.Y3334C	TAGAGGTACCTGT		143	4	0.03	139	0	0		751		1	0	0.00			
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197791204	197791204	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_024989	exon1	c.C137G	p.P46R	TACTCCGGGTACT		203	37	0.18	206	0	0				2	1	0.50			
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47588957	47588957	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	ARFGEF2,NS,carcinoma,0,1	ARFGEF2	NM_006420	exon11	c.G1520C	p.C507S	GGATCTGTGCAGG		96	11	0.11	85	0	0		0	1	4	1	0.25			
WDR4	10785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44273835	44273835	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_018669	exon9	c.G819A	p.L273L	GGCGTCCAGCTGG		48	6	0.13	36	0	0				15	3	0.20			
ITGB2	3689	mdanderson.org	37	21	46308737	46308737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001127491	exon14	c.C1951A	p.Q651K	ACAGCTGCAGGCC		48	3	0.06	39	0	0				71	0	0.00			
MYO18B	84700	ucsc.edu	37	22	26239830	26239830	+	Missense_Mutation	SNP	G	G	T	rs377148843		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	MYO18B	NM_032608	exon18	c.G3337T	p.D1113Y	GCCCTGGATGCAC		39	4	0.10	41	0	0		322		0	0				
GAS2L1	10634	mdanderson.org	37	22	29706886	29706886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_152237	exon5	c.G908T	p.R303L	GTCCCCGCCCTGC		24	3	0.13	34	0	0				27	0	0.00			
FBLN1	2192	mdanderson.org	37	22	45927186	45927186	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_006486	exon5	c.C526T	p.L176L	CCATATCTGAATG		44	3	0.07	39	0	0				457	0	0.00			
.	730211	bcgsc.ca	37	3	183834416	183834416	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	.	.	.	.	GCTTGACCAATAA		31	15	0.48	26	0	0				0	0				
IDUA	3425	mdanderson.org	37	4	997352	997352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_000203	exon12	c.G1666T	p.A556S	CTCCGCGCCCTGC		35	3	0.09	60	0	0				47	0	0.00			
PPARGC1A	10891	broad.mit.edu	37	4	23830066	23830066	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	PPARGC1A,NS,malignant_melanoma,-1,2	PPARGC1A	NM_013261	exon5	c.C714A	p.S238S	CTTTTTGGAGGTG		177	4	0.02	239	0	0		129	2	0	0				
LNX1-AS1	100873939	hgsc.bcm.edu	37	4	54373461	54373461	+	RNA	SNP	A	A	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	.	.	.	.	CCATCCAGCCTTA		63	20	0.32	79	0	0				0	0				
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	94006231	94006232	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	CG	CG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	GRID2	NM_001510	exon3	c.329_330del	p.110_110del	GGCAGACGCCATG		63	23	0.37	100	0	0		233		0	0				
OTUD4	54726	hgsc.bcm.edu	37	4	146059041	146059041	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	OTUD4,bladder,carcinoma,0,2	OTUD4	NM_001102653	exon21	c.T2691C	p.H897H	GGGAGGATGAGCC		101	6	0.06	112	1	0.0089285714		0	2	11	0	0.00			
MIER3	166968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	56219302	56219302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_152622	exon13	c.G1303A	p.V435I	TTACAACAGGCAC		96	14	0.15	116	0	0				6	1	0.17			
POLK	51426	broad.mit.edu	37	5	74892821	74892821	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	POLK	NM_016218	exon13	c.T2303C	p.L768S	CTTACTTATGTGA		73	4	0.05	118	0	0		123		6	0	0.00			
RPS14	6208	mdanderson.org	37	5	149823857	149823857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001025070	exon5	c.C448A	p.R150S	ACAGACGGCGACC		40	3	0.08	36	0	0				2057	3	0.00			
FLT4	2324	mdanderson.org	37	5	180038336	180038336	+	Silent	SNP	G	G	T	rs140710164	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	FLT4_ENST00000261937,NS,carcinoma,0,4	FLT4_ENST00000261937	NM_182925	exon27	c.C3681A	p.A1227A	CCTGGCGGCCAGG		43	3	0.07	58	0	0		0	4	27	0	0.00			
JARID2	3720	broad.mit.edu;mdanderson.org	37	6	15501152	15501152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	JARID2	NM_004973	exon8	c.G1960A	p.D654N	GAGCTCGACCTGG		74	4	0.05	57	0	0		135		16	1	0.06			
BEND3	57673	mdanderson.org	37	6	107390566	107390566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001080450	exon5	c.G1829A	p.R610H	TTGATGCGGGAGG		49	3	0.06	58	0	0				4	0	0.00			
.	0	broad.mit.edu	37	7	128210684	128210685	+	RNA	INS	-	-	T	rs201622560	by1000genomes	TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	.	.	.	.	CCATGACCATCCT		12	5	0.42	9	0	0				0	0				
.	0	broad.mit.edu	37	7	128210686	128210687	+	RNA	DEL	AT	AT	-	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	AT	AT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	.	.	.	.	ATGACCATCCTCC		11	5	0.45	8	0	0				0	0				
FAM150A	389658	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	53477732	53477732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	FAM150A	NM_207413	exon1	c.C85T	p.P29S	CCCGGGGCCTCCC		66	8	0.12	49	0	0		6		2	0	0.00			
VPS13B	157680	broad.mit.edu	37	8	100866473	100866473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	VPS13B	NM_017890	exon56	c.T10931C	p.L3644P	GGGCCCTTTTTAG		109	4	0.04	84	0	0		811		13	0	0.00			
TATDN1	83940	broad.mit.edu	37	8	125520718	125520718	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	TATDN1	NM_032026	exon8	c.A513G	p.G171G	TACCACTCCCCCT		365	8	0.02	290	1	0.0034482759		29		60	0	0.00			
GSDMD	79792	mdanderson.org	37	8	144644686	144644686	+	Nonsense_Mutation	SNP	G	G	T	rs144173624	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001166237	exon13	c.G1207T	p.E403X	CCGCTCGAGCTGG		39	3	0.08	24	0	0				237	0	0.00			
EPPK1	83481	mdanderson.org	37	8	144940666	144940666	+	Silent	SNP	G	G	A	rs368004220		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	EPPK1,NS,carcinoma,0,2	EPPK1	NM_031308	exon1	c.C6756T	p.G2252G	CAGCACGCCCTTC		62	5	0.08	49	1	0.0204081633		0	2	86	5	0.06			
PRUNE2	158471	ucsc.edu;bcgsc.ca	37	9	79253165	79253165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	PRUNE2	NM_015225	exon13	c.C8768A	p.A2923D	CAGGCGGCAAACA		29	4	0.14	50	0	0		331		12	0	0.00			
GKAP1	80318	mdanderson.org	37	9	86403589	86403589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	GKAP1,rectum,carcinoma,0,1	GKAP1	NM_001135953	exon5	c.C365A	p.T122K	TCAGATGTCAGCT		45	3	0.07	48	0	0		0	1	12	0	0.00			
TNC	3371	bcgsc.ca;mdanderson.org	37	9	117846507	117846507	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	TNC	NM_002160	exon4	c.C2112A	p.V704V	GGCGCTGACAGGA		55	5	0.09	70	0	0		282		14	0	0.00			
IER5L	389792	mdanderson.org	37	9	131940157	131940157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_203434	exon1	c.C175A	p.Q59K	GCTGCTGGCGCCG		24	3	0.13	39	0	0				64	0	0.00			
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135171355	135171355	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_015046	exon15	c.C6010G	p.L2004V	ACACGAGGACACG		84	43	0.51	118	0	0				14	7	0.50			
C9orf172	389813	mdanderson.org	37	9	139741764	139741764	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	NM_001080482	exon1	c.G2898A	p.V966V	CTGGGTGGCCAGC		24	3	0.13	29	0	0				1	0	0.00			
FAM47C	442444	broad.mit.edu	37	X	37028425	37028425	+	Missense_Mutation	SNP	A	A	G	rs145580328		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	FAM47C	NM_001013736	exon1	c.A1942G	p.N648D	CCTCCCAATACTG		123	5	0.04	109	1	0.0091743119		267		0	0				
.	84443	bcgsc.ca	37	X	106846480	106846480	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	.	.	.	.	ACAACAGCAGCAG		201	7	0.03	119	3	0.025210084				0	0				
.	286544	bcgsc.ca	37	Y	14107793	14107793	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAM3-01A-11D-A435-10	TCGA-2G-AAM3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10f7b131-38a9-4636-87e4-f0556ade7b0f	fe8b69d7-9bb8-469d-a362-9b55620b0e07	.	.	.	.	.	.	GTGATCGCCTATC		46	12	0.26	85	0	0				0	0				
