Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
PHC2	1912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33832793	33832793	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_198040	exon6	c.G900A	p.V300V	CCCTGGCACACTG		82	23	0.28	126	0	0				2	1	0.50			
CYP4Z2P	0	broad.mit.edu	37	1	47325212	47325212	+	RNA	SNP	G	G	A	rs71645846		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	.	.	.	.	AGAATGGCCCTAG		90	4	0.04	111	1	0.009009009				0	0				
ARID4B	51742	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	235345258	235345258	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_016374	exon20	c.C2976T	p.V992V	ACTATCGACATTG		106	6	0.06	111	0	0				42	3	0.07			
LGALS8	3964	broad.mit.edu	37	1	236706865	236706865	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	LGALS8	NM_006499	exon10	c.G681A	p.L227L	GAGGCTGCCATTC		115	4	0.03	129	0	0		42		85	0	0.00			
PARD3	56288	broad.mit.edu;mdanderson.org	37	10	34408663	34408663	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	PARD3	NM_019619	exon24	c.C3555G	p.N1185K	CCGTGCGTTCGGC		50	3	0.06	76	0	0		131		80	5	0.06			
TYSND1	219743	broad.mit.edu	37	10	71905245	71905245	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	TYSND1	NM_001040273	exon1	c.1098delT	p.L366fs	CACTACAAGGCGG		19	9	0.47	16	0	0		20		27	0	0.00			
CDHR1	92211	mdanderson.org	37	10	85965594	85965594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001171971	exon10	c.G874T	p.A292S	GATGGAGCCTTTG		40	3	0.08	54	0	0				5	0	0.00			
TRPM5	29850	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	2436203	2436203	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_014555	exon10	c.G1554A	p.W518X	GTCCCGCCAGGGG		19	7	0.37	14	0	0				0	0				
SMPD1	6609	broad.mit.edu;mdanderson.org	37	11	6415755	6415755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	SMPD1	NM_000543	exon6	c.G1814T	p.S605I	CTGACAGCCCTGC		38	3	0.08	66	0	0		108		63	0	0.00			
ABCC8	6833	mdanderson.org	37	11	17452468	17452468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_000352	exon12	c.C1710A	p.D570E	CGAGAAGTCGGCC		39	3	0.08	68	0	0				0	0				
PTPMT1	114971	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	47587435	47587435	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001143984	exon1	c.G261T	p.L87L	TTTGCTGAGCCAC		129	59	0.46	139	0	0				22	7	0.32			
FADS3	3995	mdanderson.org	37	11	61645045	61645045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_021727	exon7	c.C823T	p.L275F	GGGTGAGCAGCGG		25	3	0.12	34	0	0				259	0	0.00			
DPP3	10072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66276583	66276583	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	DPP3	NM_130443	exon18	c.2074delT	p.S692fs	AGGCGTCAGCTGC		53	20	0.38	59	0	0		61		168	0	0.00			
DPP3	10072	hgsc.bcm.edu	37	11	66276583	66276584	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	CA	CA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	DPP3	NM_130443	exon18	c.2074_2075del	p.692_692del	AGGCGTCAGCTGC		53	0	0.00	59	0	0		61		168	0	0.00			
DPP3	10072	bcgsc.ca	37	11	66276584	66276584	+	Silent	SNP	A	A	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	DPP3	NM_130443	exon18	c.A2076T	p.S692S	GGCGTCAGCTGCT		53	21	0.40	59	0	0		61		173	6	0.03			
CPT1A	1374	mdanderson.org	37	11	68530187	68530187	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001876	exon15	c.C1783A	p.R595R	AGAGCCGGGTCAT		43	3	0.07	65	0	0				117	0	0.00			
ARHGAP32	9743	mdanderson.org	37	11	128910825	128910825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001142685	exon10	c.C1001A	p.P334Q	TCACCTGGTTTTG		48	3	0.06	59	0	0				0	0				
ADAMTS8	11095	mdanderson.org	37	11	130286846	130286846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	ADAMTS8_ENST00000414575,NS,carcinoma,0,3	ADAMTS8_ENST00000414575	NM_007037	exon3	c.C1085T	p.A362V	TCATGGGCCAGGG		49	3	0.06	87	0	0		0	3	7	0	0.00			
FOXM1	2305	broad.mit.edu	37	12	2973635	2973635	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	FOXM1	NM_021953	exon8	c.C1117A	p.R373R	TGACCCGTGGTAG		286	5	0.02	127	0	0		62		669	0	0.00			
PRH1	5554	broad.mit.edu	37	12	11035035	11035035	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	PRH1	NM_006250	exon4	c.T300C	p.H100H	AGGGGGATGGCCT		1080	10	0.01	423	2	0.0047281324		17		19	0	0.00			
PRB1	5542	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	11506146	11506146	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	PRB1	NM_199353	exon4	c.T492C	p.P164P	TGCTGGAGGTGGG		1753	67	0.04	683	1	0.0014641288		33		0	0				
WBP11	51729	broad.mit.edu	37	12	14947586	14947586	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	WBP11,right_lower_lobe,carcinoma,0,2	WBP11	NM_016312	exon7	c.T606C	p.P202P	AGGGGGAGGGCCA		481	7	0.01	198	1	0.0050505051		66	2	931	1	0.00			
BRCA2	675	ucsc.edu;bcgsc.ca	37	13	32920964	32920964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	BRCA2	NM_000059	exon13	c.G6938T	p.G2313V	TCCTAGGCACAAT		35	4	0.11	65	0	0		812		3	0	0.00			
ACIN1	22985	ucsc.edu	37	14	23548787	23548787	+	Missense_Mutation	SNP	C	C	T	rs61741619	bycluster;byfrequency	TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	ACIN1	NM_001164814	exon6	c.G1931A	p.R644H	CGAGAACGTGAAC		121	15	0.12	121	0	0		147		77	10	0.13			
CD276	80381	mdanderson.org	37	15	74000799	74000799	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001024736	exon7	c.G1489T	p.E497X	AGCTGTGAGGAGG		45	3	0.07	67	0	0				141	0	0.00			
C15orf40	123207	mdanderson.org	37	15	83677284	83677284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001160113	exon3	c.T382C	p.F128L	AAAAAAAGAGAGC		32	3	0.09	61	0	0				1	0	0.00			
.	374677	ucsc.edu	37	16	67386	67386	+	Silent	SNP	T	T	C	rs62031401		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	.	.	.	.	GGGCTCTGGCTTG		26	12	0.46	11	1	0.0909090909				0	0				
TMEM8A	58986	mdanderson.org	37	16	422655	422655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_021259	exon12	c.C1975A	p.L659M	GCCCCAGCATGTT		41	3	0.07	40	0	0				201	0	0.00			
CCDC78	124093	mdanderson.org	37	16	776359	776359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001031737	exon1	c.C9A	p.H3Q	GGCTGCGTGCTCC		20	3	0.15	30	0	0				5	0	0.00			
TPSG1	25823	mdanderson.org	37	16	1273502	1273502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	TPSG1,colon,carcinoma,+1,1	TPSG1	NM_012467	exon3	c.C166A	p.R56S	GCAGGCGGAGGCT		26	3	0.12	28	1	0.0357142857		1	1	19	0	0.00			
TELO2	9894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1544544	1544544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_016111	exon2	c.G262T	p.A88S	CTGTGGGCCAGCT		50	26	0.52	47	0	0				86	41	0.48			
ABCC6	368	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	16297454	16297454	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001171	exon8	c.G811C	p.A271P	TAAATGCTATTGC		141	57	0.40	207	0	0				0	0				
IL21R	50615	broad.mit.edu;mdanderson.org	37	16	27456040	27456040	+	Splice_Site	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	IL21R	NM_181079	exon7	c.G751T	p.E251X	TCAGAGGGTAGGT		48	4	0.08	71	0	0		95		2	0	0.00			
CHST6	4166	mdanderson.org	37	16	75513051	75513051	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_021615	exon3	c.C676T	p.L226L	TGCCCAGCACGAT		31	3	0.10	37	0	0				0	0				
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		276	21	0.08	236	16	0.0677966102				21	9	0.43			
NBR1	4077	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41345207	41345207	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	NBR1	NM_031862	exon11	c.C1170T	p.T390T	AGGAACCAAGTTT		122	33	0.27	98	1	0.0102040816		55		54	14	0.26			
NPC1	4864	mdanderson.org	37	18	21136215	21136215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_000271	exon8	c.C1318A	p.L440M	GGTGCAGTATCTG		46	3	0.07	55	0	0				32	0	0.00			
C19orf26	255057	mdanderson.org	37	19	1236043	1236043	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_152769	exon2	c.C57A	p.A19A	TACTGTGGCAGTG		40	3	0.08	30	0	0				18	0	0.00			
SIRT6	51548	mdanderson.org	37	19	4174679	4174679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_016539	exon8	c.C1003T	p.R335W	TGGGCCGCTCCCG		32	3	0.09	35	0	0				115	0	0.00			
.	0	broad.mit.edu	37	19	20242379	20242380	+	RNA	INS	-	-	T	rs112605508		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	.	.	.	.	TTTCTTCTTTTTT		12	4	0.33	6	0	0				3	0	0.00			
FCGBP	8857	mdanderson.org	37	19	40421236	40421236	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_003890	exon5	c.C2685T	p.G895G	GTTCTGGCCGCAT		44	3	0.07	51	0	0				0	0				
RTN2	6253	mdanderson.org	37	19	45997951	45997951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_206900	exon3	c.C392A	p.P131H	GATGGAGGCGCGG		45	3	0.07	56	0	0				49	0	0.00			
C2orf50	130813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	11273603	11273603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_182500	exon1	c.C143A	p.A48D	GCCAGGCCCCCCA		37	14	0.38	38	0	0				6	3	0.50			
DNMT3A	1788	mdanderson.org	37	2	25523020	25523020	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_175630	exon3	c.C165A	p.R55R	GTGCTTGCGCTTC		33	3	0.09	27	1	0.037037037				45	0	0.00			
SLC8A1	6546	broad.mit.edu;mdanderson.org	37	2	40342735	40342735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	SLC8A1	NM_021097	exon10	c.C2580A	p.D860E	ATACTGGTCCTGG		29	12	0.41	25	0	0		221		1	0	0.00			
.	284958	broad.mit.edu;mdanderson.org	37	2	113479811	113479811	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	.	.	.	.	CGCCCACGGGAAT		62	4	0.06	100	0	0				0	0				
THBD	7056	mdanderson.org	37	20	23028534	23028534	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_000361	exon1	c.C1608A	p.L536L	GTGGCAGAGGAGC		46	3	0.07	74	0	0				1	0	0.00			
FRG1B	284802	bcgsc.ca	37	20	29628233	29628233	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	FRG1B	.	.	.	.	GGGAAAATGGCTT		393	13	0.03	463	3	0.0064794816		181		88	0	0.00			
ERGIC3	51614	mdanderson.org	37	20	34136278	34136278	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_015966	exon6	c.G478T	p.E160X	ACCTGTGAAGATG		85	5	0.06	75	0	0				731	0	0.00			
SGSM1	129049	mdanderson.org	37	22	25255730	25255730	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001098497	exon9	c.G849T	p.T283T	CCAGACGGCTGAC		34	3	0.09	64	0	0				7	0	0.00			
MN1	4330	broad.mit.edu	37	22	28195494	28195494	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	MN1	NM_002430	exon1	c.A1038C	p.P346P	AGGGGGTGGCGGG		63	21	0.33	45	10	0.2222222222		122		10	0	0.00			
CHADL	150356	mdanderson.org	37	22	41634716	41634716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_138481	exon3	c.C360A	p.N120K	CAGGTGGTTGGAG		32	3	0.09	27	0	0				0	0				
CSDC2	27254	mdanderson.org	37	22	41970829	41970829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_014460	exon4	c.A392G	p.E131G	CCGTGGAGGTGGT		46	3	0.07	48	0	0				1	0	0.00			
SRGAP3	9901	mdanderson.org	37	3	9036124	9036124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_014850	exon19	c.C2311A	p.L771M	GGAGCAGCGAGGC		48	3	0.06	43	0	0				9	0	0.00			
ALS2CL	259173	mdanderson.org	37	3	46728533	46728533	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001190707	exon5	c.C474A	p.L158L	ATGGGCGAGTGGC		32	3	0.09	62	0	0				16	0	0.00			
KIF9	64147	broad.mit.edu	37	3	47312777	47312777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	KIF9	NM_182902	exon5	c.T541C	p.S181P	GAACTGACAAGCC		89	3	0.03	108	0	0		59		2	0	0.00			
IQCF3	401067	mdanderson.org	37	3	51864702	51864702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001085479	exon7	c.G350T	p.C117F	CTCTCTGCTTGTT		82	4	0.05	93	0	0				0	0				
CPN2	1370	mdanderson.org	37	3	194062273	194062273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001080513	exon2	c.C1159A	p.L387M	TGAACAGGTTGTA		56	3	0.05	92	0	0				0	0				
FAM157A	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	197894592	197894592	+	RNA	SNP	G	G	C	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	FAM157A	NM_001145248	exon5	c.G934C	p.V312L	GAAACTGTGAGCA		240	37	0.15	295	0	0		4		0	0				
DSPP	1834	bcgsc.ca	37	4	88536953	88536953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	DSPP	NM_014208	exon5	c.G3139A	p.D1047N	AGCAGCGATAGCA		63	7	0.11	85	0	0		174		0	0				
SPOCK3	50859	broad.mit.edu	37	4	167656103	167656103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	SPOCK3,NS,carcinoma,0,4	SPOCK3	NM_016950	exon12	c.A1280G	p.D427G	CCACCATCATCAT		273	4	0.01	435	0	0		90	4	0	0				
KIAA0947	23379	mdanderson.org	37	5	5464352	5464352	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_015325	exon13	c.G4905T	p.L1635L	GCCTCTGCTTGCT		43	3	0.07	59	0	0				54	0	0.00			
AMACR	23600	mdanderson.org	37	5	34007933	34007933	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_203382	exon1	c.C192A	p.A64A	CAGCACGGCGGCT		12	3	0.25	10	0	0				14	0	0.00			
TCOF1	6949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149754707	149754707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001135243	exon10	c.C1469T	p.A490V	CACTGGCAGCCAT		120	39	0.33	166	0	0				142	53	0.37			
ADAM19	8728	mdanderson.org	37	5	156923970	156923970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_033274	exon14	c.G1526A	p.G509D	GCCTGGCCGCCCT		41	3	0.07	71	0	0				5	0	0.00			
SLU7	10569	mdanderson.org	37	5	159831548	159831548	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_006425	exon15	c.C1480A	p.L494M	CTTTCAGTTTTTC		40	3	0.08	45	0	0				213	0	0.00			
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	15497278	15497278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_004973	exon7	c.G1822A	p.V608I	CGGTTTGTCACGC		139	23	0.17	127	0	0				614	166	0.27			
C6orf136	221545	mdanderson.org	37	6	30619174	30619174	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	C6orf136_ENST00000293604,caecum,carcinoma,0,2	C6orf136_ENST00000293604	NM_001161376	exon4	c.G1238T	p.R413L	GGTGGCGGCTTGT		56	3	0.05	50	0	0		0	2	194	0	0.00			
PPP2R5D	5528	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42978951	42978951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	PPP2R5D	NM_006245	exon16	c.T1736C	p.V579A	AGGACGTGTACAC		206	45	0.22	176	1	0.0056818182		47		186	64	0.34			
FAM46A	55603	mdanderson.org	37	6	82461790	82461790	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_017633	exon2	c.A69C	p.L23L	GCCGCCTAGGGGG		50	5	0.10	37	1	0.027027027				0	0				
HBS1L	10767	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	135358728	135358728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	HBS1L	NM_001145207	exon5	c.A867G	p.I289M	GCCCTTTATGATT		86	31	0.36	72	1	0.0138888889		75		24	7	0.29			
LMOD2	442721	broad.mit.edu	37	7	123302963	123302963	+	Silent	SNP	T	T	A	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	LMOD2_ENST00000458573,NS,carcinoma,0,1	LMOD2	NM_207163	exon2	c.T1323A	p.P441P	ACCACCTCCTCCT		101	4	0.04	81	0	0		62	1	0	0				
PRRT4	401399	mdanderson.org	37	7	127992356	127992356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_001174164	exon6	c.C1254A	p.F418L	GTCGTAGAAGAGC		19	2	0.11	11	0	0				1	0	0.00			
SSPO	23145	mdanderson.org	37	7	149522448	149522448	+	Missense_Mutation	SNP	G	G	A	rs376457361		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_198455	exon99	c.G14075A	p.R4692H	GGGACCGCGTTCA		46	3	0.07	43	1	0.023255814				1	0	0.00			
TSNARE1	203062	mdanderson.org	37	8	143399985	143399985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_145003	exon7	c.C904A	p.Q302K	CCTGCTGTGCCGT		26	3	0.12	32	0	0				32	0	0.00			
EPPK1	83481	mdanderson.org	37	8	144946691	144946691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_031308	exon1	c.C731T	p.A244V	TCAGCTGCACTCA		18	2	0.11	23	0	0				2	0	0.00			
CDKN2A	1029	mdanderson.org	37	9	21994303	21994303	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_058195	exon1	c.C28A	p.R10R	GAATCCGGAGGGT		21	2	0.10	25	0	0				2	0	0.00			
DCAF12	25853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34089434	34089434	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_015397	exon8	c.A1179C	p.K393N	GGTTAGTTTCAGA		68	17	0.25	69	0	0				89	17	0.19			
LOC100132077	0	broad.mit.edu	37	9	97109268	97109275	+	RNA	DEL	AAAAAAGA	AAAAAAGA	-	rs371617960	bycluster;alternate_allele	TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	AAAAAAGA	AAAAAAGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	.	.	.	.	AAAAAGAAAAAAG		10	3	0.30	7	0	0				0	0				
C9orf114	51490	mdanderson.org	37	9	131589464	131589464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_016390	exon4	c.C215A	p.P72H	GTGTAGGGCCGCC		51	3	0.06	29	0	0				89	0	0.00			
NELFB	25920	mdanderson.org	37	9	140157611	140157611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_015456	exon5	c.G720T	p.E240D	GGCTGAGCTGCTC		44	3	0.07	55	0	0				236	1	0.00			
ATP6	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	9203	9203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	ENST00000361899	exon1	c.C677T	p.T226M	ACAACACATAATG		32	29	0.91	31	0	0				0	0				
.	84443	broad.mit.edu	37	X	106846480	106846480	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	.	.	.	.	ACAACAGCAGCAG		169	6	0.04	115	1	0.0086956522				10	0	0.00			
ARHGAP36	158763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	130215791	130215791	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAM4-01A-11D-A435-10	TCGA-2G-AAM4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	68fd725c-8226-46cb-bfd7-1e3bbded6197	4acd74c8-3572-47f4-972c-b9f81e248e33	.	.	NM_144967	exon2	c.C152G	p.S51W	TGGTATCGATACA		98	41	0.42	66	0	0				4	2	0.50			
