Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
SCNN1D	6339	broad.mit.edu	37	1	1222192	1222192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	SCNN1D	NM_001130413	exon8	c.C956T	p.A319V	AGTTTGCCAGGGA		183	4	0.02	279	0	0		60		6	0	0.00			
SSU72	29101	mdanderson.org	37	1	1477477	1477477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	SSU72,caecum,carcinoma,0,1	SSU72	NM_014188	exon5	c.G554A	p.R185H	AAGGTGCGGCCAC		42	3	0.07	55	0	0		0	1	508	0	0.00			
COL8A2	1296	mdanderson.org	37	1	36564848	36564848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_005202	exon2	c.A434G	p.E145G	CCTGGCTCCCCCC		23	3	0.13	45	1	0.0222222222				5	0	0.00			
SZT2	23334	mdanderson.org	37	1	43908679	43908679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_015284	exon58	c.G8170T	p.G2724C	GTACTTGGTCCTG		57	3	0.05	103	0	0				60	0	0.00			
ABCA4	24	mdanderson.org	37	1	94528293	94528293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_000350	exon13	c.C1777A	p.P593T	CTCTGGGACCAGA		27	3	0.11	47	0	0				0	0				
OVGP1	5016	bcgsc.ca	37	1	111957533	111957533	+	Silent	SNP	C	C	T	rs112145355	bycluster	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	OVGP1	NM_002557	exon11	c.G1590A	p.Q530Q	CACAGACTGATGA		107	17	0.16	94	1	0.0106382979		177		4	0	0.00			
VPS45	11311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150053547	150053547	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	VPS45,NS,carcinoma,-2,1	VPS45	NM_007259	exon8	c.T811G	p.F271V	GATGAATTCTATG		108	15	0.14	99	0	0		-2	1	27	11	0.41			
IVL	3713	broad.mit.edu	37	1	152883285	152883285	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	IVL,NS,carcinoma,0,1	IVL	NM_005547	exon2	c.G1012C	p.E338Q	CTGGAGGAGCAGG		111	5	0.05	129	2	0.015503876		100	1	0	0				
CHTOP	26097	broad.mit.edu	37	1	153610804	153610804	+	Silent	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	CHTOP,NS,carcinoma,+1,1	CHTOP	NM_001206612	exon3	c.G99T	p.T33T	GCCGACGCCAGTG		334	4	0.01	344	0	0		34	1	371	0	0.00			
CHRNB2	1141	mdanderson.org	37	1	154544498	154544498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_000748	exon5	c.C1199T	p.A400V	GGTTGGCCGGGGC		12	2	0.17	15	0	0				4	0	0.00			
APOA1BP	128240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156563324	156563324	+	Missense_Mutation	SNP	T	T	C	rs200378020	bycluster	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_144772	exon5	c.T641C	p.I214T	TGCCCATTGCCAG		107	11	0.10	110	0	0				385	116	0.30			
APOA2	336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161193189	161193189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001643	exon2	c.G3T	p.M1I	CAGCTTCATGTTG		94	13	0.14	66	0	0				49	0	0.00			
ATP2B4	493	mdanderson.org	37	1	203669390	203669390	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001684	exon5	c.G706T	p.E236X	ATTGATGAGAGCT		74	4	0.05	86	0	0				19	0	0.00			
SRP9	6726	broad.mit.edu	37	1	225976948	225976948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	SRP9	NM_003133	exon3	c.G148T	p.V50L	TGTTTGGTGTATA		445	5	0.01	445	0	0		5		78	0	0.00			
FRMD4A	55691	hgsc.bcm.edu;broad.mit.edu	37	10	13838519	13838519	+	Silent	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	FRMD4A,NS,malignant_melanoma,-1,1	FRMD4A	NM_018027	exon5	c.C276A	p.P92P	AACCACGGGTCCT		115	5	0.04	120	0	0		-1	1	0	0				
RASSF4	83937	mdanderson.org	37	10	45479556	45479556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_032023	exon5	c.G368T	p.S123I	CAGACAGCTCGGG		42	3	0.07	56	0	0				142	0	0.00			
GRK5	2869	mdanderson.org	37	10	121086095	121086095	+	Silent	SNP	C	C	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_005308	exon2	c.C120T	p.S40S	CATTAGCCAGTGT		36	3	0.08	60	0	0				46	0	0.00			
C10orf120	399814	hgsc.bcm.edu	37	10	124459132	124459132	+	Silent	SNP	G	G	T	rs76198528	alternate_allele	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001010912	exon1	c.C175A	p.R59R	CTCACCGCAACGG		77	4	0.05	82	0	0				0	0				
CCDC73	493860	mdanderson.org	37	11	32739669	32739669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001008391	exon3	c.T160A	p.C54S	CAATCTGCTCTTC		22	2	0.09	41	0	0				0	0				
MADD	8567	mdanderson.org	37	11	47296560	47296560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	MADD,colon,carcinoma,+1,1	MADD	NM_001135944	exon3	c.G509T	p.R170L	GCTCCCGCAACAG		43	3	0.07	29	0	0		1	1	24	0	0.00			
SPTBN2	6712	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	66461270	66461270	+	Missense_Mutation	SNP	G	G	T	rs149464236	alternate_allele	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	SPTBN2	NM_006946	exon22	c.C4566A	p.S1522R	CTGGACGCTGGGC		93	5	0.05	76	0	0		188		54	0	0.00			
CHKA	1119	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	67842260	67842260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001277	exon4	c.C554T	p.A185V	AGAATGGCAAACA		67	5	0.07	100	0	0				18	0	0.00			
PDE2A	5138	mdanderson.org	37	11	72288535	72288535	+	Missense_Mutation	SNP	G	G	T	rs17854062		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_002599	exon31	c.C2719A	p.L907I	TTGGGAGGCCGCG		25	2	0.08	50	0	0				41	0	0.00			
CHORDC1	26973	mdanderson.org	37	11	89935586	89935586	+	Missense_Mutation	SNP	G	G	C	rs1045861	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_012124	exon11	c.C986G	p.A329G	GTTGTGGCATCTT		74	2	0.03	116	0	0				122	0	0.00			
MMP3	4314	mdanderson.org	37	11	102711321	102711321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_002422	exon5	c.C629A	p.T210N	AAATTGGTCCCTA		38	3	0.08	80	0	0				0	0				
DYNC2H1	79659	mdanderson.org	37	11	103027467	103027467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001080463	exon26	c.G4095T	p.Q1365H	AGAACAGACACGC		32	3	0.09	42	0	0				0	0				
TMEM25	84866	mdanderson.org	37	11	118403027	118403027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001144038	exon3	c.G233T	p.R78I	CCTCAAGACTGCT		37	3	0.08	62	0	0				13	1	0.08			
VPS26B	112936	mdanderson.org	37	11	134114860	134114860	+	Silent	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_052875	exon5	c.G750T	p.L250L	CTTCCTGGCCGGG		26	3	0.12	45	0	0				82	0	0.00			
GPR162	27239	hgsc.bcm.edu	37	12	6935869	6935869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	GPR162,caecum,carcinoma,0,1	GPR162	NM_019858	exon5	c.C1267T	p.P423S	TCTACCCCTCGGG		96	4	0.04	80	0	0		0	1	9	0	0.00			
STRAP	11171	mdanderson.org	37	12	16036515	16036515	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_007178	exon2	c.G153T	p.W51C	AGACTGGATTGGA		46	3	0.07	43	0	0				419	0	0.00			
MSRB3	253827	hgsc.bcm.edu;mdanderson.org	37	12	65672601	65672601	+	Missense_Mutation	SNP	G	G	C	rs377713148	alternate_allele	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_198080	exon1	c.G53C	p.C18S	CCCTCTGCCTCTG		127	6	0.05	108	0	0				5	0	0.00			
GLTP	51228	mdanderson.org	37	12	110318081	110318081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_016433	exon1	c.C99A	p.F33L	ACCGAAGAAGGGC		35	3	0.09	26	0	0				51	0	0.00			
HECTD4	283450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112605270	112605270	+	Silent	SNP	G	G	A	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001109662	exon72	c.C11983T	p.L3995L	TCCCCAGCAGCTG		91	19	0.21	99	0	0				99	30	0.30			
RBM19	9904	mdanderson.org	37	12	114374911	114374911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001146699	exon16	c.G1969A	p.A657T	CTGGAGCCCACTC		115	5	0.04	111	0	0				42	0	0.00			
RPLP0	6175	broad.mit.edu	37	12	120634654	120634654	+	Silent	SNP	A	A	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	RPLP0	NM_053275	exon8	c.T876A	p.A292A	GGCTGCAGCAGCA		313	4	0.01	263	0	0		27		11730	7	0.00			
PCDH8	5100	mdanderson.org	37	13	53420269	53420269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_002590	exon1	c.T2303C	p.I768T	ATGGCGATGATGG		16	3	0.19	27	0	0				0	0				
FANCM	57697	mdanderson.org	37	14	45606273	45606273	+	Silent	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_020937	exon2	c.G510T	p.G170G	TTCAGGGTCTACA		38	3	0.08	48	2	0.0416666667				13	0	0.00			
PLEKHH1	57475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	68044798	68044798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_020715	exon19	c.C2633T	p.S878F	ATGTGTCCCTGGC		150	32	0.21	116	0	0				83	21	0.25			
ADAM21P1	0	broad.mit.edu	37	14	70714357	70714357	+	RNA	SNP	T	T	G	rs370130121		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	.	.	.	.	GTACACTAGGGTC		70	4	0.06	68	3	0.0441176471				0	0				
CCDC64B	146439	mdanderson.org	37	16	3080718	3080718	+	Silent	SNP	C	C	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001103175	exon3	c.G594A	p.R198R	CTCCAGCCGCGTC		46	3	0.07	56	0	0				1	0	0.00			
KIAA0430	9665	broad.mit.edu;mdanderson.org	37	16	15719657	15719657	+	Splice_Site	SNP	G	G	A	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	KIAA0430	NM_014647	exon8	c.C1525T	p.Q509X	GGCACTGCTAATA		37	13	0.35	36	0	0		154		20	3	0.15			
PDP2	57546	mdanderson.org	37	16	66918754	66918754	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_020786	exon2	c.G567A	p.W189X	GCATTGGCTCAAG		46	3	0.07	82	0	0				7	0	0.00			
LRRC37BP1	147172	hgsc.bcm.edu;broad.mit.edu	37	17	28961033	28961033	+	RNA	SNP	T	T	G	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	.	.	.	.	CCAGGATATGACT		113	5	0.04	106	0	0				28	0	0.00			
SCRN2	90507	mdanderson.org	37	17	45915296	45915296	+	Silent	SNP	G	G	A	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_138355	exon8	c.C1192T	p.L398L	CGGCCAGCAGCCC		31	3	0.10	36	0	0				36	0	0.00			
HGS	9146	mdanderson.org	37	17	79663412	79663412	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_004712	exon16	c.G1419T	p.K473N	GGACAAGCTGGCA		46	3	0.07	50	0	0				128	0	0.00			
TPGS2	25941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	34378389	34378389	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001271954	exon6	c.T680G	p.L227W	GTTTACAATGGCA		80	27	0.34	79	0	0				5	1	0.20			
SSBP4	170463	mdanderson.org	37	19	18541711	18541711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	SSBP4,NS,carcinoma,0,1	SSBP4	NM_001009998	exon5	c.G340A	p.A114T	ATGGCCGCAGGCT		26	2	0.08	39	0	0		0	1	200	0	0.00			
LRFN1	57622	mdanderson.org	37	19	39805736	39805736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_020862	exon1	c.C241A	p.R81S	GGCGGCGCACGGC		14	2	0.14	19	0	0				18	0	0.00			
SRRM5	100170229	mdanderson.org	37	19	44118004	44118004	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001145641	exon1	c.G1731T	p.K577N	CAGCAAGGAGAGA		48	3	0.06	74	0	0				4	0	0.00			
ERCC1	2067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45920093	45920093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001983	exon6	c.G588T	p.L196F	GAGGATCAATGTG		71	7	0.10	71	0	0				190	48	0.25			
LAIR1	3903	broad.mit.edu	37	19	54871676	54871676	+	Missense_Mutation	SNP	G	G	C	rs190462445	bycluster;by1000genomes	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	LAIR1	NM_002287	exon4	c.C368G	p.T123S	CCAGAGGTTTCTG		97	4	0.04	105	2	0.019047619		44		59	5	0.08			
PTCD3	55037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	86361968	86361968	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_017952	exon21	c.G1636C	p.V546L	CTTCAGGTGGCAT		201	38	0.19	210	0	0				169	15	0.09			
ANKRD36BP2	0	broad.mit.edu	37	2	89102605	89102605	+	RNA	DEL	C	C	-	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	.	.	.	.	GGCTTTCATTCTG		6	2	0.33	4	0	0				2	0	0.00			
WASH2P	0	broad.mit.edu	37	2	114355774	114355784	+	RNA	DEL	GAGGTGGCTGG	GAGGTGGCTGG	-	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	GAGGTGGCTGG	GAGGTGGCTGG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	.	.	.	.	GTCCCCGAGGTGG		10	4	0.40	9	0	0				4	0	0.00			
FAM171B	165215	hgsc.bcm.edu	37	2	187559029	187559029	+	Silent	SNP	A	A	G	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_177454	exon1	c.A129G	p.Q43Q	CATCCAACAGCAG		49	4	0.08	58	0	0				2	0	0.00			
FRG1B	284802	bcgsc.ca	37	20	29628225	29628225	+	Splice_Site	SNP	A	A	G	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	FRG1B	NR_003579	exon5	c.529-2A>G	.	TCACTTAGGGGAA		438	21	0.05	431	7	0.0162412993		181		5	0	0.00			
EEF1A2	1917	bcgsc.ca	37	20	62119705	62119705	+	Silent	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	EEF1A2,colon,carcinoma,-1,1	EEF1A2	NM_001958	exon8	c.C1338A	p.G446G	GGCGCCGCCGCTC		39	4	0.10	56	0	0		60	1	16	0	0.00			
STMN3	50861	mdanderson.org	37	20	62275211	62275211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	STMN3,NS,carcinoma,-2,1	STMN3	NM_015894	exon3	c.C189A	p.D63E	GGACAGGTCAGAA		35	3	0.09	43	0	0		-2	1	310	0	0.00			
.	0	broad.mit.edu	37	22	18842332	18842332	+	RNA	SNP	C	C	T	rs5747858		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	.	.	.	.	AGACATCGGTGGA		133	12	0.09	111	0	0				0	0				
NIPSNAP1	8508	mdanderson.org	37	22	29957542	29957542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_003634	exon6	c.C532A	p.P178T	TTCTGGGCTGTGG		51	3	0.06	74	0	0				206	0	0.00			
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47455365	47455365	+	Silent	SNP	A	A	G	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_012235	exon23	c.T3819C	p.S1273S	CAGCACAGAGGGC		127	21	0.17	115	0	0				278	71	0.26			
BSN	8927	mdanderson.org	37	3	49700906	49700906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_003458	exon7	c.C11315T	p.A3772V	GGGCAGCATCACG		38	3	0.08	36	0	0				36	0	0.00			
SEMA3G	56920	mdanderson.org	37	3	52475647	52475647	+	Silent	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	SEMA3G,colon,carcinoma,0,1	SEMA3G	NM_020163	exon6	c.C610A	p.R204R	CACTTCGGAAGAT		52	3	0.06	60	0	0		0	1	8	0	0.00			
MUC4	4585	broad.mit.edu	37	3	195507694	195507694	+	Missense_Mutation	SNP	A	A	G	rs369368122	bycluster	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	MUC4	NM_018406	exon2	c.T10757C	p.L3586P	GTGACAAGAAGAG		70	11	0.16	75	1	0.0133333333		1505		2	0	0.00			
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55599340	55599340	+	Missense_Mutation	SNP	T	T	G	rs121913514	alternate_allele	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	KIT,NS,malignant_melanoma,+2,48	KIT	NM_000222	exon17	c.T2466G	p.N822K	TTCTAATTATGTG		89	36	0.40	68	0	0		2	48	541	410	0.76			
ART3	419	mdanderson.org	37	4	77003112	77003112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001130016	exon3	c.G205T	p.V69L	GATACTGTGTGGG		52	3	0.06	56	0	0				0	0				
NR3C2	4306	mdanderson.org	37	4	149357077	149357077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001166104	exon2	c.C936A	p.S312R	CGAAGGGCTGGAA		71	5	0.07	109	0	0				0	0				
C5orf51	285636	mdanderson.org	37	5	41917162	41917162	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	C5orf51,colon,carcinoma,0,1	C5orf51	NM_175921	exon6	c.G646T	p.E216X	AGTGGAGAAATGT		50	3	0.06	63	0	0		0	1	18	0	0.00			
DND1	373863	mdanderson.org	37	5	140052386	140052386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_194249	exon3	c.G248A	p.R83H	TAGAGGCGGCCCA		15	2	0.13	17	0	0				135	0	0.00			
FOXC1	2296	mdanderson.org	37	6	1610746	1610746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001453	exon1	c.G66T	p.E22D	CGGCGAGCAGAGC		42	3	0.07	56	0	0				0	0				
RUNX2	860	hgsc.bcm.edu	37	6	45390445	45390445	+	Silent	SNP	A	A	G	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	RUNX2_ENST00000352853,lower_third,carcinoma,0,2	RUNX2_ENST00000352853	NM_001024630	exon3	c.A174G	p.Q58Q	GCAGCAACAGCAG		49	3	0.06	51	0	0		0	2	1	0	0.00			
LRRC1	55227	mdanderson.org	37	6	53660068	53660068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_018214	exon1	c.T14C	p.I5T	ACTGCATCCCCCT		47	3	0.06	45	0	0				5	0	0.00			
MRAP2	112609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	84772667	84772667	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_138409	exon3	c.T183G	p.F61L	TATGTTTTTTGTG		146	22	0.15	121	0	0				17	7	0.41			
HSF2	3298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	122744744	122744744	+	Silent	SNP	T	T	C	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_004506	exon10	c.T1089C	p.Y363Y	GGATTATCTTGAC		60	12	0.20	58	0	0				65	17	0.26			
SCAF8	22828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155154403	155154403	+	Silent	SNP	A	A	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_014892	exon20	c.A3690T	p.V1230V	ACCAGTACAGAAT		106	18	0.17	107	0	0				269	75	0.28			
TNRC18	84629	mdanderson.org	37	7	5391702	5391702	+	Missense_Mutation	SNP	C	C	T	rs3801048	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001080495	exon17	c.G5218A	p.E1740K	GGAATTCTTCGTC		127	3	0.02	125	0	0				215	0	0.00			
STK17A	9263	mdanderson.org	37	7	43635533	43635533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_004760	exon2	c.G240T	p.K80N	TATAAAGAAAGAT		52	3	0.06	65	0	0				71	0	0.00			
LHFPL3	375612	hgsc.bcm.edu	37	7	103969251	103969251	+	Silent	SNP	C	C	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	LHFPL3,NS,carcinoma,0,1	LHFPL3	NM_199000	exon1	c.C24T	p.A8A	CGCTGCCGCCGCC		49	3	0.06	46	1	0.0217391304		0	1	0	0				
FOXP2	93986	mdanderson.org	37	7	114270000	114270000	+	Silent	SNP	G	G	A	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	FOXP2,NS,carcinoma,0,6	FOXP2	NM_148898	exon6	c.G612A	p.Q204Q	ACAACAGCAGCAG		31	3	0.10	24	0	0		0	6	2	0	0.00			
ATP6V1H	51606	broad.mit.edu	37	8	54742088	54742088	+	Silent	SNP	A	A	G	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	ATP6V1H	NM_015941	exon4	c.T222C	p.A74A	TGTTTTAGCACAC		38	4	0.11	18	0	0		66		91	0	0.00			
FAM122A	116224	broad.mit.edu	37	9	71395159	71395159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	FAM122A	NM_138333	exon1	c.G79A	p.G27S	GGCAGCGGCGGCG		81	3	0.04	66	1	0.0151515152		14		42	0	0.00			
ABCA1	19	mdanderson.org	37	9	107554227	107554227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_005502	exon43	c.C5810A	p.P1937H	CCAGGAGGAATGC		46	3	0.07	66	0	0				30	0	0.00			
AK1	203	mdanderson.org	37	9	130635029	130635029	+	Silent	SNP	T	T	C	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_000476	exon4	c.A147G	p.S49S	CGAGCCTGAGCTG		50	3	0.06	83	0	0				34	0	0.00			
FAM104B	90736	mdanderson.org	37	X	55172630	55172630	+	Nonsense_Mutation	SNP	G	G	A	rs113263757	bycluster	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001166700	exon3	c.C238T	p.Q80X	AGAACTGGGGAAA		38	5	0.13	27	1	0.037037037				109	0	0.00			
FAM104B	90736	mdanderson.org	37	X	55172645	55172645	+	Missense_Mutation	SNP	C	C	G	rs1047042	bycluster;byfrequency;alternate_allele	TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	NM_001166700	exon3	c.G223C	p.D75H	TTGCATCGGGTTC		38	3	0.08	29	1	0.0344827586				114	0	0.00			
.	0	bcgsc.ca;mdanderson.org	37	X	101437560	101437560	+	RNA	SNP	G	G	C	novel		TCGA-2X-A9D5-01A-11D-A435-10	TCGA-2X-A9D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c2d2797f-df6f-4d7d-b19d-5abe92fc9533	e62d817f-988d-403f-919c-116b44eeffc7	.	.	.	.	.	.	GGTGAAGTTTTAT		584	152	0.26	504	0	0				0	0				
