Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
FBXO2	26232	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	11709267	11709267	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_012168	exon5	c.C633G	p.S211R	AGCGTCGCTGCGG		72	14	0.19	84	0	0				21	8	0.38			
AKIRIN1	79647	mdanderson.org	37	1	39469060	39469060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_024595	exon4	c.A538G	p.M180V	CAGATTATGCGAC		48	3	0.06	57	0	0				232	0	0.00			
PABPC4	8761	mdanderson.org	37	1	40030789	40030789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_003819	exon8	c.G1234T	p.A412S	GGACTGCTGGCAC		40	3	0.08	62	0	0				360	0	0.00			
DPH2	1802	mdanderson.org	37	1	44438207	44438207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_001384	exon6	c.G1466T	p.G489V	GAAGCGGCTGATA		49	3	0.06	83	0	0				115	0	0.00			
PLK3	1263	mdanderson.org	37	1	45266604	45266604	+	Silent	SNP	G	G	A	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_004073	exon2	c.G303A	p.P101P	CAAGCCGCATCAG		67	4	0.06	94	0	0				7	0	0.00			
FGGY	55277	broad.mit.edu	37	1	59811958	59811958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	FGGY_ENST00000303721,colon,carcinoma,+1,2	FGGY	NM_001113411	exon4	c.G353T	p.R118L	ACCATCGAGCAGT		100	3	0.03	154	0	0		99	2	16	0	0.00			
LMO4	8543	broad.mit.edu;mdanderson.org	37	1	87797776	87797776	+	Silent	SNP	C	C	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	LMO4	NM_006769	exon2	c.C78T	p.C26C	AGGCTGCGGGGGC		74	4	0.05	109	0	0		21		172	0	0.00			
CD46	4179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207941164	207941164	+	Silent	SNP	C	C	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_172359	exon8	c.C942T	p.A314A	CAGTGCCTCAGGT		109	31	0.28	110	0	0				74	19	0.26			
NCOA4	8031	mdanderson.org	37	10	51585077	51585077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_001145260	exon9	c.G1224T	p.Q408H	TGTCCAGAACCAT		33	3	0.09	50	0	0				151	1	0.01			
ALDH18A1	5832	mdanderson.org	37	10	97397134	97397134	+	Silent	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_001017423	exon4	c.C363A	p.A121A	GCCAAAGGCTACG		44	3	0.07	61	0	0				34	0	0.00			
PI4K2A	55361	mdanderson.org	37	10	99400600	99400600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_018425	exon1	c.G101T	p.G34V	CCGGGGGCGCGGT		34	3	0.09	46	0	0				12	0	0.00			
MUC2	4583	mdanderson.org	37	11	1093295	1093295	+	Missense_Mutation	SNP	C	C	T	rs200145328	alternate_allele	TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	MUC2_ENST00000441003,rectum,carcinoma,0,2	MUC2_ENST00000441003	NM_002457	exon30	c.C5114T	p.T1705I	CCACCACTACGGT		18	2	0.11	33	0	0		0	2	0	0				
KRTAP5-3	387266	broad.mit.edu	37	11	1629385	1629385	+	Silent	SNP	A	A	G	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	KRTAP5-3	NM_001012708	exon1	c.T231C	p.C77C	GGAGCCACAGCCC		102	8	0.08	132	2	0.0151515152		33		0	0				
FAM160A2	84067	mdanderson.org	37	11	6239143	6239143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_032127	exon9	c.C1715A	p.A572E	CGACGTGCCTCAC		20	2	0.10	24	0	0				21	0	0.00			
PIK3C2A	5286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17121444	17121444	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_002645	exon25	c.C4081G	p.Q1361E	TAGTTTGGGGTTG		70	21	0.30	104	0	0				40	23	0.58			
SIAE	54414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124517336	124517336	+	Silent	SNP	G	G	A	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_170601	exon7	c.C891T	p.I297I	GTCTTCGATGAGT		39	17	0.44	64	0	0				38	36	0.95			
PRDM10	56980	mdanderson.org	37	11	129772250	129772250	+	Silent	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_020228	exon22	c.C3441A	p.T1147T	CCCGTTGGTGGTG		35	3	0.09	88	0	0				9	0	0.00			
MRPS35	0	broad.mit.edu	37	12	27863571	27863572	+	RNA	INS	-	-	T	rs11324548	bycluster;by1000genomes	TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	MRPS35	.	.	.	.	TTAAGGATTTTTT		6	2	0.33	9	0	0		26		0	0				
KCNH3	23416	ucsc.edu	37	12	49937278	49937278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	KCNH3	NM_012284	exon5	c.C800A	p.A267D	ACCTGGCCGTGGA		13	4	0.31	14	0	0		88		20	0	0.00			
SLC35E3	55508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	69140302	69140302	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_018656	exon1	c.G145C	p.V49L	ACCCTGGTGCACT		139	37	0.27	120	0	0				31	11	0.35			
CAPS2	84698	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	75716837	75716837	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	CAPS2	NM_032606	exon5	c.G265C	p.A89P	GGTTTGCTGTACT		421	77	0.18	332	1	0.0030120482		96		0	0				
HVCN1	84329	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	111099034	111099034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	HVCN1	NM_032369	exon4	c.G241A	p.A81T	TGGGTGCGGGGCC		215	8	0.04	226	0	0		38		111	0	0.00			
IRG1	730249	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	13	77531565	77531565	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_001258406	exon4	c.G879C	p.E293D	AGCAGAGAGAGCC		89	26	0.29	146	0	0				0	0				
RBM23	55147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23374412	23374412	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_001077351	exon8	c.C617A	p.S206Y	CCCTTAGAACGAC		95	17	0.18	109	0	0				132	46	0.35			
NRL	4901	mdanderson.org	37	14	24550449	24550449	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_006177	exon3	c.T710A	p.L237H	GCTCAGAGGAAGA		29	3	0.10	49	0	0				3	0	0.00			
CEP170B	283638	mdanderson.org	37	14	105353263	105353263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_001112726	exon12	c.C2687T	p.A896V	ACCTGGCCGCTAC		17	2	0.12	30	0	0				12	0	0.00			
NR2E3	10002	mdanderson.org	37	15	72106456	72106456	+	Silent	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	NR2E3_ENST00000398840,NS,carcinoma,+2,3	NR2E3_ENST00000398840	NM_014249	exon8	c.G1098T	p.V366V	GCCCGTGAGGTGA		27	3	0.11	23	0	0		2	3	0	0				
SETD1A	9739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30974776	30974776	+	Silent	SNP	T	T	C	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_014712	exon5	c.T540C	p.Y180Y	ATACTATGAACTA		75	15	0.20	103	0	0				67	19	0.28			
ELMO3	79767	mdanderson.org	37	16	67235503	67235503	+	Silent	SNP	G	G	A	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_024712	exon10	c.G1035A	p.L345L	GGGGCTGCTGGAG		31	3	0.10	55	0	0				5	0	0.00			
CNTNAP4	85445	mdanderson.org	37	16	76496003	76496003	+	Splice_Site	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_033401	exon9	c.1482+1G>T	.	TTGGAGGTAAGAA		41	3	0.07	90	0	0				0	0				
KRT18P55	0	broad.mit.edu	37	17	26633347	26633348	+	RNA	INS	-	-	G	rs35679432	bycluster	TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	.	.	.	.	TGTTGTTTTTTTT		8	5	0.63	6	0	0				0	0				
LOC284100	0	broad.mit.edu	37	17	36214141	36214141	+	RNA	DEL	A	A	-	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	LOC284100	.	.	.	.	AAAATTAAAAAAA		8	4	0.50	9	0	0		14		0	0				
RPL19	6143	hgsc.bcm.edu	37	17	37360424	37360424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	RPL19,NS,carcinoma,-1,1	RPL19	NM_000981	exon5	c.C451T	p.R151C	AAGGCCCGCAAGA		27	3	0.11	42	1	0.0238095238		-1	1	6239	7	0.00			
SRP68	6730	mdanderson.org	37	17	74037023	74037023	+	Silent	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	SRP68,caecum,carcinoma,0,3	SRP68	NM_014230	exon14	c.C1561A	p.R521R	CTGACCGCACTTG		52	3	0.06	42	0	0		0	3	164	0	0.00			
ENDOV	284131	mdanderson.org	37	17	78395647	78395647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_173627	exon3	c.G248A	p.R83H	AGAGCCGCATGGT		14	3	0.21	33	0	0				18	0	0.00			
NDUFS7	374291	mdanderson.org	37	19	1393300	1393300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_024407	exon7	c.G515A	p.R172H	GCGACCGCATCGT		45	3	0.07	35	0	0				151	0	0.00			
ONECUT3	390874	mdanderson.org	37	19	1754743	1754743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_001080488	exon1	c.G1082A	p.R361H	TGCTGCGCAACCC		34	3	0.09	41	0	0				0	0				
TJP3	27134	mdanderson.org	37	19	3747807	3747807	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_001267561	exon19	c.G2365T	p.E789X	TCCTTGGAGGACA		13	2	0.15	11	0	0				210	0	0.00			
LDLR	3949	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11210902	11210902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	LDLR	NM_001195800	exon2	c.G71T	p.G24V	CAGTGGGCGACAG		41	5	0.12	52	0	0		72		4	0	0.00			
CILP2	148113	mdanderson.org	37	19	19656103	19656103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_153221	exon8	c.G2749T	p.G917C	CGAGAGGGCACAC		45	3	0.07	86	0	0				8	0	0.00			
FAM187B	148109	bcgsc.ca	37	19	35715837	35715837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	FAM187B	NM_152481	exon2	c.T1001C	p.L334P	AGCTTCAGCCCCT		45	4	0.09	57	1	0.0175438596		28		0	0				
GAPDHS	26330	broad.mit.edu	37	19	36033899	36033899	+	Nonsense_Mutation	SNP	G	G	T	rs150710154	bycluster;alternate_allele	TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	GAPDHS	NM_014364	exon7	c.G712T	p.E238X	ATCCACGAGCGAT		94	3	0.03	129	0	0		34		6	0	0.00			
ZNF234	10780	broad.mit.edu	37	19	44661286	44661286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	ZNF234	NM_006630	exon6	c.G1117T	p.V373L	CCATACGTATGTA		78	3	0.04	103	0	0		132		6	0	0.00			
GYS1	2997	mdanderson.org	37	19	49473877	49473877	+	Silent	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_002103	exon14	c.C1735A	p.R579R	GCCGCCGGCTCTG		55	3	0.05	54	0	0				36	0	0.00			
CACNG8	59283	mdanderson.org	37	19	54466566	54466566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_031895	exon1	c.T170C	p.L57P	CCAACCTCACGGC		20	2	0.10	42	0	0				0	0				
ZNF8	7554	broad.mit.edu	37	19	58805784	58805784	+	Missense_Mutation	SNP	G	G	T	rs147895869	bycluster;alternate_allele	TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	ZNF8	NM_021089	exon4	c.G610T	p.D204Y	ACTTACGACTCAC		148	4	0.03	180	0	0		60		14	0	0.00			
EPT1	85465	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	26596369	26596369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	.	.	.	.	GGATCAACTGGTG		167	39	0.23	162	1	0.0061728395				23	10	0.43			
TLX2	3196	mdanderson.org	37	2	74743244	74743244	+	Silent	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_016170	exon3	c.G783T	p.A261A	CTTCGCGCTGCAG		50	3	0.06	66	0	0				4	0	0.00			
.	0	broad.mit.edu	37	2	91887904	91887905	+	RNA	INS	-	-	T	rs369805878	alternate_allele	TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	.	.	.	.	ATTTTCCATTTTT		164	23	0.14	160	3	0.01875				0	0				
GLS	2744	mdanderson.org	37	2	191746158	191746158	+	Silent	SNP	C	C	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_014905	exon1	c.C348T	p.G116G	GTTTGGCAACAGC		55	4	0.07	61	0	0				8	0	0.00			
ATRN	8455	mdanderson.org	37	20	3557613	3557613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_139322	exon14	c.G2322T	p.E774D	GTGGGAGCCCCGG		37	3	0.08	61	0	0				112	0	0.00			
CNBD2	140894	mdanderson.org	37	20	34572642	34572642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_001207076	exon6	c.G658T	p.A220S	TTCTTTGCTAATA		110	5	0.05	130	1	0.0076923077				0	0				
XBP1	7494	mdanderson.org	37	22	29192120	29192120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_005080	exon4	c.C514A	p.P172T	GCAGAGGTGCACG		28	3	0.11	48	0	0				326	0	0.00			
COLQ	8292	mdanderson.org	37	3	15516961	15516961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_005677	exon7	c.C499A	p.P167T	ACCCTGGCAAGCC		48	3	0.06	103	0	0				0	0				
DYNC1LI1	51143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	32578558	32578558	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_016141	exon6	c.C777G	p.Y259X	ATCTCTGTAGTCA		249	54	0.22	300	0	0				103	3	0.03			
DLEC1	9940	mdanderson.org	37	3	38103775	38103775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	DLEC1_ENST00000346219,NS,carcinoma,0,6	DLEC1_ENST00000346219	NM_007335	exon4	c.C789A	p.F263L	TGAGTTCGAAGAT		29	3	0.10	65	0	0		0	6	0	0				
MUC13	56667	mdanderson.org	37	3	124646755	124646755	+	Silent	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_033049	exon2	c.C135A	p.T45T	TTCAGTGGTATCA		24	2	0.08	37	0	0				0	0				
MUC4	4585	hgsc.bcm.edu	37	3	195505828	195505828	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	MUC4_ENST00000463781,NS,carcinoma,-1,3	MUC4_ENST00000463781	NM_018406	exon2	c.C12623G	p.P4208R	GGAAGAGGGGTGG		101	5	0.05	103	0	0		-1	3	1	0	0.00			
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55599320	55599320	+	Missense_Mutation	SNP	G	G	C	rs121913506	bycluster	TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446C	p.D816H	GCCAGAGACATCA		55	39	0.71	74	0	0		0	932	242	241	1.00			
.	0	broad.mit.edu	37	4	112747976	112747976	+	RNA	DEL	T	T	-	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	.	.	.	.	CGACGATTTTTTT		6	2	0.33	5	0	0				0	0				
NPY1R	4886	mdanderson.org	37	4	164247178	164247178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	NPY1R,colon,carcinoma,+2,2	NPY1R	NM_000909	exon2	c.C529A	p.Q177K	TTACTTGGTAGAT		92	5	0.05	148	0	0		2	2	3	0	0.00			
PCDHGB2	56103	mdanderson.org	37	5	140740430	140740430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_032096	exon1	c.G728T	p.S243I	TGTTCAGCCAGGA		49	3	0.06	99	0	0				3	0	0.00			
GLRA1	2741	mdanderson.org	37	5	151239421	151239421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_000171	exon4	c.C401T	p.A134V	AAGTGGGCCCCCT		75	4	0.05	122	0	0				0	0				
ADAMTS2	9509	mdanderson.org	37	5	178581103	178581103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_014244	exon8	c.C1329A	p.F443L	GCGGTGGAAGGCG		23	3	0.13	29	0	0				5	0	0.00			
LRRC61	65999	mdanderson.org	37	7	150034292	150034292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_023942	exon2	c.G342T	p.Q114H	GGGCCAGCTGCAG		20	3	0.15	28	0	0				28	0	0.00			
.	0	broad.mit.edu	37	8	10335889	10335903	+	RNA	DEL	GGCTGCAGTGGTTGT	GGCTGCAGTGGTTGT	-	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	GGCTGCAGTGGTTGT	GGCTGCAGTGGTTGT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	.	.	.	.	TTGTCAGGCTGCA		6	3	0.50	6	0	0				0	0				
FBXO16	157574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	28304723	28304723	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_172366	exon7	c.C808T	p.Q270X	TGTCCTGCAATTT		60	12	0.20	59	0	0				13	3	0.23			
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	81426189	81426189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_023929	exon3	c.G1906A	p.V636M	AGGAATGTGAATG		92	17	0.18	100	0	0				48	20	0.42			
NDRG1	10397	mdanderson.org	37	8	134274318	134274318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_001135242	exon5	c.C298A	p.Q100K	CGTCCTGCTGGCC		31	3	0.10	81	0	0				33	0	0.00			
RUSC2	9853	mdanderson.org	37	9	35548378	35548378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_014806	exon2	c.G1860T	p.Q620H	CACCCAGGTCTGT		34	3	0.09	40	0	0				41	0	0.00			
TJP2	9414	mdanderson.org	37	9	71840238	71840238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_001170416	exon6	c.G1064T	p.G355V	GGCTTGGGAGTCA		46	3	0.07	45	0	0				24	0	0.00			
.	0	broad.mit.edu	37	9	138398057	138398057	+	RNA	DEL	G	G	-	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	.	.	.	.	CCAGGAGGGGCCC		6	2	0.33	8	0	0				0	0				
STARD8	9754	bcgsc.ca	37	X	67940201	67940201	+	Missense_Mutation	SNP	G	G	C	rs201883068		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	STARD8	NM_001142503	exon8	c.G1985C	p.G662A	GCACGGGCCAGCC		105	34	0.32	123	13	0.1056910569		282		81	0	0.00			
BTK	695	mdanderson.org	37	X	100625019	100625019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1G-01A-11D-A435-10	TCGA-4K-AA1G-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	14124f8f-2370-40de-94e3-012ff511bac1	3644a980-951f-4811-b56c-4d02e52f5252	.	.	NM_000061	exon5	c.C358A	p.L120I	TCCTTAGTTCTTC		42	3	0.07	62	0	0				3	0	0.00			
