Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
PGD	5226	mdanderson.org	37	1	10479496	10479496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_002631	exon12	c.G1232T	p.S411I	CAGTCAGCACTGG		37	3	0.08	29	0	0				376	0	0.00			
IFNLR1	163702	mdanderson.org	37	1	24484350	24484350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_170743	exon7	c.C833A	p.T278N	TGAAAGGTTGCCA		47	3	0.06	33	0	0				5	0	0.00			
SLC26A9	115019	mdanderson.org	37	1	205890930	205890930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_134325	exon17	c.C1819A	p.P607T	CGGTGGGGGGCGC		39	3	0.08	40	0	0				0	0				
EPHX1	2052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	226019577	226019577	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_001136018	exon3	c.T281C	p.I94T	AAGTCATCTCCTA		125	7	0.06	106	0	0				267	8	0.03			
OBSCN	84033	mdanderson.org	37	1	228529235	228529235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_001271223	exon85	c.A20825G	p.Q6942R	TGCTGCAGGCACG		33	3	0.09	29	0	0				5	0	0.00			
FMN2	56776	broad.mit.edu;mdanderson.org	37	1	240371502	240371502	+	Silent	SNP	C	C	T	rs200984130		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	FMN2	NM_020066	exon5	c.C3390T	p.P1130P	CATACCCCCTCCT		55	6	0.11	35	0	0		451		0	0				
ZNF692	55657	mdanderson.org	37	1	249148143	249148143	+	Silent	SNP	C	C	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_001136036	exon10	c.G1161A	p.L387L	ACTGTGCAGCTTC		68	4	0.06	57	0	0				43	0	0.00			
PIPSL	0	broad.mit.edu	37	10	95718362	95718377	+	RNA	DEL	TTTCTTTCTTTCTTTC	TTTCTTTCTTTCTTTC	-	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	TTTCTTTCTTTCTTTC	TTTCTTTCTTTCTTTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	.	.	.	.	TTTTCTTTTCTTT		18	9	0.50	6	0	0				0	0				
OR51B4	79339	hgsc.bcm.edu	37	11	5322649	5322649	+	Silent	SNP	G	G	A	rs377539411		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_033179	exon1	c.C528T	p.C176C	ATGGAGGCAAAAT		94	4	0.04	105	0	0				0	0				
OR5M3	219482	ucsc.edu	37	11	56237578	56237578	+	Silent	SNP	A	A	G	rs61902881	bycluster	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	OR5M3	NM_001004742	exon1	c.T396C	p.S132S	CATTTTACTGCCA		44	6	0.14	57	2	0.0350877193		103		0	0				
WDR74	54663	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62601760	62601760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	WDR74	NM_018093	exon9	c.G763T	p.D255Y	GAAGGTCAATTTC		107	7	0.07	105	0	0		36		190	44	0.23			
RELA	5970	mdanderson.org	37	11	65425788	65425788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_001243985	exon8	c.C847A	p.P283T	CCATGGGCTCACT		39	3	0.08	64	0	0				146	0	0.00			
UVRAG	7405	broad.mit.edu	37	11	75852423	75852423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	UVRAG	NM_003369	exon15	c.G2066T	p.S689I	TATCCAGCTTCCG		48	3	0.06	24	0	0		69		58	0	0.00			
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	C	T	rs121913530	bycluster	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	KRAS_ENST00000256078,NS,adenocarcinoma,+1,25136	KRAS_ENST00000256078	NM_004985	exon2	c.G34A	p.G12S	CGCCACCAGCTCC		188	23	0.12	143	0	0		1	25136	25	3	0.12			
LTA4H	4048	hgsc.bcm.edu	37	12	96400148	96400148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_000895	exon16	c.C1474A	p.L492M	CCTTCAGGTCTGT		87	4	0.05	45	0	0				247	0	0.00			
SMAD9	4093	mdanderson.org	37	13	37453517	37453517	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_005905	exon2	c.C310A	p.H104N	CGTGGTGGGACTG		41	3	0.07	36	0	0				3	0	0.00			
.	0	broad.mit.edu	37	14	53265373	53265373	+	RNA	DEL	T	T	-	rs72362578		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	.	.	.	.	TTGTAATTTTTTT		6	2	0.33	4	0	0				0	0				
.	28452	bcgsc.ca	37	14	106518415	106518415	+	RNA	SNP	C	C	A	rs188349361	bycluster;byfrequency	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	.	.	.	.	GTAATACACAGCC		227	26	0.11	164	3	0.0182926829				2901	410	0.14			
SLTM	79811	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	59192108	59192108	+	Silent	SNP	T	T	C	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_024755	exon7	c.A618G	p.Q206Q	TACTTCTTGTGTA		78	6	0.08	52	0	0				41	1	0.02			
HCN4	10021	mdanderson.org	37	15	73660493	73660493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_005477	exon1	c.G119A	p.R40H	TCTTGGCGGCCCC		37	3	0.08	22	0	0				1	0	0.00			
SLCO3A1	28232	hgsc.bcm.edu	37	15	92694221	92694221	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_013272	exon9	c.T1730C	p.L577P	GAGTTCTTTTTCT		92	4	0.04	45	0	0				42	1	0.02			
FLYWCH1	84256	mdanderson.org	37	16	2987340	2987340	+	Missense_Mutation	SNP	C	C	T	rs370316946		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_020912	exon7	c.C1729T	p.R577W	GCCCTGCGGCAGC		13	2	0.15	17	0	0				22	0	0.00			
IL34	146433	mdanderson.org	37	16	70690989	70690989	+	Nonsense_Mutation	SNP	G	G	T	rs8046424	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_001172772	exon5	c.G367T	p.E123X	GAGGTGGAGACGC		56	3	0.05	57	0	0				45	0	0.00			
.	0	broad.mit.edu	37	17	20459719	20459719	+	RNA	DEL	A	A	-	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	.	.	.	.	ATATATATATATA		45	11	0.24	105	4	0.0380952381				0	0				
RARA	0	broad.mit.edu	37	17	38510615	38510615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	RARA	NM_000964	exon7	c.T869C	p.L290P	ACGGGCTGACCCT		136	5	0.04	104	0	0		52		94	4	0.04	rescued with RNA-seq		
TBC1D3P1-DHX40P1	653645	bcgsc.ca	37	17	58066651	58066651	+	RNA	SNP	C	C	T	rs376360537		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	.	.	.	.	GTAAAGCTGTTTA		327	28	0.09	255	8	0.031372549				0	0				
NOTCH3	4854	bcgsc.ca	37	19	15291593	15291593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	NOTCH3	NM_000435	exon19	c.G3041A	p.R1014H	ACGCAGCGACCCC		43	4	0.09	46	0	0		340		31	0	0.00			
CEACAM7	1087	bcgsc.ca	37	19	42190800	42190800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	CEACAM7	NM_006890	exon2	c.C417A	p.F139L	TACGTAGAATTGT		167	7	0.04	109	1	0.0091743119		33		0	0				
ZNF526	116115	ucsc.edu	37	19	42729230	42729230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	ZNF526	NM_133444	exon3	c.A675G	p.K225K	AGAGAAAGAGGAG		94	1	0.01	87	0	0		51		40	5	0.13			
ZNF28	7576	ucsc.edu	37	19	53304611	53304611	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	ZNF28	NM_006969	exon4	c.C487G	p.Q163E	CAACTTGATTACC		107	5	0.05	69	2	0.0289855072		191		14	4	0.29			
ZNF264	9422	mdanderson.org	37	19	57723163	57723163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_003417	exon4	c.G698T	p.C233F	ATGAATGCACAGA		54	3	0.06	56	0	0				9	0	0.00			
EML6	400954	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	2	55138179	55138179	+	Silent	SNP	G	G	A	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_001039753	exon24	c.G3498A	p.E1166E	TTCAGAGGTAATA		315	19	0.06	252	0	0				0	0				
.	0	bcgsc.ca	37	2	130987233	130987233	+	RNA	SNP	C	C	T	rs72863885	bycluster;byfrequency	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	.	.	.	.	CTTCAGCGACTCG		43	17	0.40	30	1	0.0333333333				2	0	0.00			
.	0	bcgsc.ca	37	2	130987239	130987239	+	RNA	SNP	G	G	A	rs72863888	bycluster	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	.	.	.	.	CGACTCGGACAGC		41	17	0.41	29	1	0.0344827586				2	0	0.00			
.	0	bcgsc.ca	37	2	130987270	130987270	+	RNA	SNP	C	C	A	rs112519538	bycluster	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	.	.	.	.	CCGTTCCACTCCC		43	13	0.30	33	1	0.0303030303				1	0	0.00			
.	0	bcgsc.ca	37	2	130987282	130987282	+	RNA	SNP	T	T	G	rs113034866	bycluster	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	.	.	.	.	CTGCCATATGTGC		47	13	0.28	37	1	0.027027027				1	0	0.00			
MCM6	4175	mdanderson.org	37	2	136615517	136615517	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_005915	exon10	c.C1420A	p.H474N	CTTCATGAATAGC		121	5	0.04	96	0	0				122	0	0.00			
NCOA3	8202	hgsc.bcm.edu;mdanderson.org	37	20	46279845	46279845	+	Silent	SNP	G	G	A	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	NCOA3,NS,carcinoma,0,1	NCOA3	NM_181659	exon20	c.G3771A	p.Q1257Q	GCAGCAGCAGCAG		81	14	0.17	76	0	0		0	1	33	0	0.00			
DIP2A	23181	mdanderson.org	37	21	47969714	47969714	+	Silent	SNP	C	C	T	rs199823306	bycluster;by1000genomes	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_206889	exon22	c.C2553T	p.H851H	GCTGCACGACGAC		47	3	0.06	36	0	0	0			18	0	0.00			
CRYBB2P1	0	broad.mit.edu	37	22	25855682	25855683	+	RNA	INS	-	-	GT	rs71322752	bycluster;by1000genomes	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	.	.	.	.	GCAGCTGGTGTGT		7	3	0.43	5	0	0				4	0	0.00			
CRELD2	79174	mdanderson.org	37	22	50319192	50319192	+	Silent	SNP	G	G	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	CRELD2_ENST00000404488,NS,malignant_melanoma,+2,2	CRELD2_ENST00000404488	NM_001135101	exon10	c.G1143T	p.P381P	TGTGCCGCCGGCA		40	3	0.08	43	0	0		2	2	195	0	0.00			
STAB1	23166	mdanderson.org	37	3	52552811	52552811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_015136	exon48	c.C4960T	p.R1654W	CGGCTGCGGAGCG		75	4	0.05	40	0	0				25	0	0.00			
KIT	3815	broad.mit.edu	37	4	55593613	55593613	+	Missense_Mutation	SNP	T	T	G	rs121913521	bycluster	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	KIT,NS,carcinoma,-1,66	KIT	NM_000222	exon11	c.T1679G	p.V560G	AGGTTGTTGAGGA		113	4	0.04	79	0	0		7396	66	29	18	0.62	rescued with RNA-seq		
ANK2	287	mdanderson.org	37	4	114263059	114263059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_001148	exon33	c.G4109T	p.S1370I	CCAGAAGCAGGGA		40	3	0.08	39	0	0				18	0	0.00			
IRX2	153572	mdanderson.org	37	5	2749899	2749899	+	Silent	SNP	G	G	T	rs149245392	bycluster;byfrequency;by1000genomes	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_001134222	exon2	c.C252A	p.G84G	GGGTGCGCCCTGG		23	3	0.13	18	0	0	0.004			0	0				
IL7R	3575	broad.mit.edu	37	5	35875632	35875632	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	IL7R	NM_002185	exon7	c.G819C	p.W273C	CGTATGGCCCAGT		133	9	0.07	77	0	0		200		223	0	0.00			
NIPBL	25836	mdanderson.org	37	5	36986049	36986049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_015384	exon10	c.G2767T	p.G923C	ACAGAGGGTAACA		42	3	0.07	58	0	0				17	0	0.00			
SLC22A16	85413	mdanderson.org	37	6	110768107	110768107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_033125	exon3	c.C620A	p.T207N	ATGAAGGTGTAAT		47	3	0.06	59	0	0				0	0				
ARID1B	57492	broad.mit.edu;mdanderson.org	37	6	157100005	157100005	+	Silent	SNP	C	C	A	rs184815562	bycluster;by1000genomes	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	ARID1B	NM_017519	exon1	c.C942A	p.G314G	CGGCGGCGGAGGA		45	6	0.13	36	0	0		320		0	0				
ARPC1B	10095	mdanderson.org	37	7	98988687	98988687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_005720	exon6	c.C672A	p.S224R	CGACAGCACCGTC		41	3	0.07	28	0	0				1230	0	0.00			
FOXP2	93986	broad.mit.edu;mdanderson.org	37	7	114270000	114270000	+	Silent	SNP	G	G	A	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	FOXP2,NS,carcinoma,0,6	FOXP2	NM_001172767	exon5	c.G612A	p.Q204Q	ACAACAGCAGCAG		27	5	0.19	13	0	0		133	6	0	0				
ZNF786	136051	mdanderson.org	37	7	148769129	148769129	+	Silent	SNP	G	G	A	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_152411	exon4	c.C735T	p.C245C	CTTACCGCACACG		44	3	0.07	46	0	0				3	0	0.00			
REPIN1	29803	mdanderson.org	37	7	150069137	150069137	+	Silent	SNP	C	C	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_001099695	exon3	c.C978T	p.C326C	CGAGTGCGGGAAG		38	3	0.08	28	0	0				49	0	0.00			
SGK223	0	mdanderson.org	37	8	8176578	8176578	+	Missense_Mutation	SNP	G	G	A	rs200725218	bycluster;by1000genomes	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_001080826	exon5	c.C3307T	p.R1103W	AGTCCCGCACGAA		36	3	0.08	27	0	0	0.002			31	0	0.00			
PLEC	5339	mdanderson.org	37	8	144992667	144992667	+	Silent	SNP	G	G	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_201380	exon32	c.C11733A	p.P3911P	GGTGTAGGGGTCA		35	3	0.09	28	0	0				110	0	0.00			
MROH1	727957	mdanderson.org	37	8	145267992	145267992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_001099280	exon13	c.G1237T	p.D413Y	CCTGCTGATCTAA		41	3	0.07	38	0	0				14	0	0.00			
CPSF1	29894	mdanderson.org	37	8	145622455	145622455	+	Silent	SNP	C	C	T	rs113296524	bycluster;byfrequency;by1000genomes	TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_013291	exon23	c.G2559A	p.A853A	GCCCAGCGCCACC		13	2	0.15	21	0	0	0.009			46	0	0.00			
WNK3	65267	mdanderson.org	37	X	54263899	54263899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	NM_020922	exon20	c.C4100A	p.S1367Y	TCACTAGAATGGT		16	2	0.13	18	0	0				3	0	0.00			
MAGEA10-MAGEA5	0	broad.mit.edu	37	X	151296337	151296337	+	RNA	DEL	A	A	-	novel		TCGA-4K-AA1H-01A-11D-A435-10	TCGA-4K-AA1H-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d16db8a0-c864-4e5d-be62-73087e35b0c1	642a50a5-f7ea-4e8c-a370-94d09c675725	.	.	.	.	.	.	TTCCAGAAAAAAA		12	7	0.58	4	0	0				0	0				
