Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
TAS1R3	83756	mdanderson.org	37	1	1269228	1269228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_152228	exon6	c.T1943C	p.L648P	GCTGCCTGAGCAC		24	3	0.13	32	0	0				2	0	0.00			
MMP23B	8510	mdanderson.org	37	1	1569981	1569981	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_006983	exon8	c.C1153T	p.R385X	TCCTGGCGAGTCC		68	3	0.04	85	0	0				3	0	0.00			
PRAMEF2	65122	hgsc.bcm.edu	37	1	12921136	12921136	+	Silent	SNP	C	C	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	PRAMEF2,pharynx,carcinoma,0,1	PRAMEF2	NM_023014	exon4	c.C927T	p.D309D	AGAGGACTTGAAG		81	6	0.07	103	1	0.0097087379		0	1	0	0				
PRAMEF4	400735	ucsc.edu	37	1	12939904	12939904	+	Missense_Mutation	SNP	A	A	C	rs77146569	byfrequency	TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	PRAMEF4	NM_001009611	exon4	c.T898G	p.F300V	TGAGGAACTTTAA		17	6	0.35	25	5	0.2		62		0	0				
ASB17	127247	mdanderson.org	37	1	76388026	76388026	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_080868	exon2	c.C420A	p.Y140X	TGGACAGTATACT		39	3	0.08	42	0	0				0	0				
DNASE2B	58511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	84880280	84880280	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_021233	exon6	c.G815C	p.R272T	GAAAAAGACAAGA		159	19	0.12	160	0	0				6	0	0.00			
AKNAD1	254268	mdanderson.org	37	1	109391643	109391643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_152763	exon4	c.C1073T	p.T358I	TGAGAGGTTGGTG		31	3	0.10	46	0	0				0	0				
DENND4B	9909	mdanderson.org	37	1	153914440	153914440	+	Silent	SNP	C	C	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	DENND4B_ENST00000361217,NS,carcinoma,-1,2	DENND4B_ENST00000361217	NM_014856	exon6	c.G960A	p.V320V	GGACAGCACAGCG		20	2	0.10	18	0	0		-1	2	35	0	0.00			
SOX13	9580	mdanderson.org	37	1	204092289	204092289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_005686	exon11	c.G1184A	p.G395D	AGGACGGCTGTGT		115	5	0.04	132	0	0				142	0	0.00			
FLJ31813	0	broad.mit.edu	37	10	51826259	51826259	+	RNA	DEL	A	A	-	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	.	.	.	.	AAAAGCAAAAAAA		7	3	0.43	4	0	0				1	0	0.00			
DDIT4	54541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	74034751	74034751	+	Silent	SNP	C	C	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_019058	exon3	c.C504T	p.S168S	CCCCAGCCTGGTG		66	7	0.11	72	0	0				401	78	0.19			
AP2A2	161	mdanderson.org	37	11	988573	988573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_001242837	exon10	c.C1156T	p.R386W	AGCGTGCGGCAGC		35	3	0.09	43	0	0				61	0	0.00			
MTL5	9633	mdanderson.org	37	11	68483337	68483337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_004923	exon7	c.C988A	p.H330N	CATGATGCAAGTT		52	3	0.06	65	1	0.0153846154				2	0	0.00			
MYO7A	4647	mdanderson.org	37	11	76867113	76867113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	MYO7A,NS,carcinoma,+1,1	MYO7A	NM_001127180	exon5	c.G446T	p.S149I	GCAACAGCCGAGA		47	3	0.06	71	0	0		1	1	3	0	0.00			
ERC1	23085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1291122	1291122	+	Missense_Mutation	SNP	G	G	C	rs200296939	by1000genomes;alternate_allele	TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_178040	exon10	c.G1907C	p.R636T	AGCAGAGGGACAG		184	13	0.07	166	0	0				35	9	0.26			
PABPC3	5042	hgsc.bcm.edu	37	13	25671967	25671967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_030979	exon1	c.G1631T	p.R544M	CCTCCAGGTTGGC		82	4	0.05	78	0	0				3	3	1.00			
POTEG	404785	broad.mit.edu	37	14	19553750	19553750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	POTEG	NM_001005356	exon1	c.A334G	p.S112G	AGGGGGAGCGGCA		1187	6	0.01	1172	3	0.002559727		118		0	0				
CHGA	1113	broad.mit.edu;mdanderson.org	37	14	93398975	93398975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	CHGA	NM_001275	exon7	c.C1069T	p.R357W	GAGAAGCGGCTGG		23	3	0.13	40	0	0		32		25	0	0.00			
EVL	51466	mdanderson.org	37	14	100593108	100593108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_016337	exon5	c.G487T	p.G163W	GCCACAGGTGAGA		45	3	0.07	27	0	0				130	0	0.00			
MYO5A	4644	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	52671830	52671830	+	Silent	SNP	G	G	A	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_000259	exon18	c.C2200T	p.L734L	GTATCAGTTTCTC		138	9	0.07	106	0	0				50	8	0.16			
ADPGK	83440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	73044820	73044820	+	Silent	SNP	T	T	C	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_031284	exon7	c.A1353G	p.V451V	TTCTACTACTGGC		164	17	0.10	156	0	0				154	26	0.17			
C16orf89	146556	mdanderson.org	37	16	5112523	5112523	+	Silent	SNP	C	C	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	C16orf89_ENST00000422873,NS,carcinoma,-1,3	C16orf89_ENST00000422873	NM_001098514	exon2	c.G261A	p.P87P	GCTCAGCGGCTGC		83	4	0.05	92	0	0		-1	3	1	0	0.00			
SNX29P1	100652781	hgsc.bcm.edu	37	16	21396860	21396860	+	RNA	SNP	T	T	C	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	.	.	.	.	TTTTTCTTTTTTT		137	8	0.06	128	0	0				0	0				
SLC12A3	6559	mdanderson.org	37	16	56906331	56906331	+	Silent	SNP	C	C	A	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_001126108	exon7	c.C921A	p.P307P	GATCCCCCCATCT		40	3	0.08	59	0	0				8	0	0.00			
TSNAXIP1	55815	mdanderson.org	37	16	67860079	67860079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_018430	exon10	c.G1007A	p.R336H	CAGAGCGCTGGCA		42	3	0.07	46	0	0				1	0	0.00			
CDC27	996	mdanderson.org	37	17	45234325	45234325	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_001114091	exon7	c.C796T	p.R266X	AACTTCGACCAGT		47	3	0.06	48	1	0.0208333333				63	0	0.00			
CANT1	124583	broad.mit.edu	37	17	76993313	76993313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	CANT1,NS,carcinoma,0,1	CANT1	NM_001159772	exon4	c.A392G	p.K131R	TAGCCCTTTTTCA		119	3	0.03	139	0	0		39	1	50	0	0.00			
ENOSF1	55556	broad.mit.edu	37	18	712489	712497	+	In_Frame_Del	DEL	GGCGTCCGC	GGCGTCCGC	-	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	GGCGTCCGC	GGCGTCCGC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	ENOSF1	NM_202758	exon1	c.10_18del	p.4_6del	TACCATGGCGTCC		8	4	0.50	10	0	0		44		1	0	0.00			
KLHL14	57565	mdanderson.org	37	18	30260557	30260557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_020805	exon6	c.C1244A	p.A415D	AAACTGGCTCTTC		50	3	0.06	50	0	0				0	0				
FZR1	51343	mdanderson.org	37	19	3525890	3525890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_016263	exon3	c.A94G	p.T32A	ACCCTGACGCCTG		60	3	0.05	59	0	0				87	0	0.00			
MAG	4099	mdanderson.org	37	19	35800791	35800791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_080600	exon8	c.C1246T	p.L416F	GTGCTCCTCCTGG		25	2	0.08	36	0	0				1	0	0.00			
NR1H2	7376	mdanderson.org	37	19	50881647	50881647	+	Silent	SNP	C	C	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_007121	exon5	c.C423T	p.C141C	CAAGTGCCAGCAG		38	3	0.08	34	0	0				112	0	0.00			
NLRP5	126206	mdanderson.org	37	19	56515190	56515190	+	Silent	SNP	G	G	A	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	NLRP5_ENST00000390649,NS,carcinoma,0,2	NLRP5_ENST00000390649	NM_153447	exon2	c.G171A	p.S57S	CAAATCGCTCACC		46	3	0.07	71	0	0		0	2	0	0				
EPAS1	2034	broad.mit.edu	37	2	46605204	46605204	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	EPAS1	NM_001430	exon10	c.G1421C	p.S474T	CCACCAGCAGCAG		83	3	0.04	86	0	0		83		91	0	0.00			
PUS10	150962	broad.mit.edu	37	2	61238921	61238921	+	Silent	SNP	T	T	G	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	PUS10	NM_144709	exon2	c.A105C	p.A35A	GTAAGGTGCATGA		73	15	0.21	53	5	0.0943396226		49		15	0	0.00			
TBC1D8	11138	mdanderson.org	37	2	101643904	101643904	+	Missense_Mutation	SNP	C	C	T	rs201720097	bycluster;by1000genomes;alternate_allele	TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_001102426	exon15	c.G2416A	p.V806I	GGATAACGACTCG		38	3	0.08	58	0	0				29	0	0.00			
KLHL30	377007	broad.mit.edu	37	2	239059588	239059588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	KLHL30	NM_198582	exon8	c.G1619T	p.R540L	CGGTTCGGGACAC		117	3	0.03	143	1	0.006993007		79		0	0				
.	0	broad.mit.edu	37	20	29595756	29595757	+	RNA	INS	-	-	T	rs368096278		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	.	.	.	.	GTGGCTCTTGCCT		6	4	0.67	5	0	0				0	0				
FRG1B	284802	hgsc.bcm.edu	37	20	29625854	29625854	+	RNA	SNP	C	C	G	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	.	.	.	.	TTTTATCTATCTT		118	5	0.04	126	0	0				1	0	0.00			
FRG1B	284802	hgsc.bcm.edu	37	20	29625856	29625856	+	RNA	SNP	A	A	G	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	.	.	.	.	TTATCTATCTTAT		120	5	0.04	126	0	0				1	0	0.00			
RALY	22913	bcgsc.ca;mdanderson.org	37	20	32664877	32664877	+	Silent	SNP	C	C	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	RALY	NM_016732	exon8	c.C702T	p.G234G	CGGCGGCGGTGGT		83	6	0.07	97	1	0.0103092784		44		127	0	0.00			
AMOTL2	51421	mdanderson.org	37	3	134084676	134084676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_016201	exon5	c.C1262T	p.A421V	AGCTTGGCCACCA		47	3	0.06	49	0	0				15	0	0.00			
CRIPAK	285464	bcgsc.ca	37	4	1389076	1389076	+	Silent	SNP	C	C	T	rs113118213	bycluster;byfrequency	TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	CRIPAK	NM_175918	exon1	c.C777T	p.P259P	AGTGCCCGCCTGC		23	5	0.22	42	2	0.0476190476		185		7	0	0.00			
CABS1	85438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71201486	71201486	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_033122	exon1	c.C730G	p.L244V	ATTGACCTAAGTG		69	15	0.22	86	0	0				0	0				
NKD2	85409	broad.mit.edu	37	5	1038447	1038449	+	In_Frame_Del	DEL	CAC	CAC	-	rs75431263	alternate_allele	TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	CAC	CAC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	NKD2	NM_033120	exon10	c.1315_1317del	p.439_439del	CACGAGCACCACC		8	3	0.38	7	0	0		39		62	0	0.00			
CEP120	153241	mdanderson.org	37	5	122729128	122729128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_153223	exon7	c.C676A	p.L226M	TTCCCAGTAAAGA		87	4	0.05	77	0	0				20	0	0.00			
AARS2	57505	broad.mit.edu;mdanderson.org	37	6	44268395	44268395	+	Silent	SNP	G	G	A	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	AARS2	NM_020745	exon22	c.C2847T	p.H949H	CCCCATGTGGCTG		55	8	0.15	51	0	0		77		114	26	0.23			
MIR2113	0	broad.mit.edu	37	6	98472766	98472767	+	RNA	INS	-	-	A	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	.	.	.	.	AATATGTAAAAAA		6	2	0.33	4	0	0				0	0				
LPA	4018	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	160958956	160958956	+	Silent	SNP	G	G	A	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	LPA	NM_005577	exon38	c.C5773T	p.L1925L	ATGGCAGACAAGC		127	6	0.05	161	0	0		237		0	0				
.	0	broad.mit.edu	37	6	161326647	161326648	+	RNA	INS	-	-	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	.	.	.	.	TCTATTGTTTTTT		6	2	0.33	4	0	0				0	0				
ADCY1	107	mdanderson.org	37	7	45614334	45614334	+	Silent	SNP	G	G	A	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_021116	exon1	c.G192A	p.A64A	GAAGGCGCTGGCC		13	2	0.15	16	0	0				0	0				
KCP	375616	broad.mit.edu	37	7	128548302	128548304	+	RNA	DEL	AAG	AAG	-	rs139059512	by1000genomes;alternate_allele	TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	AAG	AAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	KCP	.	.	.	.	GAAAGAAAGAAGA		9	4	0.44	7	0	0		16		0	0				
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	110509211	110509211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	PKHD1L1,NS,carcinoma,+1,1	PKHD1L1	NM_177531	exon64	c.A10391G	p.Y3464C	GGATCTATATGAA		163	8	0.05	138	0	0		1	1	0	0				
COL14A1	7373	bcgsc.ca	37	8	121344415	121344415	+	Silent	SNP	A	A	G	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	COL14A1	NM_021110	exon41	c.A4695G	p.P1565P	ACCTCCAGGACCA		156	6	0.04	150	0	0		292		71	0	0.00			
CPSF1	29894	mdanderson.org	37	8	145623295	145623295	+	Silent	SNP	G	G	A	rs150747740	byfrequency	TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_013291	exon20	c.C1947T	p.C649C	CACGGCGCACTGC		50	3	0.06	74	0	0	0.001			93	0	0.00			
.	0	broad.mit.edu	37	9	45733883	45733884	+	Frame_Shift_Ins	INS	-	-	AC	rs71259407		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	.	.	.	.	ATGGGAGACACAC		15	3	0.20	19	0	0				0	0				
PCSK5	5125	mdanderson.org	37	9	78936532	78936532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_001190482	exon30	c.G3998A	p.C1333Y	AGGACTGCATCCA		39	3	0.08	42	0	0				0	0				
ALDOB	229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	104187142	104187142	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_000035	exon8	c.T982G	p.F328V	TCATAAAAGCCTC		188	32	0.17	192	0	0				0	0				
AMER1	139285	broad.mit.edu	37	X	63412939	63412939	+	Silent	SNP	T	T	C	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_152424	exon2	c.A228G	p.G76G	GCTCCGTCCCCCT		116	3	0.03	125	1	0.008				0	0				
.	84443	ucsc.edu	37	X	106769929	106769929	+	Silent	SNP	C	C	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	.	.	.	.	GGCTGGCAGTGAG		43	4	0.09	51	0	0				0	0				
HAUS7	55559	mdanderson.org	37	X	152722099	152722099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	NM_017518	exon6	c.C487A	p.H163N	CGAAGTGCTCCAT		42	3	0.07	61	0	0				118	0	0.00			
.	100874520	bcgsc.ca	37	Y	10011533	10011533	+	RNA	SNP	G	G	T	rs414350		TCGA-4K-AA1I-01A-11D-A435-10	TCGA-4K-AA1I-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48	5a404d57-b50b-4e7e-83c5-dff65c2c3465	.	.	.	.	.	.	TGAGATGCAGGCC		59	11	0.19	54	0	0				0	0				
