Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
NOL9	79707	mdanderson.org	37	1	6614471	6614471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_024654	exon1	c.G92A	p.R31H	GGCCGGCGGCTGA		23	2	0.09	21	0	0				0	0				
PADI6	353238	broad.mit.edu	37	1	17706676	17706676	+	RNA	DEL	G	G	-	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	PADI6	.	.	.	.	TTTTGTGGGGTAT		6	2	0.33	8	0	0		51		0	0				
RLF	6018	mdanderson.org	37	1	40661433	40661433	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_012421	exon4	c.G604T	p.E202X	ACGGAGGAAGGTA		43	3	0.07	55	0	0				0	0				
MROH7	374977	mdanderson.org	37	1	55134566	55134566	+	Silent	SNP	C	C	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001039464	exon5	c.C1345T	p.L449L	GATCTGCTGGAGG		51	3	0.06	44	0	0				1	0	0.00			
KIF26B	55083	mdanderson.org	37	1	245861584	245861584	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_018012	exon13	c.C6001T	p.Q2001X	CGCCTGCAGCGGC		37	3	0.08	29	0	0				0	0				
ZEB1	6935	mdanderson.org	37	10	31803542	31803542	+	Silent	SNP	G	G	T	rs149166539	alternate_allele	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001174096	exon6	c.G699T	p.T233T	TGTGACGCAGTCT		49	3	0.06	52	0	0				2	0	0.00			
ZNF33A	7581	mdanderson.org	37	10	38343734	38343734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_006954	exon5	c.C682A	p.L228I	GAAACCCTCCTTG		46	3	0.07	62	0	0				7	0	0.00			
FLJ31813	0	hgsc.bcm.edu	37	10	51823051	51823051	+	RNA	SNP	T	T	C	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	.	.	.	.	CCCCCCTACTCCC		68	21	0.31	74	0	0				0	0				
PACSIN3	29763	mdanderson.org	37	11	47202203	47202203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001184975	exon5	c.T250C	p.F84L	TGAAAAAGGCATG		16	2	0.13	18	0	0				41	0	0.00			
OR4C3	256144	broad.mit.edu	37	11	48346502	48346502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	OR4C3	NM_001004702	exon1	c.G10T	p.V4F	CAATTAGTTCTAT		93	4	0.04	101	0	0		75		0	0				
CD248	57124	mdanderson.org	37	11	66083957	66083957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_020404	exon1	c.C542T	p.T181M	AAGGGCGTGGTAT		11	2	0.18	19	0	0				17	0	0.00			
FAM86C2P	0	broad.mit.edu	37	11	67560590	67560590	+	RNA	SNP	C	C	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	.	.	.	.	TTTATCCGCTTTC		75	6	0.08	98	1	0.0102040816				3	0	0.00			
HEPACAM	220296	mdanderson.org	37	11	124805885	124805885	+	Silent	SNP	T	T	C	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_152722	exon1	c.A18G	p.G6G	CAGGGCTCCCCTT		52	3	0.06	81	0	0				0	0				
NCAPD3	23310	bcgsc.ca	37	11	134027845	134027845	+	Silent	SNP	G	G	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	NCAPD3	NM_015261	exon31	c.C4152T	p.S1384S	TTCTGGGCTTCCA		45	4	0.09	74	0	0		141		28	0	0.00			
FGF6	2251	mdanderson.org	37	12	4554548	4554548	+	Silent	SNP	G	G	T	rs7358740	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	FGF6,colon,carcinoma,-2,2	FGF6	NM_020996	exon1	c.C189A	p.A63A	TAGCCCGGCGCGA		67	3	0.04	46	0	0	0	-2	2	0	0				
RBP5	0	broad.mit.edu	37	12	7281645	7281674	+	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	RBP5	.	.	.	.	TGGCTTTTCCTGA		13	4	0.31	6	0	0		20		6	0	0.00			
KRAS	3845	hgsc.bcm.edu;broad.mit.edu	37	12	25378562	25378562	+	Missense_Mutation	SNP	C	C	G	rs121913527	alternate_allele	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	KRAS_ENST00000256078,colon,carcinoma,+1,137	KRAS_ENST00000256078	NM_004985	exon4	c.G436C	p.A146P	TCTTTGCTGATGT		118	9	0.08	54	1	0.0185185185		1	137	34	3	0.09			
APAF1	317	broad.mit.edu	37	12	99052954	99052954	+	Silent	SNP	A	A	G	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	APAF1	NM_181868	exon5	c.A543G	p.G181G	AGGGGGAGTGCAT		153	4	0.03	121	0	0		111		1	0	0.00			
PABPC3	5042	bcgsc.ca	37	13	25671027	25671027	+	Missense_Mutation	SNP	A	A	G	rs78826513	bycluster;byfrequency	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	PABPC3	NM_030979	exon1	c.A691G	p.K231E	AAATCCAAAGGAT		74	9	0.12	109	1	0.0091743119		129		29	0	0.00			
NKX2-1	7080	mdanderson.org	37	14	36988207	36988207	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001079668	exon2	c.A446C	p.D149A	CGCGGGTCTGGGT		17	7	0.41	13	3	0.2307692308				0	0				
INO80	54617	broad.mit.edu	37	15	41277616	41277616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	INOC1,NS,carcinoma,0,2	INO80	NM_017553	exon32	c.C3841T	p.R1281W	CCTGCCGCAGCCT		131	5	0.04	139	1	0.0071942446		122	2	14	0	0.00			
VPS13C	54832	hgsc.bcm.edu;mdanderson.org	37	15	62199517	62199517	+	Silent	SNP	G	G	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	VPS13C,NS,carcinoma,-1,1	VPS13C	NM_020821	exon66	c.C9051A	p.T3017T	TTTTCTGGTACCA		119	6	0.05	122	0	0		-1	1	5	0	0.00			
ZNF213	7760	mdanderson.org	37	16	3191015	3191015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001134655	exon6	c.G1047T	p.E349D	CCCTGAGTGCGAC		32	3	0.09	28	0	0				1	0	0.00			
SNX29P2	440352	hgsc.bcm.edu	37	16	29375984	29375984	+	RNA	SNP	T	T	C	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	.	.	.	.	TTTTTTTCTTTTT		115	5	0.04	128	0	0				0	0				
ITGAL	3683	mdanderson.org	37	16	30531261	30531261	+	Silent	SNP	G	G	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_002209	exon30	c.G3312T	p.L1104L	GCTGCTGCTGCTC		24	3	0.13	29	0	0				15	0	0.00			
TEPP	374739	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	58011892	58011892	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_199046	exon2	c.A337C	p.K113Q	ACCGTCAAGGCCT		72	5	0.07	95	0	0				0	0				
C16orf70	80262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67165195	67165195	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_025187	exon4	c.G238C	p.E80Q	GTGATCGAAGTAT		182	20	0.11	215	0	0				10	0	0.00			
ST3GAL2	6483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70415679	70415679	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_006927	exon7	c.G966C	p.K322N	GCCAGTCTTCCGG		141	23	0.16	126	0	0				26	5	0.19			
LOC283922	0	broad.mit.edu	37	16	74372644	74372644	+	RNA	SNP	A	A	G	rs2549260	bycluster	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	.	.	.	.	CTTGTCAGGGGGA		81	4	0.05	114	0	0				5	0	0.00			
CDYL2	124359	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	80718479	80718479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_152342	exon2	c.G572A	p.G191D	CATTCACCCATAT		115	7	0.06	121	0	0				1	0	0.00			
NLRP1	22861	mdanderson.org	37	17	5440172	5440172	+	Silent	SNP	G	G	T	rs199748129	alternate_allele	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	NLRP1,colon,carcinoma,0,1	NLRP1	NM_014922	exon8	c.C2959A	p.R987R	CTTACCGTCTGCT		38	3	0.08	67	0	0		0	1	2	0	0.00			
ALOX12B	242	mdanderson.org	37	17	7984268	7984268	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001139	exon4	c.C461A	p.P154H	TAGCTGGGCAGGC		42	3	0.07	60	0	0				0	0				
TBC1D29	26083	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	28887161	28887161	+	Silent	SNP	T	T	C	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	TBC1D29	NM_015594	exon2	c.T39C	p.G13G	ACAGGGTTCCTCA		206	47	0.23	237	1	0.0042194093		19		0	0				
LRRC37BP1	0	broad.mit.edu	37	17	28960991	28960991	+	RNA	DEL	C	C	-	rs10561703	alternate_allele	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	.	.	.	.	TTTTTTCTTTTTT		88	14	0.16	59	0	0				2	0	0.00			
LRRC37A4P	0	broad.mit.edu	37	17	43590674	43590675	+	RNA	INS	-	-	A	rs373528477		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	.	.	.	.	AAAAAACAAAAAA		88	20	0.23	58	11	0.1896551724				0	0				
MAP3K3	4215	mdanderson.org	37	17	61729923	61729923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_203351	exon5	c.A267G	p.I89M	AATTATAGCGTTC		45	3	0.07	63	0	0				4	0	0.00			
TNRC6C	57690	mdanderson.org	37	17	76063992	76063992	+	Silent	SNP	A	A	G	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_018996	exon6	c.A2766G	p.K922K	CAAAAAAGGACTT		54	3	0.06	59	0	0				12	0	0.00			
PGS1	9489	mdanderson.org	37	17	76396833	76396833	+	Silent	SNP	C	C	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_024419	exon6	c.C777A	p.A259A	GATTGCCGACTTC		51	3	0.06	64	0	0				26	0	0.00			
CHAF1A	10036	broad.mit.edu	37	19	4422659	4422661	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	AAG	AAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	CHAF1A	NM_005483	exon5	c.1114_1116del	p.372_372del	GAGGCCAAGAAGA		130	7	0.05	118	0	0		69		33	0	0.00			
EMR1	2015	broad.mit.edu	37	19	6904062	6904062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	EMR1	NM_001256253	exon8	c.G818A	p.R273H	AGTGCCGCCAAGA		126	4	0.03	98	0	0		153		0	0				
MAG	4099	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	35790581	35790581	+	Silent	SNP	G	G	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_080600	exon5	c.G540T	p.L180L	GGGGCTGGGGGAG		46	7	0.15	43	0	0				0	0				
LMTK3	114783	broad.mit.edu	37	19	49001926	49001926	+	Silent	SNP	A	A	G	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	LMTK3	NM_001080434	exon12	c.T2487C	p.P829P	GGAAAAAGGGGTC		53	3	0.06	63	1	0.0158730159		125		4	0	0.00			
SPACA4	171169	broad.mit.edu;mdanderson.org	37	19	49110410	49110410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	SPACA4	NM_133498	exon1	c.C175T	p.P59S	ACTGGTCCGGTCA		46	4	0.09	51	0	0		9		0	0				
TULP2	7288	mdanderson.org	37	19	49399726	49399726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_003323	exon4	c.C172T	p.R58C	AAGAGCGCCAAAG		48	3	0.06	56	0	0				0	0				
POLD1	5424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50918215	50918215	+	Silent	SNP	C	C	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_002691	exon20	c.C2532T	p.V844V	CCTGGTCACTGCC		44	6	0.14	42	0	0				120	14	0.12			
ALMS1	7840	broad.mit.edu	37	2	73829423	73829423	+	Missense_Mutation	SNP	C	C	T	rs368113488		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	ALMS1	NM_015120	exon20	c.C12223T	p.R4075W	ACCGAGCGGGATG		255	5	0.02	276	0	0		384		41	0	0.00			
ANKRD36BP2	0	broad.mit.edu	37	2	89082294	89082295	+	RNA	INS	-	-	TT	rs368332037	bycluster	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	.	.	.	.	AGTCTCATATGTT		9	3	0.33	5	0	0				0	0				
ANKRD36BP2	0	broad.mit.edu	37	2	89082296	89082297	+	RNA	INS	-	-	TC	rs370959214		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	.	.	.	.	TCTCATATGTTGA		9	3	0.33	5	0	0				0	0				
ANKRD36BP2	0	broad.mit.edu	37	2	89104384	89104384	+	RNA	SNP	G	G	A	rs71235233		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	.	.	.	.	TGCAGCGTTCAAG		35	3	0.09	32	0	0				7	0	0.00			
ADRA2B	151	mdanderson.org	37	2	96781577	96781577	+	Silent	SNP	G	G	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_000682	exon1	c.C312T	p.C104C	GATGGCGCACAGG		55	4	0.07	76	0	0				1	0	0.00			
TUBA3D	113457	ucsc.edu	37	2	132237983	132237983	+	Silent	SNP	A	A	G	rs71347110	bycluster;by1000genomes	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	TUBA3D	NM_080386	exon4	c.A717G	p.T239T	CATCACAGCCTCC		75	21	0.28	83	9	0.1084337349		60		22	0	0.00			
PTMA	5757	mdanderson.org	37	2	232577532	232577532	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001099285	exon5	c.A307C	p.K103Q	GATACCAAGAAGC		63	5	0.08	49	0	0				1382	0	0.00			
ZNF343	79175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2464083	2464083	+	Silent	SNP	G	G	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_024325	exon6	c.C1524T	p.L508L	TCTGATGAGATTT		127	21	0.17	101	0	0				13	0	0.00			
FRG1B	284802	mdanderson.org	37	20	29633902	29633902	+	RNA	SNP	C	C	A	rs145072022		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	.	.	.	.	AGAGAACCAAATT		171	5	0.03	165	1	0.0060606061				96	4	0.04	rescued with RNA-seq		
DUSP15	128853	ucsc.edu	37	20	30454893	30454893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	DUSP15	NM_080611	exon3	c.C119A	p.S40X	TGGGGTGACTCAT		38	4	0.11	39	0	0		28		26	0	0.00			
MYH7B	57644	mdanderson.org	37	20	33589862	33589862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_020884	exon44	c.C5914T	p.R1972W	CGGGCACGGACCC		46	3	0.07	43	0	0				9	0	0.00			
LAMA5	3911	mdanderson.org	37	20	60893995	60893995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_005560	exon52	c.C6946A	p.L2316M	CGGCCAGTGTCCG		29	3	0.10	37	0	0				16	0	0.00			
KRTAP10-6	386674	ucsc.edu	37	21	46011987	46011987	+	Missense_Mutation	SNP	A	A	G	rs201334923	bycluster	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	KRTAP10-6	NM_198688	exon1	c.T379C	p.S127P	AGACGGACACACA		72	28	0.39	74	20	0.2702702703		57		0	0				
PLXNB2	23654	mdanderson.org	37	22	50727515	50727515	+	Silent	SNP	G	G	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_012401	exon4	c.C1125T	p.S375S	GTCGCGGCTGCCC		31	3	0.10	30	0	0				3	0	0.00			
WDR52	55779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113115371	113115371	+	Silent	SNP	G	G	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001164496	exon14	c.C1773T	p.A591A	CCCTGTGGCTAGA		77	28	0.36	55	0	0				0	0				
FAM131A	131408	broad.mit.edu	37	3	184059803	184059803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	FAM131A	.	.	.	.	ACCTGTGCTCCCT		228	5	0.02	173	0	0		37		0	0				
GK2	2712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	80328968	80328968	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_033214	exon1	c.A387T	p.K129N	TGGAATTTTTTTA		97	15	0.15	140	0	0				0	0				
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	125590598	125590598	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_020337	exon4	c.G3834C	p.K1278N	TCCAGACTTGGCA		95	20	0.21	110	0	0				11	6	0.55			
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	128984530	128984530	+	Silent	SNP	A	A	G	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_133638	exon13	c.A2025G	p.K675K	CAGAAAACAATAC		147	20	0.14	213	0	0				2	1	0.50			
FAM8A1	51439	hgsc.bcm.edu	37	6	17602826	17602826	+	Nonsense_Mutation	SNP	G	G	T	rs74444948	bycluster;byfrequency	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	FAM8A1,NS,carcinoma,-1,2	FAM8A1	NM_016255	exon2	c.G718T	p.E240X	GGCAGAGAATATG		42	6	0.14	36	0	0	0.008	-1	2	0	0				
VN1R10P	387316	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27293144	27293144	+	RNA	SNP	G	G	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	.	.	.	.	AAACAAGACTGTT		168	31	0.18	179	0	0				0	0				
MUC21	394263	bcgsc.ca	37	6	30954559	30954560	+	Missense_Mutation	DNP	AC	AC	CT	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	AC	AC					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	MUC21	NM_001010909	exon2	c.C608T	p.T203L	AGCACAACCTCCA		58	7	0.12	83	2	0.0240963855		98		5	0	0.00			
TDRD6	221400	mdanderson.org	37	6	46656464	46656464	+	Missense_Mutation	SNP	T	T	G	rs200156736	bycluster	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001168359	exon1	c.T599G	p.V200G	GGCGGGTGCCCGA		11	8	0.73	18	7	0.3888888889	0.004			0	0				
RAC1	5879	mdanderson.org	37	7	6414400	6414400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_006908	exon1	c.G34A	p.G12R	GGAGACGGGTGAG		12	4	0.33	9	0	0				72	9	0.13			
WBSCR22	114049	broad.mit.edu	37	7	73111840	73111840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	WBSCR22	NM_001202560	exon11	c.C746T	p.T249I	ACCAGACTCGGAG		30	6	0.20	20	0	0		27		76	33	0.43			
SLC25A13	10165	hgsc.bcm.edu;broad.mit.edu	37	7	95822404	95822406	+	In_Frame_Del	DEL	ATG	ATG	-	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	ATG	ATG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	SLC25A13	NM_001160210	exon6	c.559_561del	p.187_187del	GTGACCATGATGT		169	16	0.09	130	0	0		131		12	0	0.00			
PPP1R35	221908	bcgsc.ca	37	7	100033039	100033039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	C7orf47,caecum,carcinoma,+1,1	.	NM_145030	exon4	c.C706A	p.R236S	AAGGGCGGGGCCG		52	4	0.08	81	0	0			1	142	0	0.00			
EPO	2056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	100320334	100320334	+	Silent	SNP	G	G	A	rs374875798		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_000799	exon4	c.G294A	p.S98S	GCTGTCGGAAGCT		128	11	0.09	104	0	0				2	0	0.00			
PEBP4	157310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22582428	22582428	+	Missense_Mutation	SNP	G	G	A	rs201433464	bycluster;alternate_allele	TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	PEBP4,colon,carcinoma,+1,3	PEBP4	NM_144962	exon6	c.C445T	p.R149C	GGTAGCGATGGAA		273	32	0.12	199	0	0		1	3	2	0	0.00			
SNTG1	54212	broad.mit.edu	37	8	51449300	51449300	+	Silent	SNP	C	C	T	rs35419988		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	SNTG1_ENST00000518864,NS,carcinoma,0,2	SNTG1	NM_018967	exon11	c.C612T	p.C204C	ATGGTGCGACCTC		177	7	0.04	122	1	0.0081967213		304	2	0	0				
GABBR2	9568	mdanderson.org	37	9	101470851	101470851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_005458	exon1	c.T169C	p.S57P	TGATGGAGAGCGG		13	3	0.23	15	0	0				0	0				
ZBTB43	23099	mdanderson.org	37	9	129595247	129595247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001135776	exon2	c.G459T	p.E153D	GGTAGAGAGCTTT		49	3	0.06	83	0	0				0	0				
ABO	28	broad.mit.edu;mdanderson.org	37	9	136131248	136131248	+	RNA	SNP	G	G	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	ABO	.	.	.	.	CTGGTCGACCATC		66	4	0.06	107	0	0		30		2	0	0.00			
LCN1	3933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138415793	138415793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_001252617	exon4	c.G360T	p.E120D	CTGTGAGGGCGAG		29	10	0.34	51	0	0				0	0				
AR	367	hgsc.bcm.edu;broad.mit.edu	37	X	66766356	66766356	+	Silent	SNP	T	T	C	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_000044	exon1	c.T1368C	p.G456G	GGGTGGTGGCGGC		21	4	0.19	9	0	0				0	0				
MAP2K4P1	139201	bcgsc.ca	37	X	72745475	72745475	+	RNA	SNP	C	C	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	.	.	.	.	AACAGTCACCCTG		25	4	0.16	27	0	0				0	0				
MAGEC1	9947	broad.mit.edu	37	X	140994163	140994163	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	MAGEC1	NM_005462	exon4	c.A973T	p.R325X	CCTGAGAGAACTC		174	4	0.02	109	0	0		317		0	0				
MAGEC1	9947	broad.mit.edu	37	X	140994165	140994165	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	MAGEC1	NM_005462	exon4	c.A975T	p.R325S	TGAGAGAACTCAC		181	5	0.03	112	1	0.0089285714		317		0	0				
MAGEA11	4110	mdanderson.org	37	X	148794834	148794834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_005366	exon2	c.C15A	p.F5L	TCAGTTCCGCAGA		34	3	0.09	34	0	0				2	0	0.00			
HMGB3	3149	mdanderson.org	37	X	150156360	150156360	+	Silent	SNP	G	G	A	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	NM_005342	exon5	c.G576A	p.E192E	AGAAGAGGAGGAG		21	2	0.10	9	0	0				91	4	0.04			
TAP2	6891	mdanderson.org	37	6	32796783	32796783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4K-AAAL-01A-11D-A435-10	TCGA-4K-AAAL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fd2755d-4d01-429c-8104-5e08621da1a3	405246d8-d554-4802-b3ec-6238c11edb2e	.	.	.	.	.	.	ACTGTGCGATCCC		42	3	0.07	48	0	0				67	0	0.00			
