Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
CLCNKB	1188	mdanderson.org	37	1	16377477	16377477	+	Silent	SNP	G	G	T	rs13306237	bycluster	TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_000085	exon12	c.G1161T	p.L387L	GCACCTGTGGTGG		97	9	0.09	124	0	0				0	0				
BCAN	63827	mdanderson.org	37	1	156617454	156617454	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_021948	exon4	c.G621A	p.W207X	TGGCTGGCTGTCG		50	3	0.06	44	0	0				3	0	0.00			
DNAJC1	64215	mdanderson.org	37	10	22292356	22292356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_022365	exon1	c.C8A	p.A3D	CAAGGAGCCGTCA		11	2	0.18	17	0	0				2	0	0.00			
CDH23	64072	mdanderson.org	37	10	73558990	73558990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	CDH23,rectum,carcinoma,-2,1	CDH23	NM_022124	exon49	c.G7177A	p.V2393M	GAAATCGTGGACA		45	3	0.07	93	0	0		-2	1	0	0				
USP54	159195	mdanderson.org	37	10	75276934	75276934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_152586	exon18	c.C3250A	p.L1084I	AGTGAAGCACAAA		46	3	0.07	65	0	0				72	0	0.00			
SLIT1	6585	mdanderson.org	37	10	98781159	98781159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_003061	exon26	c.C2594T	p.A865V	GGGTTGGCACCAA		82	4	0.05	102	1	0.0098039216				0	0				
CPXM2	119587	mdanderson.org	37	10	125528156	125528156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_198148	exon9	c.C1185A	p.F395L	ACACACGAACTGC		20	2	0.10	36	0	0				12	0	0.00			
FANK1	92565	mdanderson.org	37	10	127585212	127585212	+	Missense_Mutation	SNP	A	A	T	rs145156460	bycluster	TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	FANK1,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,2	FANK1	NM_145235	exon1	c.A1T	p.M1L	CCGACCATGGAGC		22	3	0.14	9	0	0		0	2	13	0	0.00			
MUC6	4588	mdanderson.org	37	11	1017211	1017211	+	Missense_Mutation	SNP	C	C	T	rs36128067		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_005961	exon31	c.G5590A	p.A1864T	AAGTGGCCATCTG		108	12	0.11	148	2	0.0135135135				0	0				
OR52L1	338751	mdanderson.org	37	11	6007599	6007599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001005173	exon1	c.C562A	p.Q188K	TGGCTTGGCAGAA		53	3	0.06	67	0	0				0	0				
DGKZ	8525	broad.mit.edu	37	11	46391504	46391504	+	Missense_Mutation	SNP	G	G	T	rs373801182	alternate_allele	TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	DGKZ	NM_001105540	exon7	c.G1079T	p.R360L	TTGTACGGCACCA		238	5	0.02	364	0	0		199		204	0	0.00			
VPS37C	55048	mdanderson.org	37	11	60901523	60901523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_017966	exon3	c.C250A	p.Q84K	CCTTCTGCTCCTG		39	3	0.08	56	0	0				120	0	0.00			
TEX40	0	broad.mit.edu	37	11	64067718	64067718	+	RNA	SNP	T	T	G	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	.	.	.	.	GGCGGGTGGGGTG		15	9	0.60	34	14	0.4117647059				0	0				
EHBP1L1	254102	mdanderson.org	37	11	65350066	65350066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001099409	exon9	c.A1923G	p.I641M	GGTCATAGAGACC		32	3	0.09	49	0	0				40	0	0.00			
ALDH3B2	222	mdanderson.org	37	11	67434105	67434105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	ALDH3B2,NS,carcinoma,0,1	ALDH3B2	NM_001031615	exon4	c.G91A	p.A31T	AGGGTGCGATGAT		48	3	0.06	61	0	0		0	1	0	0				
ATM	472	mdanderson.org	37	11	108121539	108121539	+	Silent	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	ATM_ENST00000278616,colon,carcinoma,+1,2	ATM_ENST00000278616	NM_000051	exon10	c.G1347T	p.G449G	ACATGGGGAACGT		24	3	0.13	53	0	0		1	2	11	0	0.00			
TBCEL	219899	mdanderson.org	37	11	120925820	120925820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001130047	exon5	c.G515T	p.C172F	CTATTTGCTGTCA		51	4	0.08	99	0	0				24	0	0.00			
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25380276	25380276	+	Missense_Mutation	SNP	T	T	C	rs121913240	bycluster	TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	KRAS_ENST00000256078,colon,carcinoma,+1,429	KRAS_ENST00000256078	NM_004985	exon3	c.A182G	p.Q61R	TCCTCTTGACCTG		185	55	0.30	107	0	0		1	429	142	33	0.23			
.	0	broad.mit.edu	37	12	52493869	52493869	+	RNA	DEL	C	C	-	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	.	.	.	.	TCCTCTCCCCCCC		6	2	0.33	4	0	0				0	0				
KRT79	338785	broad.mit.edu	37	12	53217693	53217693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	KRT79	NM_175834	exon6	c.A1124G	p.E375G	TCAGCCTCCCCCT		69	3	0.04	62	0	0		78		0	0				
GOLGA3	2802	hgsc.bcm.edu	37	12	133353241	133353241	+	Silent	SNP	T	T	C	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	GOLGA3,right_upper_lobe,carcinoma,0,2	GOLGA3	NM_005895	exon21	c.A3957G	p.E1319E	TAGCCCTTCCAGT		63	3	0.05	50	2	0.04		0	2	168	1	0.01			
TPTE2P6	0	broad.mit.edu	37	13	25168489	25168489	+	RNA	SNP	G	G	A	rs200109937	bycluster	TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	.	.	.	.	AGTGCAGTTTTTC		27	3	0.11	31	0	0				39	1	0.03			
COL4A1	1282	mdanderson.org	37	13	110835421	110835421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001845	exon28	c.C2014A	p.P672T	TTCCTGGGGTTCC		54	3	0.06	77	0	0				492	0	0.00			
PIGH	5283	mdanderson.org	37	14	68066816	68066816	+	Silent	SNP	C	C	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_004569	exon1	c.G105A	p.R35R	CGAGAGCCGAGGG		61	4	0.07	50	0	0				41	0	0.00			
.	0	broad.mit.edu	37	14	106993939	106993941	+	RNA	DEL	TAC	TAC	-	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	TAC	TAC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	.	.	.	.	ATATGGTACTACT		293	11	0.04	230	5	0.0217391304				150	0	0.00			
C15orf60	283677	mdanderson.org	37	15	73735668	73735668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001042367	exon1	c.C142T	p.P48S	ACAGCCCCCTGCC		23	3	0.13	20	0	0				0	0				
ZNF592	9640	mdanderson.org	37	15	85341275	85341275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_014630	exon6	c.C2575A	p.Q859K	CCCTCCCAGTGAG		43	3	0.07	43	0	0				50	0	0.00			
MAPK8IP3	23162	mdanderson.org	37	16	1812424	1812424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_015133	exon14	c.C1609A	p.Q537K	CGGAACCAGTACA		51	3	0.06	42	0	0				13	0	0.00			
CLN3	1201	mdanderson.org	37	16	28495343	28495343	+	Silent	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001042432	exon10	c.C774A	p.A258A	CTCCGGGGCCTCG		48	3	0.06	67	0	0				105	0	0.00			
ITGAX	3687	mdanderson.org	37	16	31371771	31371771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	ITGAX,NS,carcinoma,0,2	ITGAX	NM_000887	exon8	c.G848T	p.R283L	TCATCCGCTATGC		49	3	0.06	47	0	0		0	2	8	0	0.00			
ARHGEF15	22899	mdanderson.org	37	17	8215854	8215854	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_025014	exon2	c.A497G	p.Q166R	GGGCTCAGGATGC		39	3	0.08	32	0	0				24	0	0.00			
MYH2	4620	mdanderson.org	37	17	10428649	10428649	+	Silent	SNP	G	G	T	rs375114012	alternate_allele	TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001100112	exon33	c.C4554A	p.L1518L	TTCCGTGAGGTCA		77	4	0.05	83	0	0				0	0				
GPR179	440435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	36485919	36485921	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	TCT	TCT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	GPR179	NM_001004334	exon11	c.3532_3534del	p.1178_1178del	CCTCTGTCTTCTT		86	12	0.14	123	0	0		170		0	0				
KRT32	3882	mdanderson.org	37	17	39623426	39623426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_002278	exon1	c.G152A	p.C51Y	GGCAGGCAGACCG		49	3	0.06	57	0	0				0	0				
LSM12	124801	broad.mit.edu	37	17	42143886	42143886	+	Missense_Mutation	SNP	G	G	A	rs374081346	alternate_allele	TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	LSM12	NM_152344	exon2	c.C70T	p.R24W	GCAGCCGCTGCTC		165	6	0.04	168	1	0.005952381		16		44	0	0.00			
MRPL45P2	0	broad.mit.edu	37	17	45567245	45567246	+	RNA	INS	-	-	A	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	.	.	.	.	CCATCTCAAAAAA		8	3	0.38	10	0	0				0	0				
LOC644669	0	broad.mit.edu	37	18	15322956	15322962	+	RNA	DEL	TTTATAC	TTTATAC	-	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	TTTATAC	TTTATAC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	.	.	.	.	TAAAAATTTATAC		9	4	0.44	4	0	0				0	0				
VPS4B	9525	mdanderson.org	37	18	61077568	61077568	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_004869	exon3	c.A251T	p.Q84L	GGCTTCTGTGCTT		48	3	0.06	81	0	0				48	0	0.00			
CYP4F8	11283	broad.mit.edu	37	19	15726757	15726758	+	RNA	INS	-	-	GA	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	CYP4F8	.	.	.	.	TTCCTCTTCCCAC		19	7	0.37	12	0	0		64		0	0				
CYP4F8	11283	broad.mit.edu	37	19	15726759	15726760	+	RNA	INS	-	-	A	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	CYP4F8	.	.	.	.	CCTCTTCCCACTC		18	7	0.39	12	0	0		64		0	0				
CYP4F8	11283	broad.mit.edu	37	19	15726760	15726761	+	RNA	INS	-	-	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	CYP4F8	.	.	.	.	CTCTTCCCACTCA		17	7	0.41	12	0	0		64		0	0				
ZNF296	162979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45575017	45575017	+	Missense_Mutation	SNP	C	C	G	rs368413069	alternate_allele	TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_145288	exon3	c.G1270C	p.A424P	TCTGGGCGCAGGC		47	11	0.23	49	0	0				86	22	0.26			
CD3EAP	10849	mdanderson.org	37	19	45911458	45911458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_012099	exon3	c.C232T	p.H78Y	AAGCGGCACCGCT		41	3	0.07	43	0	0				102	1	0.01			
TULP2	7288	mdanderson.org	37	19	49398749	49398749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_003323	exon5	c.C223A	p.P75T	GGAAAGGGTTCCC		45	3	0.07	37	0	0				5	0	0.00			
SCAF1	58506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50149824	50149824	+	Silent	SNP	G	G	A	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_021228	exon5	c.G303A	p.V101V	GCTGGTGAGTGTC		55	13	0.24	63	0	0				118	11	0.09			
ADAM17	6868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	9661415	9661415	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_003183	exon8	c.A874C	p.K292Q	CAGGTTTTACCTC		141	41	0.29	121	0	0				73	29	0.40			
LPIN1	23175	broad.mit.edu	37	2	11935590	11935590	+	Silent	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	LPIN1	NM_001261428	exon15	c.G2010T	p.P670P	GCAACCGCCGCAG		250	6	0.02	294	0	0		99		83	0	0.00			
CAD	790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27455982	27455982	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_004341	exon19	c.C2965G	p.L989V	GATCGACTCTACT		98	27	0.28	97	0	0				165	61	0.37			
.	0	broad.mit.edu	37	2	231434447	231434447	+	RNA	DEL	G	G	-	rs143142393	by1000genomes;alternate_allele	TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	.	.	.	.	ACAGCTGGTTTTT		20	10	0.50	24	0	0				0	0				
GFRA4	64096	mdanderson.org	37	20	3644039	3644039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_145762	exon1	c.G8A	p.R3H	AGGCAGCGGACCA		31	3	0.10	33	0	0				0	0				
DTD1	92675	mdanderson.org	37	20	18724893	18724893	+	Silent	SNP	G	G	A	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	DTD1,caecum,carcinoma,+2,2	DTD1	NM_080820	exon5	c.G627A	p.P209P	GGAGCCGTAGCTC		40	3	0.08	40	0	0		2	2	82	0	0.00			
CLDN14	23562	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	21	37833709	37833709	+	Silent	SNP	G	G	A	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	CLDN14,NS,carcinoma,0,1	CLDN14	NM_144492	exon3	c.C285T	p.C95C	GCAGGCGCAGGCT		63	5	0.08	49	1	0.0204081633		0	1	0	0				
PIK3IP1	113791	broad.mit.edu	37	22	31685584	31685584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	PIK3IP1	NM_001135911	exon4	c.C409A	p.L137M	CGGGCAGGGCGTT		95	4	0.04	79	0	0		20		24	0	0.00			
IL2RB	3560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37540125	37540125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_000878	exon2	c.G88A	p.G30S	CCTCACCATTCAC		131	45	0.34	108	0	0				63	2	0.03			
MST1R	4486	mdanderson.org	37	3	49940406	49940406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001244937	exon1	c.C637A	p.P213T	AGCGTGGGCTGAA		32	3	0.09	49	0	0				21	0	0.00			
HYAL2	8692	bcgsc.ca	37	3	50357082	50357082	+	Missense_Mutation	SNP	C	C	T	rs367865916		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	HYAL2	NM_033158	exon3	c.G839A	p.R280H	TGGGTGCGAGCCA		50	4	0.08	76	0	0		31		267	1	0.00			
MRPL3	11222	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	131220418	131220419	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	AC	AC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	MRPL3	NM_007208	exon2	c.234_235del	p.78_79del	CAGAGGACACAGT		184	47	0.26	212	0	0		32		192	0	0.00			
SDHAP2	0	broad.mit.edu	37	3	195412436	195412440	+	RNA	DEL	AAAGC	AAAGC	-	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	AAAGC	AAAGC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	.	.	.	.	TTTTGTAAAGCAA		6	2	0.33	5	0	0				41	0	0.00			
HERC6	55008	hgsc.bcm.edu	37	4	89304513	89304513	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	HERC6_ENST00000264346,NS,carcinoma,0,2	HERC6_ENST00000264346	NM_017912	exon2	c.G340T	p.E114X	TTCAAGGAAATAA		80	4	0.05	109	0	0		0	2	31	0	0.00			
ENPEP	2028	mdanderson.org	37	4	111397903	111397903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001977	exon1	c.G333T	p.E111D	GTTGGAGGAGGAC		49	3	0.06	75	0	0				12	0	0.00			
CDH18	1016	broad.mit.edu	37	5	19838939	19838939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	CDH18	NM_001167667	exon3	c.A157G	p.R53G	ATCCCCTTTTGGG		73	3	0.04	96	0	0		561		2	0	0.00			
LOC202181	0	broad.mit.edu	37	5	177099140	177099140	+	RNA	SNP	T	T	A	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	.	.	.	.	ACGATGTAATCCT		25	4	0.16	27	1	0.037037037				0	0				
PHF3	23469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	64423074	64423074	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_015153	exon15	c.C5590T	p.Q1864X	CCAGGTCAGCCAC		71	14	0.20	83	0	0				117	32	0.27			
CCT6P1	0	broad.mit.edu	37	7	65226641	65226641	+	RNA	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	.	.	.	.	TCTTGCGCAGAAT		154	4	0.03	96	1	0.0104166667				31	0	0.00			
ZAN	7455	broad.mit.edu	37	7	100349994	100349994	+	RNA	SNP	C	C	A	rs221829	bycluster;byhapmap	TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	ZAN_ENST00000542585,NS,carcinoma,0,6	ZAN	.	.	.	.	ATCTCCCCAGAAA		128	8	0.06	77	2	0.025974026		658	6	18	0	0.00			
PRKAR2B	5577	mdanderson.org	37	7	106685519	106685519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_002736	exon1	c.G167T	p.R56M	AGGGCAGGACCTG		13	2	0.15	9	0	0				52	0	0.00			
MOS	4342	bcgsc.ca;mdanderson.org	37	8	57025695	57025695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	MOS	NM_005372	exon1	c.C847T	p.R283W	GCTGCCGCTCCCC		87	5	0.06	106	0	0		63		0	0				
KIAA1429	25962	ucsc.edu	37	8	95538916	95538916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	KIAA1429	NM_015496	exon8	c.C1556T	p.A519V	AAAAAAGCTTCCA		86	1	0.01	86	0	0		176		94	11	0.12			
PHF2	5253	mdanderson.org	37	9	96438062	96438062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_005392	exon20	c.G2823T	p.L941F	TAAGTTGTCCCAG		20	2	0.10	28	0	0				75	0	0.00			
CCDC180	0	mdanderson.org	37	9	100092984	100092984	+	Missense_Mutation	SNP	A	A	G	rs201085376		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	KIAA1529,caecum,carcinoma,0,4	KIAA1529	NM_020893	exon18	c.A2341G	p.K781E	GAGGAGAAGCTGG		21	3	0.14	16	0	0		0	4	2	0	0.00			
SYTL5	94122	mdanderson.org	37	X	37966002	37966002	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001163334	exon11	c.G1378T	p.E460X	GGAGATGAAAAGA		113	5	0.04	91	0	0				56	0	0.00			
ARHGAP4	393	mdanderson.org	37	X	153173197	153173197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JW-01A-11D-A435-10	TCGA-S6-A8JW-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9534fce9-9120-43fd-9809-8cfd7c576dd4	c4268ca5-c111-4ee9-a0a0-1c493706c007	.	.	NM_001164741	exon23	c.C2947A	p.P983T	GCTTGGGGGTCGT		32	3	0.09	37	0	0				104	0	0.00			
