Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
AGRN	375790	mdanderson.org	37	1	984809	984809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_198576	exon25	c.G4492A	p.V1498I	GGCGGCGTACCCG		17	2	0.12	15	0	0				30	0	0.00			
SMIM1	388588	mdanderson.org	37	1	3692413	3692413	+	Silent	SNP	C	C	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001163724	exon4	c.C165T	p.G55G	GCTGGGCGGCGTG		49	3	0.06	46	0	0				19	0	0.00			
PER3	8863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7870564	7870564	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_016831	exon12	c.G1435C	p.E479Q	TACATTGAGTCAA		122	39	0.32	111	0	0				14	4	0.29			
BAI2	576	broad.mit.edu	37	1	32221746	32221746	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	BAI2,NS,carcinoma,0,1	BAI2	NM_001703	exon4	c.C692G	p.A231G	GAGCCGGCCCCCG		54	17	0.31	71	21	0.2957746479		128	1	3	0	0.00			
CLDN19	149461	mdanderson.org	37	1	43201580	43201580	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001123395	exon4	c.T595C	p.Y199H	GCCGATAGGGCTG		44	3	0.07	69	0	0				26	0	0.00			
CYP4Z2P	0	broad.mit.edu	37	1	47325179	47325179	+	RNA	SNP	C	C	A	rs112740312	byfrequency	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	.	.	.	.	AGCTCTCTCCTCT		64	5	0.08	52	1	0.0192307692				0	0				
CYP4Z2P	0	broad.mit.edu	37	1	47325212	47325212	+	RNA	SNP	G	G	A	rs71645846		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	.	.	.	.	AGAATGGCCCTAG		93	5	0.05	82	1	0.012195122				0	0				
LPHN2	23266	broad.mit.edu	37	1	82433827	82433827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	LPHN2_ENST00000370725,NS,carcinoma,0,2	LPHN2	NM_012302	exon12	c.T2416C	p.C806R	ACAACGTGTGCAT		132	5	0.04	149	0	0		464	2	18	2	0.11	rescued with RNA-seq		
.	100288142	ucsc.edu	37	1	148346633	148346633	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	.	.	.	.	CAAAACATCTCTC		26	6	0.23	19	3	0.1578947368				4	3	0.75			
HRNR	388697	broad.mit.edu	37	1	152188602	152188604	+	In_Frame_Del	DEL	GTC	GTC	-	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	GTC	GTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	HRNR	NM_001009931	exon3	c.5501_5503del	p.1834_1835del	ACCCATGTCGGCC		553	12	0.02	592	0	0		403		2	0	0.00			
PEX19	5824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160254906	160254906	+	Silent	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_002857	exon1	c.C9A	p.A3A	CTCAGCGGCGGCC		53	14	0.26	69	0	0				34	7	0.21			
RGS1	5996	mdanderson.org	37	1	192544965	192544965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	RGS1_ENST00000367459,NS,carcinoma,-1,2	RGS1_ENST00000367459	NM_002922	exon1	c.C43T	p.P15S	AAAATGCCAGGAA		113	5	0.04	107	0	0		-1	2	28	0	0.00			
.	337872	bcgsc.ca	37	1	228651817	228651817	+	RNA	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	.	.	.	.	CCAATTGAATCAC		31	8	0.26	41	0	0				6	2	0.33			
SIPA1L2	57568	mdanderson.org	37	1	232561342	232561342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_020808	exon16	c.C4623A	p.S1541R	TCTCAGGCTCCCC		37	3	0.08	36	0	0				188	0	0.00			
AKR1C4	1109	hgsc.bcm.edu	37	10	5242213	5242213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001818	exon2	c.G154T	p.A52S	GATTCTGCTTATT		105	5	0.05	105	0	0				0	0				
.	0	bcgsc.ca	37	10	79493285	79493285	+	RNA	SNP	G	G	A	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	.	.	.	.	CCCCAAGCACACA		88	17	0.19	75	0	0				0	0				
ABCC2	1244	hgsc.bcm.edu;mdanderson.org	37	10	101563999	101563999	+	Missense_Mutation	SNP	C	C	T	rs201399138		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	ABCC2,NS,carcinoma,0,2	ABCC2	NM_000392	exon10	c.C1433T	p.A478V	TTAATGCGATACT		80	4	0.05	102	0	0	0.001	0	2	1	0	0.00			
C10orf2	56652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102753124	102753124	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_021830	exon5	c.C1912G	p.L638V	GCCCGGCTCAAGA		134	46	0.34	111	0	0				203	70	0.34			
OR52I2	143502	broad.mit.edu;mdanderson.org	37	11	4608061	4608061	+	Missense_Mutation	SNP	C	C	T	rs200571706	bycluster	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	OR52I2,caecum,carcinoma,0,1	OR52I2	NM_001005170	exon1	c.C19T	p.R7W	ATCTTACGGGATT		68	4	0.06	94	0	0		50	1	0	0				
ABTB2	25841	mdanderson.org	37	11	34186251	34186251	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_145804	exon9	c.C1970A	p.S657X	GCAGCTGAGTGGC		47	3	0.06	70	0	0				1	0	0.00			
PHF21A	51317	mdanderson.org	37	11	45955621	45955621	+	Silent	SNP	C	C	T	rs199802844	bycluster;by1000genomes	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001101802	exon18	c.G1941A	p.P647P	GCAGTCCGGGCCA		42	3	0.07	61	0	0	0.001			93	0	0.00			
MAP3K11	4296	mdanderson.org	37	11	65380778	65380778	+	Silent	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_002419	exon1	c.C450A	p.P150P	CTCATCGGGGTCC		42	3	0.07	72	0	0				60	0	0.00			
KRTAP5-7	440050	ucsc.edu	37	11	71238418	71238418	+	Silent	SNP	T	T	C	rs201675734	bycluster;byfrequency	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	KRTAP5-7	NM_001012503	exon1	c.T72C	p.C24C	GGGCTGTGGCTCT		118	25	0.21	156	13	0.0833333333		23		0	0				
KIAA1731	85459	mdanderson.org	37	11	93433165	93433165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_033395	exon15	c.G5087T	p.S1696I	TTTTGAGTTTTTC		49	3	0.06	91	0	0				17	0	0.00			
BUD13	84811	mdanderson.org	37	11	116633328	116633328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_032725	exon4	c.C977A	p.P326H	CGTGGAGGAGAGA		48	3	0.06	111	0	0				32	0	0.00			
VWA5A	4013	mdanderson.org	37	11	123988930	123988930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_014622	exon4	c.G281T	p.G94V	CCCAGGGCCACCA		69	5	0.07	171	0	0				5	0	0.00			
GLB1L2	89944	mdanderson.org	37	11	134238570	134238570	+	Missense_Mutation	SNP	G	G	T	rs148929536	byfrequency;alternate_allele	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_138342	exon10	c.G922T	p.A308S	GTGGACGCCGGCT		17	2	0.12	68	0	0				11	0	0.00			
ITPR2	3709	broad.mit.edu	37	12	26640046	26640046	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	ITPR2	NM_002223	exon40	c.5509delA	p.R1837fs	CGTCCCTTTTTTT		1267	7	0.01	140	0	0		270		94	0	0.00			
ARNTL2	56938	broad.mit.edu	37	12	27543058	27543058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	ARNTL2	NM_020183	exon9	c.G805T	p.A269S	CTCCACGCTGGAA		1142	6	0.01	125	0	0		54		422	0	0.00			
DDX11	1663	broad.mit.edu	37	12	31238044	31238044	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	DDX11	NM_030653	exon5	c.622delA	p.K208fs	GAGGAGAAAAAGG		1932	8	0.00	307	0	0		188		1067	0	0.00			
FAM186A	121006	mdanderson.org	37	12	50748635	50748635	+	Silent	SNP	T	T	C	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001145475	exon4	c.A1980G	p.P660P	GCCATCTGGACTT		44	3	0.07	59	0	0				1	0	0.00			
CPSF6	11052	mdanderson.org	37	12	69653285	69653285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_007007	exon7	c.G1277T	p.S426I	TCTCAAGCAGTGC		49	3	0.06	50	0	0				339	0	0.00			
.	0	broad.mit.edu	37	12	70508234	70508236	+	RNA	DEL	ACA	ACA	-	rs76660044	alternate_allele	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	ACA	ACA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	.	.	.	.	ATAGCTACAACAA		7	7	1.00	4	0	0				0	0				
DDX54	79039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113617043	113617043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	DDX54,NS,carcinoma,0,1	DDX54	NM_024072	exon4	c.C469T	p.R157W	TGAGCCGCTCGAA		66	19	0.29	68	0	0		0	1	231	83	0.36			
FKBP3	2287	bcgsc.ca	37	14	45590789	45590789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	FKBP3	NM_002013	exon4	c.A353G	p.K118R	TCTCCCTTTTTCA		40	4	0.10	71	0	0		21		301	0	0.00			
ZFYVE26	23503	mdanderson.org	37	14	68221866	68221866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_015346	exon37	c.G6888T	p.K2296N	GTGGTCCTTGGCC		60	5	0.08	119	1	0.0084033613				83	0	0.00			
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42003218	42003218	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001080541	exon8	c.T2755G	p.L919V	TCCATTTTACCAT		117	28	0.24	86	0	0				28	6	0.21			
KIAA1199	57214	broad.mit.edu	37	15	81217004	81217004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	KIAA1199	NM_018689	exon17	c.T2245C	p.S749P	GAGGCCTCTGCCA		125	5	0.04	92	0	0		118		0	0				
RHBDF1	64285	mdanderson.org	37	16	109430	109430	+	Missense_Mutation	SNP	G	G	A	rs375953787		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_022450	exon15	c.C1880T	p.T627M	CAGAGCGTGGCCT		48	3	0.06	62	0	0				56	0	0.00			
HAGH	3029	mdanderson.org	37	16	1859331	1859331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	HAGH,bladder,carcinoma,+1,1	HAGH	NM_005326	exon9	c.C880T	p.R294W	CGGCCCGCATGGT		36	3	0.08	32	0	0		1	1	149	0	0.00			
CASKIN1	57524	mdanderson.org	37	16	2231335	2231335	+	Silent	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_020764	exon18	c.C2034A	p.P678P	GCTGGAGGGCTTC		26	3	0.12	29	0	0				28	0	0.00			
ATXN2L	11273	mdanderson.org	37	16	28846413	28846413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_148416	exon19	c.G2468T	p.R823L	ACCCACGCATGCT		55	3	0.05	51	0	0				846	0	0.00			
.	0	bcgsc.ca	37	16	32914986	32914986	+	RNA	SNP	G	G	A	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	.	.	.	.	TCTCCTGTGCAGC		7	5	0.71	22	0	0				8	0	0.00			
.	440348	bcgsc.ca	37	16	74425793	74425793	+	Missense_Mutation	SNP	T	T	C	rs199839508	bycluster	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	.	.	.	.	GAACAATCGCCCA		277	18	0.06	305	9	0.0295081967				150	0	0.00			
ANKRD11	29123	mdanderson.org	37	16	89341536	89341536	+	Silent	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_013275	exon10	c.C7534A	p.R2512R	TTCCCCGGACGGC		43	3	0.07	44	0	0				277	0	0.00			
NLRP1	22861	mdanderson.org	37	17	5436697	5436697	+	Silent	SNP	C	C	A	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_014922	exon10	c.G3060T	p.A1020A	GGAAGCCGCCCTC		34	3	0.09	30	0	0				20	0	0.00			
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		145	6	0.04	191	13	0.0680628272				155	92	0.59			
MPRIP	23164	mdanderson.org	37	17	17079783	17079783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_015134	exon20	c.A2753G	p.Q918R	TGAAACAGGAGAT		33	3	0.09	35	0	0				163	0	0.00			
LRRC37B	114659	mdanderson.org	37	17	30349013	30349013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_052888	exon1	c.A848G	p.E283G	AGGAAGAAGCCCC		42	3	0.07	51	0	0				22	0	0.00			
TCF3	6929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1612333	1612333	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001136139	exon17	c.T1686G	p.I562M	CTCGTTAATATCC		145	39	0.27	157	0	0				124	68	0.55			
MYO9B	4650	mdanderson.org	37	19	17316915	17316915	+	Silent	SNP	G	G	T	rs367648233	alternate_allele	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001130065	exon32	c.G5211T	p.S1737S	CAAGTCGGGTGCT		43	3	0.07	50	0	0				112	0	0.00			
ANKLE1	126549	broad.mit.edu	37	19	17397500	17397501	+	Frame_Shift_Del	DEL	TT	TT	-	rs10606406	alternate_allele	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	TT	TT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	ANKLE1	.	.	.	.	TGTGTGTTTGTGT		14	13	0.93	13	0	0		27		4	0	0.00			
C19orf54	284325	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	41250532	41250532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	C19orf54	NM_198476	exon3	c.T449C	p.V150A	AGGGGGACGCCAC		74	4	0.05	77	1	0.012987013		13		91	0	0.00			
MYH14	79784	mdanderson.org	37	19	50760599	50760599	+	Silent	SNP	C	C	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001145809	exon18	c.C2088T	p.D696D	GGGCGACGGCCCA		44	3	0.07	44	0	0				36	0	0.00			
SHANK1	50944	mdanderson.org	37	19	51172415	51172415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	SHANK1,NS,carcinoma,-1,1	SHANK1	NM_016148	exon22	c.C2802A	p.S934R	AGGTGTGCTGTAG		19	2	0.11	35	0	0		-1	1	2	0	0.00			
ZNF606	80095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58490600	58490600	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_025027	exon7	c.C1448G	p.P483R	ACATAAGGTTTTT		71	11	0.15	79	0	0				43	19	0.44			
.	400986	bcgsc.ca	37	2	96525702	96525702	+	Missense_Mutation	SNP	C	C	T	rs71255701		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	.	.	.	.	AGTACACTAGCCT		112	8	0.07	106	3	0.0283018868				7	0	0.00			
NMS	129521	bcgsc.ca;mdanderson.org	37	2	101095866	101095866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	NMS	NM_001011717	exon6	c.C313T	p.R105W	AACAGGCGGATGA		102	5	0.05	93	0	0		26		0	0				
INHBB	3625	broad.mit.edu	37	2	121106822	121106822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	INHBB	NM_002193	exon2	c.T596C	p.V199A	TGCGGGTCAAAGT		134	5	0.04	154	0	0		29		1	0	0.00			
ANKRD30BL	554226	broad.mit.edu	37	2	132919099	132919099	+	Silent	SNP	C	C	T	rs199974298	bycluster	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	ANKRD30BL	.	.	.	.	TGTCGTCTTCTTC		74	7	0.09	70	0	0		36		0	0				
ANKRD30BL	554226	broad.mit.edu	37	2	132919171	132919171	+	Silent	SNP	A	A	G	rs199695856	bycluster	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	ANKRD30BL	.	.	.	.	ATCCCCATGGTGA		138	9	0.07	153	1	0.0065359477		36		0	0				
ANKRD30BL	554226	broad.mit.edu	37	2	132919192	132919192	+	Silent	SNP	G	G	A	rs111295191	bycluster	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	ANKRD30BL	.	.	.	.	AGAGTCGTTGTTG		133	6	0.05	180	2	0.0111111111		36		0	0				
USP40	55230	hgsc.bcm.edu	37	2	234394246	234394246	+	Silent	SNP	C	C	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	USP40_ENST00000450966,NS,carcinoma,0,2	USP40_ENST00000450966	NM_018218	exon29	c.G3468A	p.K1156K	TTTTTTCTTTTTC		183	9	0.05	161	1	0.0062111801		0	2	26	0	0.00			
PYGB	5834	mdanderson.org	37	20	25277029	25277029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_002862	exon20	c.G2403T	p.K801N	CAAGAAGGTCATC		49	3	0.06	66	0	0				934	1	0.00			
FAM182B	0	broad.mit.edu	37	20	25755549	25755549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	FAM182B,colon,carcinoma,0,1	FAM182B	.	.	.	.	CTGCAGCCTTCCT		48	3	0.06	81	0	0		6	1	45	5	0.11			
CDH22	64405	mdanderson.org	37	20	44815231	44815231	+	Silent	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	CDH22,NS,carcinoma,0,1	CDH22	NM_021248	exon10	c.C1659A	p.I553I	ACCTTGGATGTCA		44	3	0.07	63	0	0		0	1	0	0				
APCDD1L	164284	mdanderson.org	37	20	57042182	57042182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_153360	exon3	c.C721T	p.R241C	GCGGGCGCTGGTA		29	3	0.10	29	0	0				0	0				
NEFH	4744	hgsc.bcm.edu	37	22	29885638	29885638	+	Missense_Mutation	SNP	T	T	A	rs190692435	bycluster	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	NEFH,NS,lymphoid_neoplasm,0,1	NEFH	NM_021076	exon4	c.T2009A	p.V670E	CCCCAGTGAAGGC		229	12	0.05	169	0	0		0	1	727	18	0.02			
DEPDC5	9681	bcgsc.ca;mdanderson.org	37	22	32193622	32193622	+	Silent	SNP	T	T	C	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	DEPDC5	NM_001242897	exon13	c.T804C	p.T268T	ATGGACTTCACTT		94	5	0.05	92	0	0		266		22	0	0.00			
IL17REL	400935	broad.mit.edu;mdanderson.org	37	22	50438258	50438258	+	Splice_Site	SNP	C	C	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	IL17REL	NM_001001694	exon7	c.G473A	p.R158Q	CTCACTCGCACAG		33	5	0.15	34	0	0		21		0	0				
MST1	4485	ucsc.edu	37	3	49725038	49725038	+	Silent	SNP	G	G	C	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	MST1	NM_020998	exon3	c.C306G	p.P102P	CGTGTGGGGCGAG		86	16	0.19	100	3	0.03		84		24	0	0.00			
MST1	4485	ucsc.edu;bcgsc.ca	37	3	49725086	49725086	+	Silent	SNP	G	G	A	rs201833731	bycluster;byfrequency	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	MST1	NM_020998	exon3	c.C258T	p.N86N	GCTCACGTTGTAG		74	13	0.18	87	2	0.0229885057		84		31	0	0.00			
SLC12A8	84561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124909295	124909295	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_024628	exon3	c.C122G	p.T41S	TCCCAGGTCCCAA		223	54	0.24	255	0	0				12	3	0.25			
AMOTL2	51421	ucsc.edu;bcgsc.ca	37	3	134080365	134080365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	AMOTL2	NM_016201	exon6	c.C1564A	p.R522S	GTGCACGCAGGGC		37	4	0.11	55	0	0		52		16	0	0.00			
MUC4	4585	mdanderson.org	37	3	195509071	195509071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_018406	exon2	c.C9380A	p.S3127Y	GCTGAGGAAGTGT		43	7	0.16	54	2	0.037037037				1	0	0.00			
FIP1L1	81608	hgsc.bcm.edu	37	4	54257228	54257228	+	Silent	SNP	A	A	G	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_030917	exon8	c.A558G	p.K186K	CTGGAAAGCTTAC		365	85	0.23	186	0	0				224	0	0.00			
BMP3	651	mdanderson.org	37	4	81967030	81967030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001201	exon2	c.G455T	p.C152F	GAGGATGCTCCCA		49	3	0.06	60	0	0				0	0				
LECT2	3950	mdanderson.org	37	5	135287021	135287021	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_002302	exon3	c.C180A	p.C60X	AGCAGAGCACAAG		51	3	0.06	71	0	0				9	0	0.00			
PCDHGA2	56113	mdanderson.org	37	5	140720516	140720516	+	Missense_Mutation	SNP	C	C	T	rs61742830	byfrequency;alternate_allele	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_032009	exon1	c.C1978T	p.L660F	GTCACGCTCACCG		49	2	0.04	76	0	0				12	0	0.00			
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	12121882	12121883	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	TA	TA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	HIVEP1,NS,carcinoma,0,1	HIVEP1	NM_002114	exon4	c.1853_1854del	p.618_618del	GGAGACTAATGAG		90	26	0.29	80	0	0		242		10	1	0.10			
SIRT5	23408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	13588626	13588626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_012241	exon4	c.G179T	p.G60V	GAGCTGGTGTTAG		152	43	0.28	146	0	0				83	23	0.28			
SLC17A4	10050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	25777039	25777039	+	Splice_Site	SNP	G	G	A	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	SLC17A4,NS,carcinoma,-1,1	SLC17A4	NM_005495	exon10	c.1121-1G>A	.	ACCCCAGGGGTTC		104	31	0.30	116	0	0		-1	1	0	0				
HLA-H	3136	hgsc.bcm.edu	37	6	29857993	29857993	+	RNA	SNP	T	T	A	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	.	.	.	.	ACCTTATGGCCCT		54	6	0.11	54	0	0				3	3	1.00			
MUC21	394263	broad.mit.edu	37	6	30954534	30954534	+	Silent	SNP	T	T	A	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	MUC21,NS,carcinoma,0,3	MUC21	NM_001010909	exon2	c.T582A	p.T194T	CAGCACTGCCACC		48	5	0.10	41	2	0.0487804878		98	3	26	0	0.00			
GTPBP2	54676	mdanderson.org	37	6	43592665	43592665	+	Silent	SNP	G	G	T	rs143185915	alternate_allele	TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_019096	exon6	c.C840A	p.P280P	GCAGTCGGGGCAG		48	3	0.06	81	0	0				224	0	0.00			
NYAP1	222950	mdanderson.org	37	7	100086571	100086571	+	Silent	SNP	G	G	A	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_173564	exon4	c.G1227A	p.P409P	GACACCGTTGCCA		31	3	0.10	22	0	0				20	0	0.00			
RELN	5649	mdanderson.org	37	7	103275912	103275912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_005045	exon19	c.C2425A	p.L809I	CCAGGAGTTTCCA		43	3	0.07	31	0	0				1	0	0.00			
CPSF1	29894	mdanderson.org	37	8	145622524	145622524	+	Silent	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_013291	exon23	c.C2490A	p.G830G	GGCCTCGCCCTGT		38	4	0.11	51	0	0				229	0	0.00			
FOCAD	54914	mdanderson.org	37	9	20948910	20948910	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_017794	exon34	c.G3859T	p.E1287X	GGCTCTGAAGGGG		43	3	0.07	75	0	0				97	0	0.00			
CRB2	286204	mdanderson.org	37	9	126125220	126125220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_173689	exon2	c.G171T	p.E57D	TACCGAGAGTGGT		38	3	0.08	57	0	0				0	0				
TRUB2	26995	mdanderson.org	37	9	131073824	131073824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_015679	exon6	c.C517A	p.Q173K	CCTTCTGATGGGA		49	3	0.06	99	0	0				120	0	0.00			
RAPGEF1	2889	mdanderson.org	37	9	134503405	134503405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_198679	exon9	c.T1099C	p.S367P	AGGGGGAGAGGCG		23	2	0.09	34	0	0				122	0	0.00			
TLR7	51284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12904184	12904184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_016562	exon3	c.G557T	p.R186L	ATTATCGAAATCC		92	40	0.43	82	0	0				2	0	0.00			
GNL3L	54552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54584946	54584946	+	Silent	SNP	C	C	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001184819	exon15	c.C1524T	p.R508R	CCACCGCCCTAAG		111	36	0.32	80	0	0				55	24	0.44			
TAF7L	54457	mdanderson.org	37	X	100533046	100533046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_024885	exon8	c.G826A	p.V276I	TACTTACGGCTTC		41	3	0.07	29	0	0				0	0				
GLA	2717	broad.mit.edu;mdanderson.org	37	X	100653456	100653456	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	GLA	NM_000169	exon6	c.C901G	p.R301G	TGTGTCGGAGGTC		54	4	0.07	52	0	0		43		97	4	0.04			
BRS3	680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135572573	135572573	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_001727	exon2	c.T716G	p.L239W	ATTCCTTGATTGC		64	21	0.33	55	0	0				0	0				
GABRE	2564	mdanderson.org	37	X	151123960	151123960	+	Silent	SNP	G	G	T	novel		TCGA-S6-A8JY-01A-11D-A435-10	TCGA-S6-A8JY-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2dbd6c3e-58fc-49e3-a94a-edf53c841181	8ba463e3-b477-4c63-9649-3e10bb8b1704	.	.	NM_004961	exon8	c.C1017A	p.A339A	ATCCAAGGCTGTG		39	3	0.08	34	0	0				5	0	0.00			
