Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
RUNX3	864	mdanderson.org	37	1	25228682	25228682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001031680	exon6	c.C1221A	p.S407R	GCTGTGGCTGCCG		42	3	0.07	40	0	0				43	0	0.00			
ANKRD20A12P	0	broad.mit.edu	37	1	142699482	142699483	+	RNA	INS	-	-	TG	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	.	.	.	.	TAATTATTATGTT		18	2	0.11	14	0	0				0	0				
IVL	3713	broad.mit.edu	37	1	152883011	152883011	+	Silent	SNP	T	T	A	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	IVL	NM_005547	exon2	c.T738A	p.S246S	GCTCTCTGAGCAG		76	5	0.07	65	0	0		100		0	0				
THBS3	7059	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155172077	155172077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	THBS3	NM_007112	exon9	c.T1073C	p.I358T	TAGTCAATGCCCA		117	18	0.15	58	1	0.0172413793		70		18	4	0.22			
GPATCH4	54865	hgsc.bcm.edu	37	1	156568272	156568272	+	Silent	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_015590	exon3	c.C109A	p.R37R	CCTTCCGGCCGAG		92	4	0.04	83	0	0				212	0	0.00			
SMG7	9887	broad.mit.edu	37	1	183514071	183514071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	SMG7,colon,carcinoma,0,1	SMG7	NM_173156	exon16	c.C1994T	p.P665L	GGTTTCCGCCCCC		129	3	0.02	117	0	0		165	1	210	1	0.00			
C1orf65	164127	mdanderson.org	37	1	223566845	223566845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_152610	exon1	c.C28T	p.P10S	TCCCAGCCGCCCT		47	3	0.06	34	0	0				0	0				
SDE2	163859	broad.mit.edu	37	1	226186983	226186983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_152608	exon1	c.C31A	p.R11S	GGCCGCGAATCCA		107	4	0.04	75	0	0				32	0	0.00			
DNAJC12	56521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	69571358	69571358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_021800	exon3	c.G221A	p.R74H	TCATAGCGGGCTC		173	19	0.11	140	0	0				5	0	0.00			
VENTX	27287	mdanderson.org	37	10	135051634	135051634	+	Silent	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_014468	exon1	c.G216T	p.L72L	AAATCTGCCTGCG		44	3	0.07	50	0	0				439	2	0.00			
CHID1	66005	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	903029	903029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	CHID1	NM_001142676	exon4	c.G269A	p.R90H	TAGCTGCGATGCT		52	5	0.10	40	0	0		29		227	0	0.00			
NAT10	55226	broad.mit.edu	37	11	34149080	34149080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	NAT10	NM_024662	exon12	c.T1178C	p.I393T	CCGCCATCCCCCT		174	3	0.02	135	3	0.0222222222		78		92	0	0.00			
RAPSN	5913	mdanderson.org	37	11	47469559	47469559	+	Silent	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_005055	exon2	c.G336A	p.L112L	ACCAGGCAGCCCA		55	3	0.05	43	0	0				0	0				
.	0	bcgsc.ca	37	11	62815368	62815368	+	RNA	SNP	G	G	A	rs7125680	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	.	.	.	.	GGTGCAGCATGCC		40	7	0.18	22	0	0				0	0				
SLC22A24	283238	hgsc.bcm.edu	37	11	62848443	62848443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	SLC22A24_ENST00000417740,NS,carcinoma,-2,1	SLC22A24_ENST00000417740	NM_001136506	exon9	c.C1547A	p.P516Q	GTTTCTGGAAGGA		78	4	0.05	90	0	0		-2	1	0	0				
TBX10	347853	mdanderson.org	37	11	67399845	67399845	+	Missense_Mutation	SNP	C	C	T	rs146079895		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_005995	exon7	c.G812A	p.R271Q	TGACTCCGGGCTG		38	3	0.08	35	0	0	0			2	0	0.00			
MLL2	8085	broad.mit.edu	37	12	49435162	49435162	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	MLL2	NM_003482	exon31	c.A6391C	p.T2131P	CGGGGGTAGTGGG		82	16	0.20	50	12	0.24		1173		25	3	0.12			
KRT79	338785	mdanderson.org	37	12	53227722	53227722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_175834	exon1	c.C323A	p.A108D	GGACAAGCAGGCC		108	5	0.05	69	0	0				0	0				
CKAP4	10970	broad.mit.edu;mdanderson.org	37	12	106641269	106641269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	CKAP4	NM_006825	exon1	c.G361A	p.A121T	AGAAAGCGGCCGC		22	4	0.18	13	0	0		49		111	1	0.01			
HECTD4	283450	mdanderson.org	37	12	112664471	112664471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001109662	exon44	c.C6544A	p.L2182I	CTACTAGGTTAAG		46	3	0.07	26	0	0				33	0	0.00			
SPERT	220082	broad.mit.edu;mdanderson.org	37	13	46288213	46288213	+	Silent	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	SPERT	NM_152719	exon3	c.C1053T	p.D351D	GCCCGACGGCTGC		25	3	0.12	33	0	0		54		0	0				
BIVM-ERCC5	0	mdanderson.org	37	13	103528227	103528227	+	Missense_Mutation	SNP	G	G	T	rs55843971		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	ERCC5,NS,carcinoma,-2,1	ERCC5	NM_001204425	exon23	c.G4897T	p.A1633S	AGACGTGCGAGGG		21	2	0.10	20	0	0		-2	1	64	0	0.00			
NYNRIN	57523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24878059	24878059	+	Silent	SNP	G	G	A	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_025081	exon4	c.G1059A	p.G353G	CCCGGGGCCAGCC		130	23	0.18	104	0	0				15	5	0.33			
FOXA1	3169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	38060906	38060906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_004496	exon2	c.C1083A	p.S361R	CCCGGAGCTTATG		53	10	0.19	24	0	0				0	0				
SEL1L	6400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81969081	81969081	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001244984	exon6	c.C761G	p.S254C	TTGGGAGAGCCTT		102	12	0.12	48	0	0				25	2	0.08			
.	283685	broad.mit.edu	37	15	23685749	23685751	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	CTC	CTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	.	.	.	.	CATCTTCTCCTCC		19	7	0.37	16	0	0				0	0				
MEF2A	4205	hgsc.bcm.edu	37	15	100211846	100211846	+	Missense_Mutation	SNP	G	G	A	rs75705863	bycluster	TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	MEF2A_ENST00000354410,NS,carcinoma,+1,1	MEF2A_ENST00000354410	NM_005587	exon5	c.G380A	p.R127Q	TGATGCGGAATCA		40	4	0.10	20	0	0		1	1	5	0	0.00			
NPW	283869	mdanderson.org	37	16	2070149	2070149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001099456	exon1	c.G247A	p.A83T	GAACCCGCAGCCC		16	2	0.13	9	0	0				3	0	0.00			
PKD1	5310	mdanderson.org	37	16	2160443	2160443	+	Silent	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001009944	exon15	c.C4725A	p.G1575G	ATCACTGCCGGCC		51	3	0.06	51	0	0				25	0	0.00			
ZNF205	7755	mdanderson.org	37	16	3169513	3169513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	ZNF205,NS,carcinoma,0,1	ZNF205	NM_001042428	exon7	c.G852T	p.E284D	CAACGAGGAGGAG		20	2	0.10	33	0	0		0	1	54	0	0.00			
ITPRIPL2	162073	mdanderson.org	37	16	19127279	19127279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001034841	exon1	c.C1496T	p.T499M	TGTCCACGTGGCA		46	3	0.07	31	0	0				29	0	0.00			
MYLPF	29895	broad.mit.edu	37	16	30389139	30389139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	MYLPF	NM_013292	exon7	c.T428C	p.F143S	CGGCCTTCCCCCC		172	5	0.03	142	0	0		12		2	0	0.00			
RNF40	9810	ucsc.edu	37	16	30778100	30778100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	RNF40	NM_014771	exon11	c.G1332T	p.E444D	CACAGAGGTCATT		41	4	0.10	29	0	0		83		130	0	0.00			
.	0	broad.mit.edu	37	16	32070612	32070612	+	RNA	SNP	A	A	C	rs368458790	bycluster	TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	.	.	.	.	TCCTGCAAGGCTT		48	9	0.19	21	0	0				0	0				
GFOD2	81577	mdanderson.org	37	16	67709571	67709571	+	Silent	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_030819	exon3	c.G645A	p.R215R	GACGTGCCGGATG		30	3	0.10	23	0	0				24	0	0.00			
PRMT7	54496	broad.mit.edu	37	16	68358698	68358698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	PRMT7,colon,carcinoma,0,1	PRMT7	NM_019023	exon5	c.C245T	p.A82V	TGATGGCGGTCAC		188	4	0.02	153	0	0		51	1	67	1	0.01			
CAMKK1	84254	ucsc.edu	37	17	3788920	3788920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	CAMKK1	NM_032294	exon2	c.C62T	p.A21V	ATGGCTGCCACCC		43	4	0.09	33	0	0		70		6	0	0.00			
DLG4	1742	mdanderson.org	37	17	7100103	7100103	+	Silent	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001365	exon11	c.G1185A	p.E395E	CCGCAGCTCCCCA		38	3	0.08	41	0	0				16	0	0.00			
SENP3	26168	broad.mit.edu;mdanderson.org	37	17	7466636	7466636	+	Silent	SNP	G	G	A	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	SENP3	NM_015670	exon2	c.G243A	p.E81E	AGAAGAGGAGGAG		94	4	0.04	75	0	0		18		124	0	0.00			
RAB34	83871	hgsc.bcm.edu	37	17	27041699	27041699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	RAB34,NS,carcinoma,0,1	RAB34	NM_001144943	exon11	c.C913A	p.L305I	CAGTTAGGTAGAG		74	3	0.04	80	0	0		0	1	137	0	0.00			
GFAP	2670	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	42989136	42989136	+	Silent	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	GFAP	NM_001131019	exon5	c.C810A	p.R270R	CGCGTTGCGGGCA		41	4	0.10	33	0	0		88		0	0				
COG1	9382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71193472	71193472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_018714	exon4	c.C850T	p.P284S	CCAGATCCAGCCC		66	22	0.33	55	0	0				80	50	0.63			
KIF19	124602	mdanderson.org	37	17	72350514	72350514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_153209	exon18	c.C2522T	p.A841V	ATGCTGCCAGTGA		35	3	0.09	27	0	0				3	0	0.00			
UNK	85451	mdanderson.org	37	17	73808667	73808667	+	Splice_Site	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001080419	exon4	c.622+1G>T	.	GGCAAGGTACAGG		50	3	0.06	43	0	0				0	0				
MBD1	4152	mdanderson.org	37	18	47800070	47800070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001204137	exon13	c.C1385A	p.A462D	GTTGGAGCCTGGG		33	3	0.09	52	0	0				106	0	0.00			
ZNRF4	148066	mdanderson.org	37	19	5455516	5455516	+	Missense_Mutation	SNP	G	G	T	rs375127837	alternate_allele	TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_181710	exon1	c.G14T	p.R5L	TCTGCCGTCCGGA		42	3	0.07	40	0	0				0	0				
WDR87	83889	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	38385792	38385792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_031951	exon4	c.T434C	p.L145P	ATTTGGAGGCCCG		114	10	0.09	104	0	0				2	0	0.00			
CCDC155	147872	mdanderson.org	37	19	49920743	49920743	+	Silent	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_144688	exon20	c.C1665T	p.C555C	GCTCTGCTACCTC		37	3	0.08	27	0	0				10	0	0.00			
BIRC6	57448	broad.mit.edu;mdanderson.org	37	2	32718725	32718725	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	BIRC6	NM_016252	exon45	c.C8459G	p.S2820X	TACTTTCAACTGA		63	6	0.10	47	0	0		838		100	24	0.24			
.	0	broad.mit.edu	37	2	91887904	91887905	+	RNA	INS	-	-	T	rs369805878	alternate_allele	TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	.	.	.	.	ATTTTCCATTTTT		171	12	0.07	111	3	0.027027027				0	0				
FASTKD1	79675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170403079	170403079	+	Silent	SNP	G	G	A	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_024622	exon8	c.C1350T	p.N450N	ACTCAGGTTATTT		348	44	0.13	266	0	0				70	11	0.16			
GAD1	2571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	171687483	171687483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_000817	exon5	c.G328A	p.E110K	AACGGTGAGGAGC		121	12	0.10	87	0	0				0	0				
STK11IP	114790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	220467428	220467428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_052902	exon7	c.G581A	p.R194H	CTCAGCGCCTCTT		195	14	0.07	118	0	0				64	8	0.13			
FRG1B	284802	mdanderson.org	37	20	29633902	29633902	+	RNA	SNP	C	C	A	rs145072022		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	.	.	.	.	AGAGAACCAAATT		261	11	0.04	139	1	0.0071942446				36	0	0.00			
SLC2A10	81031	ucsc.edu;bcgsc.ca	37	20	45362413	45362413	+	Silent	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	SLC2A10	NM_030777	exon5	c.C1566T	p.G522G	CTTTGGCCACAGG		37	4	0.11	53	0	0		75		28	0	0.00			
LAMA5	3911	mdanderson.org	37	20	60922017	60922017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_005560	exon7	c.C1024A	p.Q342K	GCTGCTGATTGAA		39	3	0.08	58	0	0				22	0	0.00			
KRTAP10-4	386672	ucsc.edu	37	21	45993851	45993851	+	Silent	SNP	C	C	T	rs543299		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	KRTAP10-4	NM_198687	exon1	c.C216T	p.C72C	GACCTGCGAGCCC		33	9	0.27	13	2	0.1538461538		44		0	0				
CARD10	29775	mdanderson.org	37	22	37887324	37887324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_014550	exon20	c.C2972A	p.A991D	TCATGGGCGGGCA		13	2	0.15	14	0	0				94	0	0.00			
PHLDB2	90102	broad.mit.edu	37	3	111603922	111603922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	PHLDB2	NM_001134437	exon3	c.C1079T	p.A360V	TCCCTGCCAGTCC		158	4	0.03	102	0	0		449		10	0	0.00			
TM4SF19-TCTEX1D2	0	hgsc.bcm.edu	37	3	196043134	196043134	+	RNA	SNP	G	G	C	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	.	.	.	.	CAGTCGGTGACTC		59	18	0.31	44	0	0				2	0	0.00			
DGKQ	1609	mdanderson.org	37	4	961070	961070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001347	exon9	c.C1067A	p.A356D	TCACAGGCCTGAG		19	2	0.11	8	0	0				6	0	0.00			
RUFY3	22902	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	4	71659590	71659590	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001037442	exon13	c.C1426T	p.Q476X	AGTCTGCAGCTGG		226	23	0.10	153	0	0				42	5	0.12			
ATOH1	474	broad.mit.edu	37	4	94750181	94750181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	ATOH1,rectum,carcinoma,0,1	ATOH1	NM_005172	exon1	c.C104A	p.P35Q	CGCCGCCGCAGCC		172	4	0.02	156	1	0.0064102564		40	1	0	0				
POU4F2	5458	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	147560512	147560512	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	POU4F2,NS,carcinoma,0,1	POU4F2	NM_004575	exon1	c.A220T	p.S74C	AGCTCCAGCAGCA		75	8	0.11	70	0	0		0	1	0	0				
SRP19	7905	ucsc.edu	37	5	112228215	112228215	+	Silent	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	SRP19	.	.	.	.	GTTTAACGGACGA		282	2	0.01	242	0	0		12		24	16	0.67	rescued with RNA-seq		
IK	3550	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140032730	140032730	+	Splice_Site	SNP	G	G	A	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	IK_ENST00000417647,NS,carcinoma,0,1	IK	NM_006083	exon5	c.404+1G>A	.	TGAGGCGTGAGTA		34	4	0.12	30	0	0		46	1	22	2	0.09			
RGS14	10636	mdanderson.org	37	5	176793307	176793307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_006480	exon3	c.T197C	p.L66P	GGGCCCTGTCCTT		49	3	0.06	59	0	0				28	0	0.00			
TTBK1	84630	mdanderson.org	37	6	43251731	43251731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_032538	exon14	c.C3253T	p.P1085S	GCTCGGCCGCAGC		33	3	0.09	36	0	0				2	0	0.00			
RUNX2	860	hgsc.bcm.edu	37	6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	RUNX2_ENST00000352853,NS,carcinoma,0,2	RUNX2_ENST00000352853	NM_001024630	exon3	c.C211G	p.Q71E	CAGCAGCAGGAGG		26	4	0.15	18	1	0.0555555556		0	2	1	0	0.00			
BAI3	577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	69723993	69723993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001704	exon12	c.C1993A	p.Q665K	GATGCACAACAGG		369	80	0.22	273	0	0				0	0				
COL9A1	1297	mdanderson.org	37	6	70978539	70978539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	COL9A1_ENST00000320755,NS,carcinoma,0,2	COL9A1_ENST00000320755	NM_001851	exon17	c.C1255A	p.R419S	CTGAGCGACCTGG		47	3	0.06	36	0	0		0	2	0	0				
SLC22A16	85413	ucsc.edu	37	6	110752416	110752416	+	Silent	SNP	C	C	T	rs142454497		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	SLC22A16	NM_033125	exon7	c.G1479A	p.P493P	AGAGAACGGCGCC		37	4	0.11	32	0	0		81		0	0				
SHPRH	257218	mdanderson.org	37	6	146248330	146248330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_173082	exon15	c.C3223A	p.L1075I	CTTGAAGTGAATC		47	3	0.06	29	0	0				11	0	0.00			
GTF2IRD2P1	0	broad.mit.edu	37	7	72663998	72663998	+	RNA	SNP	T	T	G	rs2539034	bycluster	TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	.	.	.	.	CCGGGGTCCTTGA		141	4	0.03	92	1	0.0108695652				0	0				
CDK14	5218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	90585027	90585027	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_012395	exon8	c.A788T	p.K263I	GAGCAAAATCCGT		99	11	0.11	59	0	0				6	0	0.00			
RBM48	84060	broad.mit.edu	37	7	92164020	92164021	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	TT	TT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_032120	exon4	c.753_754del	p.251_252del	AAACTCTTTGAAA		92	8	0.09	46	0	0				82	0	0.00			
LAMB4	22798	mdanderson.org	37	7	107717416	107717416	+	Missense_Mutation	SNP	G	G	T	rs144579218	alternate_allele	TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_007356	exon17	c.C2097A	p.H699Q	ATGAGCGTGGGAC		49	3	0.06	18	0	0				2	0	0.00			
KCP	375616	broad.mit.edu	37	7	128548305	128548308	+	RNA	DEL	AAGA	AAGA	-	rs139059512	by1000genomes;alternate_allele	TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	AAGA	AAGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	KCP	.	.	.	.	AGAAAGAAGAAAG		10	5	0.50	4	0	0		16		0	0				
C7orf29	113763	mdanderson.org	37	7	150027654	150027654	+	Missense_Mutation	SNP	G	G	A	rs371078860		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_138434	exon1	c.G161A	p.R54Q	TGGCCCGGCAGCT		50	3	0.06	40	0	0				29	0	0.00			
XKR9	389668	mdanderson.org	37	8	71646627	71646627	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001011720	exon5	c.G1090T	p.E364X	CTAAGAGAATGTA		49	3	0.06	29	0	0				3	0	0.00			
SCRIB	23513	mdanderson.org	37	8	144886905	144886905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_182706	exon21	c.C2842T	p.R948W	CCTCCCGCTCCAA		27	3	0.11	25	0	0				228	0	0.00			
EPPK1	83481	broad.mit.edu	37	8	144940690	144940690	+	Silent	SNP	G	G	A	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	EPPK1	NM_031308	exon1	c.C6732T	p.S2244S	GTAGATGCTCATC		58	4	0.07	41	1	0.0243902439		199		103	12	0.12			
OPLAH	26873	broad.mit.edu	37	8	145108284	145108284	+	Missense_Mutation	SNP	G	G	T	rs186909122	by1000genomes;alternate_allele	TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	OPLAH	NM_017570	exon20	c.C2699A	p.A900D	CGCAGGGCCTCCG		70	6	0.09	38	0	0		78		14	0	0.00			
JAK2	3717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5080316	5080316	+	Missense_Mutation	SNP	G	G	T	rs368219482	alternate_allele	TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_004972	exon17	c.G2219T	p.G740V	GTTTTGGTACCAC		151	32	0.21	145	0	0				8	4	0.50			
GAS1	2619	mdanderson.org	37	9	89560990	89560990	+	Silent	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_002048	exon1	c.C705A	p.V235V	CTCCTTGACCGAC		17	3	0.18	17	0	0				13	0	0.00			
LOC100132077	0	broad.mit.edu	37	9	97108463	97108464	+	RNA	INS	-	-	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	.	.	.	.	AACAATCTTTTTT		9	3	0.33	7	0	0				0	0				
C5	727	hgsc.bcm.edu;mdanderson.org	37	9	123751989	123751989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	.	NM_001735	exon24	c.C3011A	p.P1004H	CCTTTGGGGAGGT		79	4	0.05	53	0	0				4	0	0.00			
PDHA1	5160	broad.mit.edu	37	X	19369427	19369427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SB-A6J6-01A-11D-A435-10	TCGA-SB-A6J6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fdfd4ff8-15a9-45b4-b360-def8726d63f1	f490534e-6bd1-4887-89fb-1eb9c49c2ca5	.	PDHA1	NM_001173454	exon5	c.G434A	p.G145D	AGGCCGGCATCAA		429	6	0.01	265	0	0		85		171	0	0.00			
