Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
CYP4B1	1580	hgsc.bcm.edu	37	1	47276567	47276567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_000779	exon2	c.G268T	p.G90C	TTCATTGGCTTCC		61	4	0.07	60	0	0				0	0				
ORC1	4998	broad.mit.edu	37	1	52859133	52859133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	ORC1	NM_004153	exon6	c.C1064A	p.P355Q	TTTTCTGGTTTCA		171	5	0.03	188	0	0		79		74	0	0.00			
ACP6	51205	broad.mit.edu	37	1	147142085	147142085	+	Missense_Mutation	SNP	A	A	C	rs201678741		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	ACP6	NM_016361	exon1	c.T86G	p.V29G	AGGGCCACCCGCC		95	33	0.35	57	16	0.2807017544		36		35	5	0.14			
PRRC2C	23215	broad.mit.edu	37	1	171535453	171535453	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_015172	exon21	c.G6193T	p.E2065X	GGAAATGAAAATG		544	7	0.01	369	0	0				271	0	0.00			
METTL13	51603	broad.mit.edu	37	1	171759606	171759606	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	METTL13	NM_015935	exon5	c.1324delA	p.K442fs	AAGCGGAAAAAGG		543	9	0.02	342	0	0		67		132	0	0.00			
PLXNA2	5362	broad.mit.edu	37	1	208224629	208224629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	PLXNA2	NM_025179	exon16	c.C3133A	p.R1045S	CGATGCGCTGGAC		438	7	0.02	290	1	0.0034482759		178		199	0	0.00			
SLC29A3	55315	hgsc.bcm.edu	37	10	73121735	73121735	+	Silent	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_018344	exon6	c.G798T	p.A266A	TCTTGCGGCCCAT		118	3	0.03	77	0	0				45	0	0.00			
KAT6B	23522	mdanderson.org	37	10	76788681	76788681	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_012330	exon18	c.G4099T	p.E1367X	GAAGAAGAGGAAG		32	3	0.09	33	0	0				46	0	0.00			
ZFYVE27	118813	mdanderson.org	37	10	99504637	99504637	+	Silent	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001002261	exon3	c.G420T	p.L140L	TCGCCTGTCTCGT		46	3	0.07	20	0	0				41	0	0.00			
KRTAP5-5	439915	bcgsc.ca	37	11	1651127	1651127	+	Silent	SNP	C	C	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	KRTAP5-5	NM_001001480	exon1	c.C57T	p.S19S	TGGCTCCGGCTGT		105	7	0.07	95	0	0		86		0	0				
MRGPRE	116534	mdanderson.org	37	11	3249138	3249138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001039165	exon2	c.G892A	p.A298T	TGACGGCCCCCAG		17	2	0.12	27	0	0				0	0				
SAAL1	113174	mdanderson.org	37	11	18127494	18127494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_138421	exon1	c.G95A	p.S32N	TGTTTGCTGTAGA		46	3	0.07	44	0	0				48	0	0.00			
NAT10	55226	mdanderson.org	37	11	34153768	34153768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_024662	exon15	c.G1617T	p.K539N	CTACAAGGTAACT		76	4	0.05	91	0	0				86	0	0.00			
TMEM132A	54972	mdanderson.org	37	11	60698031	60698031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_017870	exon5	c.C916T	p.P306S	GCCCAGCCCACAC		39	3	0.08	47	0	0				96	0	0.00			
AP5B1	91056	broad.mit.edu	37	11	65545364	65545364	+	Missense_Mutation	SNP	G	G	T	rs375436485	alternate_allele	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	AP5B1	NM_138368	exon2	c.C2600A	p.A867E	TCCCCCGCCAGGG		58	3	0.05	61	0	0		40		11	0	0.00			
DLG2	1740	mdanderson.org	37	11	84028172	84028172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001206769	exon1	c.C17A	p.T6N	TGCTTGGTGAGGT		44	3	0.07	75	0	0				0	0				
OR6X1	390260	mdanderson.org	37	11	123624888	123624888	+	Silent	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001005188	exon1	c.C339A	p.L113L	GATAGTGAGGATC		79	4	0.05	87	0	0				0	0				
GXYLT1	283464	hgsc.bcm.edu	37	12	42481617	42481617	+	Missense_Mutation	SNP	G	G	C	rs75740340	bycluster	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	Q8IXV1_HUMAN,NS,carcinoma,+1,2	Q8IXV1_HUMAN	NM_173601	exon8	c.C1294G	p.R432G	CATAACGATCTCT		73	3	0.04	83	0	0	0.002	1	2	20	0	0.00			
KCNH3	23416	mdanderson.org	37	12	49943881	49943881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_012284	exon10	c.G1687T	p.D563Y	CTCCCTGACGAGC		33	3	0.09	19	0	0				16	0	0.00			
SPRYD4	283377	broad.mit.edu	37	12	56862911	56862911	+	Silent	SNP	A	A	G	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	SPRYD4	NM_207344	exon2	c.A174G	p.G58G	GGTGGGATTGGAG		63	10	0.16	60	13	0.2166666667		13		49	7	0.14			
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu	37	12	72023401	72023405	+	Frame_Shift_Del	DEL	TTTCA	TTTCA	-	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	TTTCA	TTTCA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	ZFC3H1	NM_144982	exon19	c.3811_3815del	p.1271_1272del	CTTTACTTTCATT		72	10	0.14	48	0	0		172		17	0	0.00			
CUX2	23316	mdanderson.org	37	12	111776097	111776097	+	Silent	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	CUX2,colon,carcinoma,+2,1	CUX2	NM_015267	exon20	c.G3204T	p.R1068R	GCAGCGGCTGTTT		37	3	0.08	19	0	0		2	1	23	0	0.00			
RNF10	9921	broad.mit.edu	37	12	121004666	121004666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	RNF10	NM_014868	exon13	c.T1924C	p.F642L	CAGCAGTTTCCTG		309	7	0.02	255	0	0		75		479	3	0.01			
PITPNM2	57605	ucsc.edu	37	12	123475099	123475099	+	Silent	SNP	G	G	A	rs376540906	alternate_allele	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	PITPNM2	NM_020845	exon16	c.C2562T	p.I854I	CTGGGCGATGCTG		41	4	0.10	31	0	0		105		19	0	0.00			
DDX55	57696	broad.mit.edu	37	12	124103201	124103202	+	Translation_Start_Site	DEL	TG	TG	-	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	DDX55	.	.	.	.	GTGGTATGTGTGT		95	9	0.09	63	0	0		51		22	0	0.00			
SFSWAP	6433	mdanderson.org	37	12	132241078	132241078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	SFSWAP,colon,carcinoma,-1,1	SFSWAP	NM_001261411	exon11	c.G1609T	p.G537W	GATGCTGGGGAGG		46	3	0.07	32	0	0		-1	1	89	0	0.00			
FLT1	2321	mdanderson.org	37	13	28883002	28883002	+	Missense_Mutation	SNP	G	G	T	rs115595062	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_002019	exon28	c.C3698A	p.P1233Q	GCATTCGGTAAAA		60	4	0.07	94	0	0				14	0	0.00			
RFC3	5983	mdanderson.org	37	13	34540232	34540232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	RFC3_ENST00000434425,NS,carcinoma,0,1	RFC3_ENST00000434425	NM_181558	exon9	c.G888T	p.K296N	ATGTAAGGAGGAA		46	3	0.07	33	0	0		0	1	4	0	0.00			
PCDH8	5100	mdanderson.org	37	13	53420855	53420855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_002590	exon1	c.C1717A	p.R573S	GTTGGCGCAGCGT		28	3	0.11	21	0	0				0	0				
DIAPH3	81624	mdanderson.org	37	13	60565332	60565332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001042517	exon12	c.C1321A	p.L441I	GCTGAAGAATAGA		40	3	0.08	35	0	0				15	0	0.00			
NKX2-1	7080	mdanderson.org	37	14	36988198	36988198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001079668	exon2	c.T455C	p.F152S	GCGGGGAAGCGCG		14	6	0.43	11	1	0.0909090909				0	0				
SYNE2	23224	mdanderson.org	37	14	64593514	64593514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	SYNE2,NS,carcinoma,-2,1	SYNE2	NM_015180	exon73	c.C13906A	p.R4636S	TACAACCGCAGTT		35	3	0.09	24	0	0		-2	1	30	0	0.00			
CCNK	8812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	99959052	99959052	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001099402	exon2	c.C38G	p.T13S	CAGTAACTTCAGC		139	23	0.17	143	0	0				131	26	0.20			
.	0	broad.mit.edu;mdanderson.org	37	14	107178963	107178963	+	RNA	SNP	T	T	G	rs374012300	alternate_allele	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	.	.	.	.	AATCAATGAGTGC		302	15	0.05	267	2	0.0074906367				63	1	0.02			
.	283685	bcgsc.ca	37	15	23685618	23685618	+	Silent	SNP	C	C	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	.	.	.	.	TGCTCCCACATCT		43	6	0.14	35	0	0				0	0				
.	388112	bcgsc.ca	37	15	35376761	35376761	+	RNA	SNP	C	C	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	.	.	.	.	AGGCATCCCTGGT		336	36	0.11	308	0	0				916	0	0.00			
CD276	80381	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	73995180	73995180	+	Silent	SNP	C	C	T	rs146911233	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001024736	exon4	c.C486T	p.T162T	GGTGACCATCACG		125	23	0.18	118	0	0				138	24	0.17			
LOC645752	0	broad.mit.edu	37	15	78217296	78217296	+	RNA	SNP	A	A	G	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	.	.	.	.	GTGGCAACCACCA		107	13	0.12	95	0	0				0	0				
PRR25	388199	mdanderson.org	37	16	863659	863659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001013638	exon3	c.G1007T	p.G336V	AGCCCGGGGAGGC		20	2	0.10	13	0	0				0	0				
TELO2	9894	mdanderson.org	37	16	1550145	1550145	+	Missense_Mutation	SNP	C	C	T	rs140327619		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_016111	exon7	c.C982T	p.R328W	AGCCAGCGGCGCC		33	3	0.09	36	0	0	0			70	0	0.00			
RRN3P2	0	broad.mit.edu	37	16	29096900	29096900	+	RNA	DEL	A	A	-	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	.	.	.	.	TTCTTTAAAAAAA		13	4	0.31	13	0	0				0	0				
RRN3P2	0	broad.mit.edu	37	16	29110438	29110438	+	RNA	SNP	T	T	C	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	.	.	.	.	AGTATCTTCAGAG		390	4	0.01	338	0	0				0	0				
RRN3P2	0	broad.mit.edu	37	16	29118702	29118704	+	RNA	DEL	AGC	AGC	-	rs374747642	alternate_allele	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	AGC	AGC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	.	.	.	.	GGTCCAAGCAGCA		38	7	0.18	19	0	0				1	0	0.00			
RFWD3	55159	broad.mit.edu	37	16	74660394	74660394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	RFWD3	NM_018124	exon12	c.C2028A	p.D676E	TCCAGTGTCATCC		163	5	0.03	137	0	0		49		199	0	0.00			
ASIC2	40	mdanderson.org	37	17	31618506	31618506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_183377	exon1	c.C628A	p.R210S	CCAGGCGGTCCAT		44	3	0.07	43	0	0				3	0	0.00			
KRT33B	3884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39525812	39525812	+	Missense_Mutation	SNP	T	T	C	rs199518913	bycluster;by1000genomes	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	KRT33B,NS,carcinoma,+1,3	KRT33B	NM_002279	exon1	c.A191G	p.N64S	CGGTCGTTCAGGA		166	44	0.27	161	0	0	0	1	3	0	0				
RGS9	8787	mdanderson.org	37	17	63221447	63221447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	RGS9,NS,carcinoma,0,1	RGS9	NM_003835	exon18	c.G1735T	p.A579S	CGCATGGCTCTGT		30	3	0.10	35	0	0		0	1	0	0				
LPIN2	9663	mdanderson.org	37	18	2931429	2931429	+	Silent	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_014646	exon9	c.C1281A	p.P427P	GGAACCGGGCTCC		33	3	0.09	21	0	0				35	0	0.00			
ARID3A	1820	mdanderson.org	37	19	932484	932484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_005224	exon3	c.G435T	p.E145D	GGAGGAGGATTAC		52	4	0.08	34	0	0				11	0	0.00			
REEP6	92840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1496326	1496326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_138393	exon4	c.G391T	p.G131W	TGGAACGGGGCTC		54	6	0.11	49	0	0				268	0	0.00			
AMH	268	hgsc.bcm.edu;broad.mit.edu	37	19	2249483	2249484	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	AA	AA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	AMH	NM_000479	exon1	c.151_152del	p.51_51del	GCCCACAAGAGCC		39	10	0.26	24	0	0		12		18	8	0.44			
YIPF2	78992	bcgsc.ca;mdanderson.org	37	19	11038590	11038590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	YIPF2	NM_024029	exon3	c.C77T	p.A26V	GTGGTGGCTGCAT		102	5	0.05	92	0	0		13		271	0	0.00			
RASAL3	64926	mdanderson.org	37	19	15574979	15574979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_022904	exon2	c.G191A	p.R64H	ATCGAGCGAGGGG		44	3	0.07	45	0	0				25	0	0.00			
COLGALT1	79709	mdanderson.org	37	19	17688822	17688822	+	Missense_Mutation	SNP	G	G	A	rs372215750		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_024656	exon9	c.G1190A	p.R397Q	GCTACCGGGACCC		44	3	0.07	60	0	0				207	0	0.00			
MYBPC2	4606	broad.mit.edu	37	19	50955169	50955169	+	Missense_Mutation	SNP	C	C	T	rs11879768	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	MYBPC2	NM_004533	exon16	c.C1658T	p.A553V	AGAATGCGATTGT		234	4	0.02	180	0	0		103		3	0	0.00			
KLK2	3817	bcgsc.ca	37	19	51376760	51376760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	KLK2	NM_001002231	exon1	c.T31C	p.S11P	GCCTTGTCTGTGG		54	4	0.07	52	0	0		66		0	0				
ROCK2	9475	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	11355177	11355178	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	ROCK2	NM_004850	exon16	c.1725_1726del	p.575_576del	AGTATCAGACTCT		144	31	0.22	134	0	0		224		15	0	0.00			
ARHGEF4	50649	mdanderson.org	37	2	131803741	131803741	+	Silent	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_015320	exon14	c.G2052T	p.R684R	CAGCCGGCTGGCA		46	3	0.07	50	0	0				28	0	0.00			
SCN7A	6332	broad.mit.edu	37	2	167301385	167301385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	SCN7A	NM_002976	exon12	c.C1513A	p.P505T	TAAATGGTGCCAT		185	4	0.02	169	0	0		410		0	0				
HECW2	57520	broad.mit.edu	37	2	197092904	197092904	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	HECW2	NM_020760	exon22	c.T3839G	p.L1280X	TCAAATAAGCCAT		251	6	0.02	208	0	0		239		10	0	0.00			
IKZF2	22807	broad.mit.edu	37	2	214012404	214012405	+	Frame_Shift_Del	DEL	AA	AA	-	rs112988286	bycluster	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	AA	AA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	IKZF2	.	.	.	.	ACACACAAAAAAA		55	9	0.16	46	0	0		71		0	0				
NSFL1C	55968	mdanderson.org	37	20	1447419	1447419	+	Silent	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_016143	exon1	c.C51A	p.G17G	CTCGGCGCCCGTC		31	3	0.10	30	0	0				190	2	0.01			
SNRPB2	6629	bcgsc.ca;mdanderson.org	37	20	16721614	16721614	+	Silent	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	SNRPB2,NS,carcinoma,0,1	SNRPB2	NM_003092	exon7	c.G642T	p.P214P	CACACCGTCCCAT		92	5	0.05	72	0	0		12	1	454	0	0.00			
GMEB2	26205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62221817	62221817	+	Silent	SNP	C	C	T	rs368204390		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_012384	exon10	c.G1218A	p.P406P	GGTGGACGGCAGG		108	23	0.21	84	0	0				43	17	0.40			
NPBWR2	2832	mdanderson.org	37	20	62738008	62738008	+	Silent	SNP	C	C	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_005286	exon1	c.G177A	p.G59G	AGTCAGCCCCACA		44	3	0.07	51	0	0				2	0	0.00			
EVA1C	59271	mdanderson.org	37	21	33840041	33840041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_058187	exon4	c.G519T	p.E173D	CCAGGAGCTGAAA		39	3	0.08	33	0	0				9	0	0.00			
MED15	51586	mdanderson.org	37	22	20937421	20937421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001003891	exon12	c.G1559T	p.S520I	TCATGAGCCCAGC		50	3	0.06	53	0	0				405	1	0.00			
MYH9	4627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36716924	36716924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	MYH9,NS,malignant_melanoma,0,1	MYH9	NM_002473	exon8	c.C787T	p.R263C	TAGCACGAGATTT		76	12	0.16	65	0	0		0	1	366	41	0.11			
MGAT3	4248	broad.mit.edu	37	22	39884889	39884889	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	MGAT3	NM_002409	exon2	c.T1537G	p.W513G	GGCGGGTGGCGCC		58	13	0.22	66	16	0.2424242424		65		127	12	0.09			
GTDC2	84892	hgsc.bcm.edu	37	3	43121453	43121453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_032806	exon2	c.C1471A	p.Q491K	ACGCCTGGCACCG		84	4	0.05	68	0	0				57	0	0.00			
GOLGB1	2804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121448824	121448824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_004487	exon3	c.C137T	p.T46I	TCTTGTGTAGTAT		100	22	0.22	61	0	0				11	5	0.45			
SPATA16	83893	broad.mit.edu	37	3	172643226	172643226	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	SPATA16	NM_031955	exon7	c.1138delC	p.Q380fs	ATTGTTGGGGAGG		296	8	0.03	271	0	0		111		0	0				
SDHAP2	0	broad.mit.edu	37	3	195412514	195412515	+	RNA	INS	-	-	C	rs112711528		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	.	.	.	.	TTACAGTCCCCTG		12	4	0.33	7	1	0.1428571429				48	0	0.00			
MUC4	4585	mdanderson.org	37	3	195510622	195510622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_018406	exon2	c.C7829A	p.P2610H	GTGACAGGAAGAG		32	3	0.09	17	0	0				7	0	0.00			
MUC4	4585	broad.mit.edu	37	3	195516898	195516898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	MUC4	NM_018406	exon2	c.C1553A	p.T518K	TTTCCTGTGACAA		174	5	0.03	137	0	0		1505		10	0	0.00			
PIGX	54965	mdanderson.org	37	3	196443744	196443744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_017861	exon2	c.G128T	p.C43F	CCATGTGTTCTGA		97	5	0.05	87	0	0				15	0	0.00			
IDUA	3425	broad.mit.edu	37	4	996204	996204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	IDUA	NM_000203	exon8	c.A1120C	p.T374P	AACAACACCCGCC		113	39	0.35	90	29	0.3222222222		33		4	0	0.00			
POLN	353497	hgsc.bcm.edu	37	4	2077181	2077181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_181808	exon22	c.C2453A	p.A818E	CTACCTGCACACT		80	4	0.05	80	0	0				0	0				
HTT	3064	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3237461	3237461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	HTT,NS,carcinoma,0,1	HTT	NM_002111	exon63	c.G8741T	p.R2914L	CGCACCGGGCCAT		22	4	0.18	39	0	0		221	1	111	0	0.00			
RASGEF1B	153020	mdanderson.org	37	4	82368726	82368726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_152545	exon6	c.C661A	p.L221I	AATTGAGCCTCTC		48	3	0.06	74	0	0				5	0	0.00			
SEC31A	22872	mdanderson.org	37	4	83763615	83763615	+	Silent	SNP	C	C	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_001077207	exon22	c.G2646A	p.P882P	GGGATACGGCTGG		50	3	0.06	68	0	0				287	0	0.00			
UFSP2	55325	broad.mit.edu;mdanderson.org	37	4	186324768	186324768	+	Silent	SNP	T	T	C	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	UFSP2,bladder,carcinoma,-2,1	UFSP2	NM_018359	exon11	c.A1203G	p.G401G	AACTCCTCCCCCT		82	4	0.05	93	0	0		33	1	97	0	0.00			
AGXT2	64902	mdanderson.org	37	5	35035382	35035382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_031900	exon5	c.C526A	p.L176M	TGGCCAGCTCATT		31	3	0.10	35	0	0				0	0				
CUL9	23113	mdanderson.org	37	6	43166534	43166534	+	Silent	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_015089	exon12	c.G2991T	p.L997L	CCTCCTGTTGCTG		37	3	0.08	38	0	0				18	0	0.00			
KCNQ5	56479	broad.mit.edu	37	6	73331984	73331986	+	In_Frame_Del	DEL	GCG	GCG	-	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	GCG	GCG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	KCNQ5	NM_001160132	exon1	c.67_69del	p.23_23del	GGCGCAGCGGCGG		7	3	0.43	4	0	0		153		0	0				
MRAP2	112609	mdanderson.org	37	6	84765083	84765083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_138409	exon2	c.G46T	p.A16S	CAATCGGCATCTA		52	3	0.06	59	0	0				7	0	0.00			
CDK13	8621	mdanderson.org	37	7	39991320	39991320	+	Silent	SNP	C	C	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_003718	exon1	c.C1080T	p.S360S	CCCGAGCCCCTAC		13	2	0.15	9	0	0				44	0	0.00			
ZNF733P	0	broad.mit.edu	37	7	62759066	62759067	+	RNA	INS	-	-	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	.	.	.	.	TTTCTTCTTTTTT		10	3	0.30	13	0	0				0	0				
RABGEF1	27342	ucsc.edu	37	7	66270306	66270306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	RABGEF1	NM_014504	exon8	c.A1000G	p.N334D	CAGTCTAATATCC		125	1	0.01	73	0	0		56		102	12	0.12			
ZNF789	285989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99084226	99084227	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	GT	GT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	ZNF789	NM_213603	exon5	c.392_393del	p.131_131del	ACATAAGTGTAAA		189	27	0.14	191	0	0		33		40	0	0.00			
FAM185A	222234	broad.mit.edu	37	7	102401776	102401776	+	Silent	SNP	T	T	G	rs2537454		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	FAM185A	NM_001145268	exon4	c.T711G	p.G237G	AGATGGTTTGCTG		414	4	0.01	395	1	0.0025316456		10		14	0	0.00			
DPY19L2P2	349152	hgsc.bcm.edu	37	7	102825785	102825785	+	RNA	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	.	.	.	.	GTGTGTGTGTGTG		88	10	0.11	57	0	0				3	0	0.00			
ZNF777	27153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149153033	149153033	+	Silent	SNP	G	G	A	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_015694	exon2	c.C81T	p.L27L	TCGGGGGAGTCCA		112	23	0.21	98	0	0				49	19	0.39			
CHPF2	54480	mdanderson.org	37	7	150932588	150932588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_019015	exon2	c.C718T	p.R240W	CGTCTGCGGCCAC		28	3	0.11	33	0	0				46	0	0.00			
ASH2L	9070	mdanderson.org	37	8	37963102	37963102	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_004674	exon1	c.G34T	p.A12S	CAGGAAGCGGGTG		42	3	0.07	32	0	0				78	0	0.00			
SLC20A2	6575	broad.mit.edu	37	8	42329669	42329669	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	SLC20A2	NM_001257181	exon2	c.C240A	p.Y80X	CTCGTTGTACAGG		328	7	0.02	301	0	0		64		36	0	0.00			
PUF60	22827	broad.mit.edu	37	8	144899807	144899807	+	Silent	SNP	G	G	T	rs202135558	bycluster;by1000genomes;alternate_allele	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	PUF60	NM_078480	exon9	c.C963A	p.A321A	AGCAGCGGCAGGT		69	3	0.04	60	0	0		26		623	0	0.00			
SLC44A1	23446	broad.mit.edu	37	9	108118213	108118214	+	Translation_Start_Site	DEL	TG	TG	-	rs149701367	bycluster;by1000genomes;alternate_allele	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	SLC44A1	.	.	.	.	TGTGTATGTGTGT		6	2	0.33	4	0	0		61		0	0				
LAMC3	10319	mdanderson.org	37	9	133951288	133951288	+	Missense_Mutation	SNP	G	G	T	rs375541717	alternate_allele	TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_006059	exon21	c.G3565T	p.A1189S	AGCTACGCGCTTC		57	3	0.05	42	0	0				101	0	0.00			
LAMC3	10319	mdanderson.org	37	9	133952608	133952608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_006059	exon22	c.A3664G	p.R1222G	GCACTGAGGACGG		49	3	0.06	50	0	0				91	0	0.00			
ABCA2	20	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	9	139907669	139907669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_212533	exon30	c.G4742A	p.G1581D	AGCGAGCCGTTGG		34	6	0.18	40	0	0				22	5	0.23			
DPP7	29952	broad.mit.edu	37	9	140006326	140006326	+	Splice_Site	SNP	A	A	C	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	DPP7	NM_013379	exon10	c.T1206G	p.G402G	CTTACCACCCCCC		75	14	0.19	67	8	0.1194029851		22		154	6	0.04			
HSD17B10	3028	mdanderson.org	37	X	53459354	53459354	+	Silent	SNP	G	G	T	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	.	NM_004493	exon3	c.C198A	p.T66T	CTCAGAGGTCACC		35	4	0.11	20	0	0				761	0	0.00			
SPIN2A	54466	broad.mit.edu	37	X	57162583	57162583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SN-A6IS-01A-11D-A435-10	TCGA-SN-A6IS-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ca87b2ae-6a7b-45a2-af22-eaee181811e4	80864d22-97cf-4c45-89b2-fea8dc595170	.	SPIN2A	NM_019003	exon2	c.A448G	p.M150V	AGACCATCCCCCT		443	5	0.01	351	1	0.0028490028		7		0	0				
