Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
TMEM51-AS1	200197	hgsc.bcm.edu	37	1	15439098	15439098	+	RNA	SNP	C	C	T	rs114844404	bycluster	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	.	.	.	.	TTTTCTCCTCCCG		93	24	0.26	81	0	0				2	0	0.00			
LOC100129620	0	broad.mit.edu	37	1	99474093	99474094	+	RNA	INS	-	-	A	rs57656522	bycluster	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	.	.	.	.	AGCAACTAAAAAA		8	4	0.50	6	0	0				1	0	0.00			
SEC22B	9554	broad.mit.edu	37	1	145109259	145109260	+	RNA	INS	-	-	A	rs11386827	bycluster;by1000genomes	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	.	.	.	.	CCAGCCCGGGGGC		7	3	0.43	5	0	0				1	0	0.00			
FLG	2312	broad.mit.edu;mdanderson.org	37	1	152276832	152276832	+	Silent	SNP	G	G	C	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	FLG	NM_002016	exon3	c.C10530G	p.S3510S	CTGAGTGGAAGCT		86	4	0.05	82	0	0		900		102	0	0.00			
FLG	2312	ucsc.edu	37	1	152281562	152281562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	FLG,NS,carcinoma,+2,1	FLG	NM_002016	exon3	c.T5800C	p.W1934R	CAGACCACCTCTC		202	1	0.00	155	1	0.0064516129		900	1	28	24	0.86			
MUC1	4582	broad.mit.edu	37	1	155161799	155161799	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	MUC1	NM_001204286	exon2	c.A361C	p.T121P	GCGGGGTGGTGGA		47	11	0.23	27	7	0.2592592593		94		8	0	0.00			
NR1I3	9970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161200952	161200952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001077478	exon7	c.G778A	p.E260K	CAGGCTCTTGGAG		146	36	0.25	107	0	0				0	0				
RBM17	84991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	6157491	6157491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	RBM17,NS,carcinoma,0,1	RBM17	NM_001145547	exon12	c.G1178A	p.R393K	AATTCAGGGTCTT		50	10	0.20	45	0	0		0	1	384	189	0.49			
DCLRE1C	64421	mdanderson.org	37	10	14951005	14951005	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001033855	exon14	c.A1481G	p.K494R	TTTCTTTTAAAGA		50	3	0.06	53	0	0				5	0	0.00			
DEAF1	10522	mdanderson.org	37	11	674705	674705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_021008	exon10	c.T1334C	p.L445P	AGCTCCAGCCCAT		38	3	0.08	56	0	0				164	0	0.00			
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1261503	1261503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	MUC5B,NS,carcinoma,0,2	MUC5B	NM_002458	exon30	c.G3868A	p.G1290R	ATCTGCGGAAGCA		66	18	0.27	59	0	0		0	2	0	0				
AMBRA1	55626	mdanderson.org	37	11	46563785	46563785	+	Silent	SNP	G	G	T	rs375558035	alternate_allele	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_017749	exon8	c.C1512A	p.G504G	AGCCTCGCCAGAG		36	3	0.08	47	0	0				6	0	0.00			
TCN1	6947	mdanderson.org	37	11	59633919	59633919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001062	exon1	c.C25A	p.L9I	CCACTAGGGGCAG		47	3	0.06	52	0	0				26	0	0.00			
ASRGL1	80150	mdanderson.org	37	11	62156700	62156700	+	Missense_Mutation	SNP	G	G	T	rs144391767	alternate_allele	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001083926	exon5	c.G587T	p.R196L	TCGGCCGCGTTGG		33	3	0.09	23	0	0				51	0	0.00			
TSGA10IP	254187	broad.mit.edu	37	11	65715748	65715751	+	RNA	DEL	CATC	CATC	-	rs372880030		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	CATC	CATC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	TSGA10IP	.	.	.	.	TTGGATCATCCAT		6	2	0.33	16	0	0		31		0	0				
LRP5	4041	mdanderson.org	37	11	68115709	68115709	+	Silent	SNP	C	C	T	rs191882942	bycluster;by1000genomes	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_002335	exon2	c.C486T	p.H162H	CGCTCACGGGTAA		11	2	0.18	16	0	0	0.001			16	0	0.00			
RHNO1	83695	broad.mit.edu	37	12	2997087	2997087	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001257098	exon3	c.A179T	p.D60V	CACCTGATTTTGA		149	15	0.10	82	6	0.0731707317				116	0	0.00			
NACA	4666	broad.mit.edu	37	12	57112396	57112396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	NACA	.	.	.	.	CCTTTTGGGGAGG		57	7	0.12	34	0	0		131		0	0				
TMCC3	57458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	94976045	94976045	+	Silent	SNP	C	C	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_020698	exon2	c.G348A	p.E116E	CTTCTTCTCAAAG		114	21	0.18	67	0	0				2	0	0.00			
SLC5A8	160728	mdanderson.org	37	12	101603481	101603481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_145913	exon1	c.G146A	p.G49D	CTGCGGCCGCCCA		33	3	0.09	39	0	0				0	0				
ATP12A	479	mdanderson.org	37	13	25283966	25283966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001185085	exon19	c.G2781T	p.W927C	GGAATGGGTGAGT		38	3	0.08	31	0	0				286	0	0.00			
.	100288130	bcgsc.ca	37	13	71498254	71498254	+	RNA	SNP	C	C	G	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	.	.	.	.	GTCGGTCTTACTC		46	21	0.46	45	0	0				0	0				
ZBTB1	22890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64989758	64989758	+	Silent	SNP	G	G	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_014950	exon2	c.G1536A	p.R512R	TTTTAGGGACAAT		68	25	0.37	67	0	0				21	8	0.38			
GPR68	0	broad.mit.edu	37	14	91701361	91701363	+	In_Frame_Del	DEL	TCA	TCA	-	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	TCA	TCA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	GPR68	NM_001177676	exon2	c.32_34del	p.11_12del	TACAGCTCATCGA		100	9	0.09	75	0	0		32		9	0	0.00			
SLC25A47	283600	mdanderson.org	37	14	100789780	100789780	+	Splice_Site	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_207117	exon1	c.28+1G>T	.	TCGGAGGTAACAG		35	3	0.09	37	0	0				0	0				
HERC2	8924	broad.mit.edu	37	15	28459392	28459392	+	Missense_Mutation	SNP	G	G	A	rs138059246	bycluster;byfrequency	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	HERC2,NS,carcinoma,0,1	HERC2	NM_004667	exon41	c.C6385T	p.R2129C	GCGGGCGCACCCT		40	5	0.13	49	0	0		501	1	1	0	0.00			
RYR3	6263	mdanderson.org	37	15	34145883	34145883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	RYR3,NS,carcinoma,+1,1	RYR3	NM_001036	exon96	c.G13799T	p.W4600L	TGTCATGGTACAA		48	3	0.06	48	0	0		1	1	0	0				
CASC5	57082	mdanderson.org	37	15	40911197	40911197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_170589	exon10	c.G441T	p.M147I	CCAGATGCAACAG		32	3	0.09	44	0	0				0	0				
HEXA	3073	mdanderson.org	37	15	72643501	72643501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_000520	exon6	c.C645A	p.S215R	AGTGAAGCTCTCA		45	3	0.07	59	0	0				108	0	0.00			
PML	5371	mdanderson.org	37	15	74315527	74315527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_033249	exon3	c.G961T	p.A321S	CTGGATGCTGTGC		20	2	0.10	26	0	0				21	0	0.00			
WDR24	84219	mdanderson.org	37	16	735454	735454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_032259	exon7	c.G1822A	p.A608T	CGGGGGCCAGGGA		41	3	0.07	55	0	0				52	0	0.00			
ARHGAP17	55114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24965936	24965936	+	Silent	SNP	G	G	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001006634	exon10	c.C840T	p.G280G	CTTCATGCCTGTC		32	12	0.38	38	0	0				14	0	0.00			
RRN3P2	0	broad.mit.edu	37	16	29102416	29102416	+	RNA	DEL	A	A	-	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	.	.	.	.	AAAAATAAAAAAA		7	2	0.29	5	0	0				0	0				
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31371099	31371099	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_000887	exon6	c.T509A	p.M170K	CCACGATGATGAA		65	18	0.28	67	0	0				0	0				
EDC4	23644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67911669	67911669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_014329	exon7	c.T815C	p.L272P	ACATGCTCCGCTC		163	33	0.20	110	0	0				12	4	0.33			
VPS4A	27183	mdanderson.org	37	16	69352745	69352745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_013245	exon5	c.G363T	p.K121N	GGAGAAGCCCAAC		38	3	0.08	32	0	0				149	0	0.00			
COG8	84342	mdanderson.org	37	16	69369198	69369198	+	Silent	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_032382	exon3	c.C639A	p.I213I	TTGCTGGATCAGC		17	2	0.12	19	0	0				32	0	0.00			
DHODH	1723	mdanderson.org	37	16	72057134	72057134	+	Missense_Mutation	SNP	G	G	T	rs200181357	bycluster;alternate_allele	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	DHODH,NS,carcinoma,+1,1	DHODH	NM_001361	exon7	c.G890T	p.R297L	CCCTGCGCTCTGA		35	3	0.09	82	0	0		1	1	21	0	0.00			
DNAH2	146754	mdanderson.org	37	17	7689596	7689596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_020877	exon39	c.G6284A	p.R2095H	CATGGCGCATTCT		43	3	0.07	47	0	0				0	0				
ITGA2B	3674	broad.mit.edu	37	17	42460925	42460925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	ITGA2B	NM_000419	exon12	c.G1146T	p.Q382H	ATAGAGCTGTGTG		62	6	0.10	52	1	0.0192307692		88		6	0	0.00			
NFE2L1	4779	bcgsc.ca;mdanderson.org	37	17	46136684	46136684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	NFE2L1	NM_003204	exon6	c.C2000T	p.A667V	AGATGGCGGCGCA		74	5	0.07	76	0	0		60		398	0	0.00			
GIP	2695	broad.mit.edu	37	17	47039146	47039146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	GIP	NM_004123	exon4	c.C293A	p.A98E	TCCAGCGCCCGAG		60	4	0.07	49	0	0		15		434	0	0.00			
TANC2	26115	mdanderson.org	37	17	61489048	61489048	+	Splice_Site	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_025185	exon20	c.3543+1G>T	.	GAGGTGGTAAGTA		48	3	0.06	36	0	0				0	0				
ARSG	22901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66339927	66339927	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001267727	exon3	c.T401G	p.I134R	CTGGGATAATAGG		89	18	0.20	57	0	0				3	0	0.00			
UNC13D	201294	mdanderson.org	37	17	73840402	73840402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_199242	exon1	c.C17A	p.S6Y	GGATGGGAGAGGA		41	3	0.07	58	0	0				5	0	0.00			
SMARCA4	6597	hgsc.bcm.edu	37	19	11144829	11144829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_003072	exon28	c.G3904T	p.V1302F	GAGACCGTCAACC		84	4	0.05	79	0	0				487	0	0.00			
ILVBL	10994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15233609	15233609	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_006844	exon6	c.T611G	p.V204G	ACAAACACCGGAC		87	26	0.30	86	0	0				121	42	0.35			
ANO8	57719	mdanderson.org	37	19	17439209	17439209	+	Missense_Mutation	SNP	G	G	T	rs202118586		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_020959	exon13	c.C1988A	p.A663E	CCCTCCGCCTCGT		23	2	0.09	25	0	0				6	0	0.00			
.	0	broad.mit.edu	37	19	20317771	20317772	+	RNA	INS	-	-	AC	rs199677845	alternate_allele	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	.	.	.	.	TCCTGAAACACAC		13	4	0.31	5	0	0				0	0				
MEGF8	1954	mdanderson.org	37	19	42872801	42872801	+	Silent	SNP	C	C	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001271938	exon36	c.C6468T	p.S2156S	ACTCAGCGGCCCC		38	3	0.08	28	0	0				0	0				
C2orf16	84226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27804669	27804669	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_032266	exon1	c.A5230T	p.S1744C	CATCACAGTCCCT		98	31	0.32	73	0	0				0	0				
C2orf81	388963	broad.mit.edu	37	2	74642300	74642300	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	C2orf81	NM_001145054	exon4	c.A923C	p.Y308S	GAGGGGTAGGACA		137	43	0.31	90	21	0.2333333333		23		5	0	0.00			
RGPD4	285190	ucsc.edu	37	2	108487826	108487826	+	Silent	SNP	C	C	T	rs62150212	byfrequency;by1000genomes	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	RGPD4	NM_182588	exon20	c.C3366T	p.P1122P	GAAGCCCCTGTCT		13	4	0.31	15	2	0.1333333333		112		0	0				
RGPD4	285190	ucsc.edu	37	2	108487829	108487829	+	Silent	SNP	G	G	C	rs7589903	bycluster	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	RGPD4	NM_182588	exon20	c.G3369C	p.L1123L	GCCCCTGTCTGGA		13	4	0.31	16	2	0.125		112		0	0				
CSRNP3	80034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166514444	166514444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	CSRNP3,NS,carcinoma,0,1	CSRNP3	NM_001172173	exon5	c.G322A	p.E108K	CTTGGCGAGTTTG		168	65	0.39	154	0	0		0	1	0	0				
FAM117B	150864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	203591019	203591019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_173511	exon4	c.G893A	p.R298Q	GCAGTCGGCATCA		232	96	0.41	242	0	0				1	1	1.00			
VIL1	7429	mdanderson.org	37	2	219301338	219301338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_007127	exon16	c.G1960T	p.V654F	CTAGATGTCTGGG		89	5	0.06	64	0	0				1	0	0.00			
COL4A4	1286	mdanderson.org	37	2	227983443	227983443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_000092	exon7	c.C407A	p.P136H	ATACCAGGTTTGC		21	2	0.10	26	0	0				1	0	0.00			
C20orf27	54976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3739195	3739195	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001039140	exon3	c.C225G	p.S75R	CAGAAAGCTGCTG		61	15	0.25	35	0	0				180	59	0.33			
GDF5	8200	broad.mit.edu	37	20	34025551	34025551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	GDF5	NM_000557	exon1	c.T158C	p.L53P	CGGGCCAGGGGGG		36	8	0.22	42	7	0.1666666667		66		0	0				
ANKRD30BP2	0	broad.mit.edu	37	21	14410884	14410885	+	RNA	INS	-	-	C	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	.	.	.	.	GTCCTGGCCCCGA		6	3	0.50	6	0	0				0	0				
KRTAP10-4	386672	ucsc.edu	37	21	45993851	45993851	+	Silent	SNP	C	C	T	rs543299		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	KRTAP10-4	NM_198687	exon1	c.C216T	p.C72C	GACCTGCGAGCCC		35	12	0.34	18	7	0.3888888889		44		0	0				
CCR9	10803	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45942703	45942703	+	Silent	SNP	C	C	T	rs201764174		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	CCR9	NM_031200	exon3	c.C423T	p.S141S	CATCAGCGTGGAC		121	19	0.16	68	1	0.0147058824		45		0	0				
HEG1	57493	mdanderson.org	37	3	124716650	124716650	+	Silent	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_020733	exon12	c.C3535A	p.R1179R	TCTTCCGCTTGCA		34	4	0.12	46	0	0				1	0	0.00			
PIK3CB	5291	mdanderson.org	37	3	138374260	138374260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_006219	exon22	c.C3184A	p.H1062N	CTGTGTGGGCCAT		116	5	0.04	123	0	0				24	0	0.00			
PDS5A	23244	broad.mit.edu;mdanderson.org	37	4	39864513	39864513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	PDS5A	NM_001100399	exon25	c.A2947G	p.I983V	GCTTAATGTATTC		53	4	0.08	50	0	0		114		6	0	0.00			
ADAMTS3	9508	mdanderson.org	37	4	73161498	73161498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_014243	exon19	c.C2596A	p.Q866K	TGTACTGGAAACC		52	3	0.06	57	0	0				0	0				
CLPTM1L	81037	mdanderson.org	37	5	1331993	1331993	+	Silent	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_030782	exon8	c.C897A	p.L299L	ATCAAAGAGAAGC		24	3	0.13	29	0	0				179	0	0.00			
MAP1B	4131	mdanderson.org	37	5	71495134	71495134	+	Silent	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_005909	exon5	c.G5952T	p.L1984L	GCTTCTGGATGAC		29	3	0.10	28	0	0				0	0				
SERINC5	256987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79465352	79465352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001174071	exon6	c.G569A	p.S190N	TTGTTACTGGCTG		68	24	0.35	83	0	0				7	5	0.71			
ANKRD34B	340120	mdanderson.org	37	5	79855372	79855372	+	Nonsense_Mutation	SNP	A	A	T	rs32857	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001004441	exon5	c.T467A	p.L156X	CAGGGCAACTTTG		111	5	0.05	92	0	0				0	0				
ACSL6	23305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131310650	131310650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001009185	exon11	c.C1004T	p.P335L	TGTCTCGGAAAGA		192	60	0.31	230	0	0				1	0	0.00			
PCDHB14	56122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140604522	140604522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_018934	exon1	c.C1445A	p.T482N	CAGGCACCAACGC		54	11	0.20	29	0	0				7	5	0.71			
TAF7	6879	mdanderson.org	37	5	140699046	140699046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_005642	exon1	c.C566A	p.T189K	TCCTTTGTTTCAT		61	4	0.07	76	0	0				310	0	0.00			
MAPK9	5601	mdanderson.org	37	5	179663447	179663447	+	Silent	SNP	C	C	T	rs114045781	bycluster;byfrequency;by1000genomes	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_139070	exon12	c.G1212A	p.T404T	GGCCAGCGTCTGC		46	3	0.07	54	0	0	0.001			55	1	0.02			
PBX2	5089	mdanderson.org	37	6	32157666	32157666	+	Silent	SNP	G	G	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_002586	exon1	c.C27T	p.P9P	TGGAGGGGGCGGC		60	5	0.08	39	1	0.0256410256				2	0	0.00			
KLC4	89953	bcgsc.ca;mdanderson.org	37	6	43041047	43041047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	KLC4	NM_201523	exon14	c.G1770T	p.K590N	GAGGAAGCTCCAG		58	5	0.09	66	0	0		89		88	0	0.00			
C6orf58	352999	mdanderson.org	37	6	127898393	127898393	+	Silent	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001010905	exon1	c.G63T	p.G21G	AGCAGGGACTTCC		47	4	0.09	50	0	0				0	0				
LPA	4018	hgsc.bcm.edu	37	6	160978593	160978593	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_005577	exon30	c.G4642T	p.E1548X	AGTTCTCGGTCAG		89	4	0.04	73	0	0				1	0	0.00			
SP8	221833	broad.mit.edu;mdanderson.org	37	7	20824970	20824970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	SP8	NM_182700	exon2	c.G466A	p.G156S	CGCCGCCGCTGCC		36	3	0.08	46	0	0		43		0	0				
GTF2IRD1	9569	mdanderson.org	37	7	73938405	73938405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_001199207	exon8	c.G1107T	p.K369N	AGAGAAGTGGGAC		40	3	0.08	47	0	0				41	0	0.00			
FAM200A	221786	mdanderson.org	37	7	99144733	99144733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_145111	exon2	c.C1298A	p.T433N	TTAAAAGTTTGAG		27	3	0.11	43	0	0				16	0	0.00			
MLL5	55904	mdanderson.org	37	7	104746451	104746451	+	Splice_Site	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_018682	exon18	c.2596+1G>T	.	TTCCAGGTAGAAT		81	4	0.05	99	0	0				2	0	0.00			
FAM86B1	85002	broad.mit.edu	37	8	12042851	12042851	+	Missense_Mutation	SNP	C	C	G	rs200915866	byfrequency	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	FAM86B1	.	.	.	.	CTCGGGCACCATG		13	5	0.38	9	0	0		7		3	0	0.00			
ADAM9	8754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38871495	38871495	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_003816	exon4	c.C266G	p.P89R	TTTTGCCTGAAGA		90	15	0.17	60	0	0				8	1	0.13			
SBF1P1	100133234	hgsc.bcm.edu;ucsc.edu	37	8	56362215	56362215	+	RNA	SNP	C	C	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	.	.	.	.	TGGTGGCCATGCC		97	14	0.14	48	0	0				1	0	0.00			
NSMAF	8439	mdanderson.org	37	8	59571855	59571855	+	Silent	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	NSMAF_ENST00000427130,NS,carcinoma,-1,2	NSMAF_ENST00000427130	NM_001144772	exon1	c.C51A	p.I17I	CTGCCGGATAGCT		32	3	0.09	12	0	0		-1	2	2	0	0.00			
LRRCC1	85444	broad.mit.edu	37	8	86019547	86019547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	LRRCC1,colon,carcinoma,0,2	LRRCC1	NM_033402	exon1	c.C17T	p.A6V	CGGCGGCGGTGGT		123	6	0.05	95	0	0		212	2	1	0	0.00			
SLC52A2	79581	mdanderson.org	37	8	145584287	145584287	+	Missense_Mutation	SNP	G	G	T	rs145502954	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_024531	exon4	c.G1039T	p.V347L	CTGGGCGTGTTCT		18	2	0.11	19	0	0				326	0	0.00			
INSL6	11172	mdanderson.org	37	9	5185598	5185598	+	Missense_Mutation	SNP	G	G	T	rs142813719	bycluster;byfrequency;alternate_allele	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	INSL6,NS,carcinoma,+1,1	INSL6	NM_007179	exon1	c.C5A	p.P2Q	AGCCGCGGCATCC		46	3	0.07	38	1	0.0263157895		1	1	0	0				
NFX1	4799	bcgsc.ca;mdanderson.org	37	9	33307243	33307243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	NFX1	NM_147134	exon5	c.G1322T	p.G441V	GCTGTGGTGAGGT		89	5	0.06	75	0	0		85		10	0	0.00			
GNAQ	2776	ucsc.edu;mdanderson.org	37	9	80537095	80537095	+	Nonsense_Mutation	SNP	G	G	T	rs200106152	by1000genomes	TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	GNAQ	NM_002072	exon2	c.C303A	p.Y101X	ATACTTGTATGGG		48	5	0.10	59	1	0.0169491525		384		2	0	0.00			
GAS1	2619	mdanderson.org	37	9	89561083	89561083	+	Silent	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_002048	exon1	c.C612A	p.R204R	GACGGTGCGGCAT		30	3	0.10	30	0	0				11	0	0.00			
SARDH	1757	ucsc.edu;bcgsc.ca	37	9	136594903	136594903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	SARDH,NS,carcinoma,-1,1	SARDH	NM_007101	exon6	c.G899A	p.R300H	TCGATGCGCTCGG		20	4	0.20	29	0	0		112	1	4	0	0.00			
ZNF41	7592	mdanderson.org	37	X	47308136	47308136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_007130	exon5	c.C1033A	p.H345N	TTTGATGTGTAAT		42	3	0.07	20	0	0				1	0	0.00			
HCFC1	3054	mdanderson.org	37	X	153217373	153217373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	NM_005334	exon20	c.G5179A	p.A1727T	CAATGGCTGGGTC		39	3	0.08	28	0	0				41	0	0.00			
SYNM	23336	hgsc.bcm.edu;mdanderson.org	37	15	99666940	99666940	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84X-01A-11D-A435-10	TCGA-SN-A84X-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	7d0b2beb-3dce-4db2-a954-9c296657443b	31d3449d-0532-4ab1-95ab-131b0431c63e	.	.	.	.	.	.	TTGGAAGGAGAAA		68	5	0.07	85	0	0				0	0				
