Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
SPEN	23013	mdanderson.org	37	1	16265332	16265332	+	Silent	SNP	G	G	T	rs138107503	alternate_allele	TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_015001	exon14	c.G10824T	p.A3608A	GCAGGCGGCAGGG		36	3	0.08	73	0	0				56	0	0.00			
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	21133864	21133864	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001198801	exon35	c.C4814G	p.T1605R	AATGCCGTGACAG		272	36	0.13	273	0	0				110	21	0.19			
WASF2	10163	broad.mit.edu	37	1	27736268	27736268	+	Silent	SNP	C	C	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	WASF2	NM_006990	exon8	c.G1257A	p.P419P	AGAAAGCGGTGGT		257	5	0.02	276	1	0.0036231884		41		96	0	0.00			
CELSR2	1952	mdanderson.org	37	1	109792751	109792751	+	Missense_Mutation	SNP	T	T	C	rs200277265		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	CELSR2,colon,carcinoma,0,1	CELSR2	NM_001408	exon1	c.T50C	p.L17P	CGCCGCTGCTGCT		38	3	0.08	51	0	0		0	1	2	0	0.00			
LOC400794	0	broad.mit.edu	37	1	165467666	165467666	+	RNA	DEL	A	A	-	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	.	.	.	.	ATTATTAAAAAAT		6	3	0.50	4	0	0				0	0				
TPR	7175	broad.mit.edu	37	1	186295344	186295344	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	TPR_ENST00000367478,NS,carcinoma,0,2	TPR	NM_003292	exon41	c.T5913A	p.D1971E	ATCATCATCTTCC		103	4	0.04	62	1	0.0161290323		441	2	218	0	0.00			
ARL5B	221079	mdanderson.org	37	10	18948572	18948572	+	Silent	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_178815	exon1	c.G6T	p.G2G	GATGGGGCTGATC		74	4	0.05	95	0	0				10	0	0.00			
PIPSL	0	broad.mit.edu	37	10	95718362	95718365	+	RNA	DEL	TTTC	TTTC	-	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	TTTC	TTTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	.	.	.	.	TTTTCTTTTCTTT		15	10	0.67	12	0	0				0	0				
ALDH18A1	5832	mdanderson.org	37	10	97397175	97397175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001017423	exon4	c.C322A	p.Q108K	TGCCCTGATTCTG		58	4	0.07	67	0	0				126	0	0.00			
TTC40	54777	mdanderson.org	37	10	134672665	134672665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001200049	exon38	c.A5285G	p.D1762G	AGGCCATCATCCA		59	3	0.05	90	1	0.0111111111				0	0				
FJX1	24147	mdanderson.org	37	11	35640729	35640729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_014344	exon1	c.G545T	p.G182V	GCTACGGCATCAA		10	2	0.20	23	0	0				5	0	0.00			
OR5AP2	338675	mdanderson.org	37	11	56409844	56409844	+	Silent	SNP	G	G	A	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001002925	exon1	c.C72T	p.S24S	ATTGTCGGAAAGT		31	3	0.10	33	0	0				0	0				
CTNND1	1500	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	57573388	57573392	+	Frame_Shift_Del	DEL	TATCA	TATCA	-	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	TATCA	TATCA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	CTNND1	NM_001085461	exon10	c.1756_1760del	p.586_587del	GGAACTTATCATA		86	31	0.36	99	0	0		203		61	0	0.00			
ZP1	22917	mdanderson.org	37	11	60640737	60640737	+	Silent	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_207341	exon7	c.G1215T	p.L405L	CCCCCTGCGGCTT		65	4	0.06	113	0	0				0	0				
ZNHIT2	741	mdanderson.org	37	11	64884376	64884376	+	Silent	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_014205	exon1	c.C750A	p.A250A	ACCCAGGGCTCCG		19	2	0.11	36	0	0				41	0	0.00			
RNASEH2C	84153	mdanderson.org	37	11	65487864	65487864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_032193	exon2	c.G197A	p.R66H	AGACAGCGGCCCC		48	3	0.06	82	0	0				193	0	0.00			
PDE2A	5138	broad.mit.edu	37	11	72299854	72299854	+	Silent	SNP	G	G	A	rs138984931	bycluster;byfrequency;by1000genomes	TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	PDE2A	NM_002599	exon13	c.C1044T	p.C348C	GAAGGCGCAGGCC		135	4	0.03	158	0	0		156		1	0	0.00			
PDE3A	5139	broad.mit.edu	37	12	20522511	20522511	+	Missense_Mutation	SNP	C	C	A	rs200052001	bycluster	TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	PDE3A,colon,NS,0,1	PDE3A	NM_000921	exon1	c.C293A	p.A98E	CGGCGGCGGAGGA		88	4	0.05	45	1	0.0222222222		184	1	0	0				
MARS	4141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57898052	57898052	+	Silent	SNP	G	G	C	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	MARS,colon,carcinoma,+1,3	MARS	NM_004990	exon11	c.G1338C	p.S446S	GCAGTCGAGCCAG		187	19	0.10	156	1	0.0064102564		1	3	570	63	0.11			
PLBD2	196463	mdanderson.org	37	12	113826311	113826311	+	Silent	SNP	C	C	T	rs377323141		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_173542	exon12	c.C1650T	p.S550S	GGCCAGCGGTCCC		26	2	0.08	29	0	0				49	0	0.00			
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130184692	130184692	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	TMEM132D,face,carcinoma,0,1	TMEM132D	NM_133448	exon2	c.G631C	p.G211R	TCCTCCCGGCAAC		85	15	0.18	97	0	0		0	1	8	3	0.38			
ULK1	8408	mdanderson.org	37	12	132398927	132398927	+	Silent	SNP	C	C	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_003565	exon16	c.C1278T	p.C426C	CAGGTGCGGCGCC		33	3	0.09	53	0	0				97	0	0.00			
SUGT1P3	0	broad.mit.edu	37	13	41495331	41495332	+	RNA	INS	-	-	A	rs71298970	bycluster	TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	SUGT1P3	.	.	.	.	AGTCATTAAAAAA		10	5	0.50	5	0	0		1		1	0	0.00			
FAM155A	728215	mdanderson.org	37	13	108518661	108518661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	FAM155A,NS,carcinoma,0,2	FAM155A	NM_001080396	exon1	c.A284G	p.Q95R	CGCCGCTGCTGCT		29	2	0.07	25	1	0.04		0	2	8	0	0.00			
COL4A2	1284	mdanderson.org	37	13	111080922	111080922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001846	exon7	c.G469T	p.G157W	TTCACCGGGCCTC		37	3	0.08	75	0	0				111	0	0.00			
GAS6	2621	mdanderson.org	37	13	114542742	114542742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_000820	exon5	c.G425T	p.C142F	CACAGGCAGAAGA		49	3	0.06	98	0	0				67	0	0.00			
CHGA	1113	mdanderson.org	37	14	93398725	93398725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001275	exon7	c.G819T	p.E273D	GTCGGAGGCTCTG		45	3	0.07	91	0	0				72	0	0.00			
NUDT14	256281	mdanderson.org	37	14	105639424	105639424	+	Silent	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_177533	exon5	c.C603A	p.T201T	GCCGAGGGTCTTG		45	3	0.07	58	0	0				122	0	0.00			
VPS13C	54832	broad.mit.edu	37	15	62283898	62283898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	VPS13C	NM_020821	exon17	c.A1457G	p.K486R	TCGTCCTTTTTCT		286	4	0.01	172	0	0		506		1	0	0.00			
IGDCC4	57722	mdanderson.org	37	15	65688201	65688201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_020962	exon7	c.C1298A	p.T433K	ACCCGCGTGGGGG		20	2	0.10	11	0	0				0	0				
PCSK6	5046	broad.mit.edu	37	15	101968168	101968168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	PCSK6	.	.	.	.	TCTCCCGCACAAC		56	3	0.05	71	0	0		202		16	0	0.00			
CLCN7	1186	mdanderson.org	37	16	1510494	1510494	+	Silent	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001287	exon6	c.C519A	p.S173S	GGAGAAGGACAGT		51	3	0.06	58	1	0.0172413793				50	0	0.00			
C16orf59	80178	mdanderson.org	37	16	2514567	2514567	+	Silent	SNP	G	G	A	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_025108	exon10	c.G1200A	p.P400P	ACAGCCGCAGGGG		41	3	0.07	42	0	0				53	0	0.00			
USP7	7874	mdanderson.org	37	16	9057131	9057131	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	USP7,colon,carcinoma,0,1	USP7	NM_003470	exon1	c.G12C	p.Q4H	CTGCTGCTGGTGG		12	3	0.25	17	0	0		0	1	31	0	0.00			
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30748991	30748991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_006662	exon34	c.C7630T	p.P2544S	AATCTCCCCTTGG		117	31	0.26	117	0	0				152	57	0.38			
CNOT1	23019	mdanderson.org	37	16	58589745	58589745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	CNOT1_ENST00000441024,NS,carcinoma,-2,2	CNOT1_ENST00000441024	NM_016284	exon20	c.C2547A	p.N849K	ATAGCTGTTTGCT		49	3	0.06	51	0	0		-2	2	101	0	0.00			
LRRC36	55282	mdanderson.org	37	16	67360773	67360773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_018296	exon1	c.A8G	p.E3G	TGGCGGAGCAATG		16	5	0.31	16	0	0				0	0				
ZFHX3	463	mdanderson.org	37	16	72821624	72821624	+	Silent	SNP	G	G	A	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_006885	exon10	c.C10551T	p.G3517G	ACCGCCGCCGCCG		26	3	0.12	21	0	0				0	0				
PIEZO1	9780	mdanderson.org	37	16	88798823	88798823	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001142864	exon21	c.A2911C	p.T971P	GGCGGGTGCCGCT		68	23	0.34	106	32	0.3018867925				17	2	0.12			
FAM101B	359845	broad.mit.edu	37	17	295717	295717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	FAM101B	.	.	.	.	AGGGGGAGAGACG		538	7	0.01	525	5	0.0095238095		19		18	0	0.00			
SREBF1	6720	broad.mit.edu	37	17	17716753	17716753	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	SREBF1	NM_001005291	exon19	c.C3233G	p.A1078G	GGGCTGGCCCCCG		48	9	0.19	59	3	0.0508474576		47		92	6	0.07			
HDAC5	10014	mdanderson.org	37	17	42155923	42155923	+	Missense_Mutation	SNP	G	G	T	rs377012839	alternate_allele	TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001015053	exon26	c.C3277A	p.L1093M	CCGACAGCAAGGC		45	3	0.07	46	0	0				172	0	0.00			
C17orf104	284071	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42744013	42744016	+	Frame_Shift_Del	DEL	CTAA	CTAA	-	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	CTAA	CTAA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	C17orf104	NM_001145080	exon5	c.733_736del	p.245_246del	ATCATTCTAACTG		153	36	0.24	65	0	0		75		7	0	0.00			
.	0	broad.mit.edu	37	17	62937153	62937154	+	RNA	INS	-	-	TAGA	rs112724309	bycluster	TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	.	.	.	.	GATTAGGTAGATA		6	2	0.33	7	0	0				0	0				
OGFOD3	79701	mdanderson.org	37	17	80361826	80361826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_175902	exon7	c.C686A	p.A229E	ACGTGCGCATGCC		26	2	0.08	40	0	0				50	0	0.00			
CELF4	56853	mdanderson.org	37	18	34844656	34844656	+	Silent	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_020180	exon10	c.C1230A	p.I410I	CTGGGGGATCATT		40	3	0.08	64	0	0				4	0	0.00			
CXXC1	30827	hgsc.bcm.edu	37	18	47812290	47812290	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	CXXC1,NS,carcinoma,0,1	CXXC1	NM_001101654	exon5	c.G468C	p.Q156H	CTGCTGCTGGTGA		75	3	0.04	122	1	0.0081967213		0	1	53	1	0.02			
WDR7	23335	mdanderson.org	37	18	54398712	54398712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_052834	exon14	c.G1873T	p.A625S	CATCCAGCAGTCA		108	5	0.05	115	0	0				3	0	0.00			
APC2	10297	mdanderson.org	37	19	1468858	1468858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_005883	exon15	c.C5558T	p.A1853V	AGCTGGCGACGCT		12	2	0.17	10	0	0				0	0				
LONP1	9361	mdanderson.org	37	19	5720014	5720014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_004793	exon1	c.G130A	p.G44S	AGGTCCGCTGGCC		52	4	0.08	101	0	0				51	0	0.00			
EMR1	2015	mdanderson.org	37	19	6921799	6921799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001974	exon14	c.G1696T	p.G566C	TCCTTTGGCTGTG		71	4	0.06	117	1	0.0085470085				3	0	0.00			
DNMT1	1786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10260600	10260600	+	Silent	SNP	C	C	A	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	DNMT1,NS,carcinoma,0,1	DNMT1	NM_001130823	exon25	c.G2310T	p.A770A	GGTTTCCGCATCA		188	77	0.41	274	0	0		0	1	91	48	0.53			
ASF1B	55723	mdanderson.org	37	19	14236985	14236985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_018154	exon2	c.C174A	p.D58E	CACCGAGTCTAGG		39	3	0.08	83	0	0				106	0	0.00			
MAU2	23383	broad.mit.edu;mdanderson.org	37	19	19466173	19466173	+	Silent	SNP	C	C	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	MAU2	NM_015329	exon18	c.C1740T	p.C580C	GGCCTGCAGCCTC		46	4	0.09	69	0	0		38		51	0	0.00			
SPTBN4	57731	bcgsc.ca	37	19	41025454	41025454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	SPTBN4	NM_020971	exon16	c.G3050T	p.G1017V	GGGCCGGCGGCGC		33	4	0.12	44	0	0		213		0	0				
ARHGEF1	9138	mdanderson.org	37	19	42399474	42399474	+	Silent	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_199002	exon12	c.G975T	p.R325R	CTCTCGGGACCGG		42	3	0.07	37	0	0				69	0	0.00			
ZNF497	162968	mdanderson.org	37	19	58868528	58868528	+	Silent	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_198458	exon3	c.C474A	p.G158G	CTTCTCGCCGCTG		55	4	0.07	61	0	0				9	0	0.00			
NT5C1B	93034	mdanderson.org	37	2	18766181	18766181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001199087	exon5	c.C553A	p.P185T	GCGGCGGTGAGGA		19	2	0.11	26	0	0				0	0				
C2orf81	388963	mdanderson.org	37	2	74642106	74642106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001145054	exon4	c.C1117A	p.R373S	AGGGGCGTGTTTG		39	3	0.08	52	0	0				3	0	0.00			
MIR4436A	0	broad.mit.edu	37	2	89111346	89111346	+	RNA	DEL	C	C	-	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	.	.	.	.	GAGCAACCCCTGG		6	2	0.33	8	0	0				0	0				
ANKRD36	375248	broad.mit.edu	37	2	97877455	97877455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	ANKRD36	NM_001164315	exon58	c.A3446G	p.K1149R	AAAAAAAGGATGA		429	7	0.02	237	1	0.0042194093		170		3	0	0.00			
GPR39	2863	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	133175132	133175132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001508	exon1	c.G517T	p.A173S	CTGTTTGCCATGG		76	4	0.05	117	0	0				2	0	0.00			
TTN	7273	mdanderson.org	37	2	179477207	179477207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001267550	exon266	c.C50045A	p.P16682H	GTGATGGGGGACC		89	4	0.04	109	0	0				1	0	0.00			
FARSB	10056	broad.mit.edu	37	2	223488401	223488401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	FARSB,NS,carcinoma,0,1	FARSB	NM_005687	exon13	c.G1219A	p.A407T	AGCCAGCGGCTGC		450	6	0.01	482	2	0.0041493776		49	1	120	0	0.00			
NGEF	25791	ucsc.edu	37	2	233748732	233748732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	NGEF	NM_019850	exon11	c.C1560A	p.F520L	GAACAGGAAGAGG		41	4	0.10	83	0	0		198		131	0	0.00			
FRG1B	284802	bcgsc.ca	37	20	29628233	29628233	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	FRG1B	.	.	.	.	GGGAAAATGGCTT		418	15	0.04	329	4	0.0121580547		181		79	0	0.00			
BHLHE23	128408	mdanderson.org	37	20	61637701	61637701	+	Silent	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_080606	exon1	c.C378A	p.V126V	GGGGATGACGGCT		24	3	0.13	33	0	0				17	0	0.00			
THAP7-AS1	0	broad.mit.edu	37	22	21357115	21357115	+	RNA	SNP	A	A	G	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	.	.	.	.	ATTTTAATAGGTA		18	3	0.17	24	0	0				10	1	0.10			
HRH1	3269	mdanderson.org	37	3	11301767	11301767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_000861	exon3	c.G1044T	p.E348D	ATCAGAGGATCAG		69	4	0.06	93	0	0				1	0	0.00			
CDC25A	993	mdanderson.org	37	3	48229409	48229409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_201567	exon1	c.G29A	p.R10H	CGGCGGCGGTGCG		23	2	0.09	33	0	0				47	0	0.00			
GLYCTK	132158	mdanderson.org	37	3	52326751	52326751	+	Missense_Mutation	SNP	C	C	A	rs9813489	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_145262	exon5	c.C1181A	p.T394N	TGGAGACCATGGC		40	3	0.08	51	0	0				29	0	0.00			
STAB1	23166	mdanderson.org	37	3	52545761	52545761	+	Silent	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_015136	exon26	c.G2883T	p.L961L	CGGCCTGGTAAGG		41	3	0.07	74	0	0				0	0				
ACTR8	93973	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	53905293	53905293	+	Silent	SNP	C	C	G	rs371208984	alternate_allele	TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	ACTR8	NM_022899	exon11	c.G1533C	p.L511L	TTTATCCAGGCCC		164	12	0.07	208	0	0		56		77	2	0.03			
IMPG2	50939	mdanderson.org	37	3	100963001	100963001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_016247	exon13	c.C2174A	p.T725K	ACAGATGTCAGTA		75	4	0.05	79	0	0				0	0				
KLF3	51274	mdanderson.org	37	4	38696516	38696516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_016531	exon5	c.G845T	p.R282I	ACAGAAGAACACA		34	3	0.09	77	0	0				16	0	0.00			
FRAS1	80144	mdanderson.org	37	4	79284686	79284686	+	Silent	SNP	G	G	A	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_025074	exon21	c.G2442A	p.Q814Q	GTGCCAGCACTGT		44	3	0.07	57	0	0				1	0	0.00			
MAML3	55534	hgsc.bcm.edu	37	4	140811125	140811125	+	Missense_Mutation	SNP	G	G	T	rs62344940		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	MAML3_ENST00000509479,colon,carcinoma,+2,2	MAML3_ENST00000509479	NM_018717	exon2	c.C1465A	p.Q489K	GCTGTTGCTGTTG		52	8	0.15	68	2	0.0294117647		2	2	4	0	0.00			
GAB1	2549	mdanderson.org	37	4	144378923	144378923	+	Splice_Site	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_207123	exon7	c.1675+1G>T	.	GAAAGGGTATGTA		47	3	0.06	42	0	0				0	0				
CLCN3	1182	mdanderson.org	37	4	170557224	170557224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001243372	exon2	c.G145T	p.G49C	TTAGATGGTGACA		45	3	0.07	33	0	0				9	0	0.00			
GALNT7	51809	mdanderson.org	37	4	174169131	174169131	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_017423	exon2	c.G127T	p.E43X	GTATAGGAAGACA		43	3	0.07	51	0	0				24	0	0.00			
TRIP13	9319	mdanderson.org	37	5	893132	893132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001166260	exon1	c.G19T	p.D7Y	GTGGGCGACCTGA		52	3	0.06	68	0	0				45	0	0.00			
SPZ1	84654	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79616895	79616895	+	Silent	SNP	C	C	G	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	SPZ1	NM_032567	exon1	c.C861G	p.V287V	TGGAGTCGGTTTC		327	88	0.27	232	3	0.0129310345		60		5	2	0.40			
UNC5A	90249	broad.mit.edu	37	5	176295152	176295152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	UNC5A	NM_133369	exon3	c.G314T	p.R105L	AGGTCCGCATTAA		159	6	0.04	144	0	0		76		2	0	0.00			
UBR2	23304	broad.mit.edu	37	6	42615876	42615876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	UBR2	NM_015255	exon22	c.G2430T	p.M810I	TGGCATGGAGAGT		299	4	0.01	153	0	0		134		42	0	0.00			
GRID2IP	392862	mdanderson.org	37	7	6590901	6590901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_001145118	exon1	c.C167A	p.A56E	CCCACCGCCAGCC		16	2	0.13	33	0	0				0	0				
LINC00174	285908	mdanderson.org	37	7	65842187	65842187	+	RNA	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	.	.	.	.	GCCGCTGGCAGGC		44	3	0.07	39	0	0				4	0	0.00			
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82582694	82582694	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	Q9Y6V0-3,rectum,carcinoma,0,3	Q9Y6V0-3	NM_014510	exon5	c.A7575C	p.K2525N	TGTTGGTTTTTGT		110	33	0.30	100	0	0		0	3	0	0				
SSPO	23145	mdanderson.org	37	7	149483303	149483303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	Q76B61_HUMAN,colon,carcinoma,-1,2	Q76B61_HUMAN	NM_198455	exon23	c.G3371T	p.W1124L	TGCTCTGGGATGG		38	3	0.08	62	0	0		-1	2	0	0				
ADAMDEC1	27299	broad.mit.edu	37	8	24256526	24256526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	ADAMDEC1	NM_014479	exon9	c.A902G	p.K301R	GGAAAAAGATCCA		173	4	0.02	127	0	0		69		2	0	0.00			
ADAM2	2515	broad.mit.edu	37	8	39678591	39678591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	ADAM2	NM_001464	exon6	c.C443A	p.A148E	ACATCTGCTTTCT		273	6	0.02	100	0	0		124		0	0				
PKHD1L1	93035	broad.mit.edu	37	8	110422126	110422126	+	Silent	SNP	T	T	C	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	PKHD1L1	NM_177531	exon19	c.T2004C	p.T668T	TAGCACTAAGTGT		511	4	0.01	254	0	0		522		0	0				
BNC2	54796	mdanderson.org	37	9	16419625	16419625	+	Missense_Mutation	SNP	G	G	T	rs370046975	alternate_allele	TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	.	NM_017637	exon7	c.C2662A	p.H888N	TACGATGTAGGTT		49	3	0.06	57	0	0				25	0	0.00			
MLLT3	4300	hgsc.bcm.edu;broad.mit.edu	37	9	20414311	20414313	+	In_Frame_Del	DEL	CTG	CTG	-	rs373338988		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	CTG	CTG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	MLLT3,caecum,carcinoma,0,1	MLLT3	NM_004529	exon5	c.532_534del	p.178_178del	CTGCTACTGCTGC		89	18	0.20	75	0	0		125		3	0	0.00			
ZBED1	9189	broad.mit.edu	37	X	2406764	2406764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SN-A84Y-01A-11D-A435-10	TCGA-SN-A84Y-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4995d11c-703d-4935-94e7-2e26ace5db9d	7490b22b-54bc-46e3-8148-e25debbab990	.	ZBED1	NM_001171135	exon2	c.A1997G	p.E666G	CCCCACTCCCCCT		251	14	0.06	331	3	0.0090634441		64		61	0	0.00			
