Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
CSMD2	114784	mdanderson.org	37	1	34276465	34276465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_052896	exon10	c.C1205A	p.A402D	ATGCGGGCTGCAG		49	3	0.06	45	0	0				4	0	0.00			
SUSD4	55061	mdanderson.org	37	1	223396687	223396687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_017982	exon8	c.C1348A	p.Q450K	TCTCTTGGCACCT		39	3	0.08	45	0	0				7	0	0.00			
WDR26	80232	broad.mit.edu	37	1	224581650	224581651	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	GT	GT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	WDR26	NM_025160	exon13	c.1839_1840del	p.613_614del	CTGTACGTGTGTG		266	8	0.03	224	0	0		104		247	0	0.00			
OR6F1	343169	mdanderson.org	37	1	247875953	247875953	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001005286	exon1	c.C105A	p.Y35X	GAGGATGTACATC		41	3	0.07	43	0	0				0	0				
TUBB8	347688	broad.mit.edu	37	10	93106	93106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	TUBB8	NM_177987	exon4	c.C1226T	p.T409I	GCCTCGGTGAATT		52	3	0.06	85	0	0		62		63	0	0.00			
FAM208B	54906	mdanderson.org	37	10	5790488	5790488	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_017782	exon15	c.G5104T	p.E1702X	GAAGCTGAGTTAC		30	3	0.10	38	1	0.0263157895				68	0	0.00			
SKIDA1	387640	mdanderson.org	37	10	21806056	21806056	+	Silent	SNP	G	G	A	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_207371	exon4	c.C696T	p.A232A	AGCAGCGGCGGCG		18	3	0.17	15	0	0				0	0				
ZNF438	220929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	31137859	31137859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_182755	exon7	c.G1475A	p.S492N	ACGGAGCTGGGCT		239	35	0.15	246	0	0				32	1	0.03			
MMRN2	79812	mdanderson.org	37	10	88704996	88704996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_024756	exon4	c.C430A	p.P144T	CACCAGGATCTGC		46	3	0.07	66	0	0				19	0	0.00			
ANKRD1	27063	mdanderson.org	37	10	92675380	92675380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_014391	exon8	c.C769A	p.H257N	CATCATGCAACGG		53	3	0.06	74	0	0				0	0				
HSPA12A	259217	bcgsc.ca;mdanderson.org	37	10	118458220	118458220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	HSPA12A	NM_025015	exon5	c.G472A	p.A158T	CATTTGCTGCCGT		72	5	0.07	80	0	0		81		8	0	0.00			
GPR26	2849	mdanderson.org	37	10	125426014	125426014	+	Silent	SNP	C	C	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_153442	exon1	c.C91T	p.L31L	TGCCTGCTGCACA		37	3	0.08	36	0	0				0	0				
CTBP2	1488	mdanderson.org	37	10	126715930	126715930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	CTBP2,caecum,carcinoma,0,1	CTBP2	NM_022802	exon1	c.C399A	p.S133R	CGGCCGGCTGACT		30	3	0.10	53	0	0		0	1	1	0	0.00			
DHX32	55760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127526837	127526837	+	Silent	SNP	G	G	A	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_018180	exon10	c.C2001T	p.F667F	TTTATGGAAGAGG		72	28	0.39	71	0	0				79	39	0.49			
MUC2	4583	mdanderson.org	37	11	1078504	1078504	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_002457	exon6	c.C712G	p.Q238E	GACTGTCAGGACC		24	3	0.13	20	0	0				0	0				
TSG101	7251	broad.mit.edu	37	11	18505466	18505466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	TSG101,NS,carcinoma,0,1	TSG101	NM_006292	exon8	c.A794G	p.K265R	TGACCCTTTTTCA		120	3	0.03	105	2	0.019047619		43	1	581	0	0.00			
FEN1	2237	mdanderson.org	37	11	61563042	61563042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_004111	exon2	c.G209T	p.R70L	TCTACCGCACCAT		41	3	0.07	55	0	0				221	0	0.00			
TBX10	347853	ucsc.edu;bcgsc.ca	37	11	67399115	67399115	+	Silent	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	TBX10	NM_005995	exon8	c.C1119A	p.P373P	CACAGTGGGGGAC		25	4	0.16	22	0	0		25		0	0				
INPPL1	3636	mdanderson.org	37	11	71942580	71942580	+	Silent	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001567	exon13	c.G1536T	p.V512V	GGCAGTGCTGGTC		42	3	0.07	55	0	0				160	0	0.00			
SIDT2	51092	bcgsc.ca	37	11	117064645	117064647	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	TCT	TCT					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	SIDT2	NM_001040455	exon24	c.2288_2290del	p.763_764del	TCGCGCTCTTCTT		33	5	0.15	100	0	0		82		82	0	0.00			
NCAPD3	23310	mdanderson.org	37	11	134063930	134063930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_015261	exon15	c.C1805A	p.S602Y	GTAAGAGACTGGA		47	3	0.06	84	0	0				32	0	0.00			
PLCZ1	89869	mdanderson.org	37	12	18837085	18837085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_033123	exon14	c.C1720A	p.P574T	GAAGTGGCAAAGT		128	5	0.04	79	0	0				0	0				
CAPZA3	93661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	18891950	18891950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_033328	exon1	c.G748A	p.E250K	TCCAATGAAGCCC		58	18	0.31	41	0	0				0	0				
KIF21A	55605	broad.mit.edu	37	12	39735383	39735383	+	Silent	SNP	C	C	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	KIF21A,NS,carcinoma,0,2	KIF21A	NM_001173464	exon14	c.G1845A	p.E615E	CTCCTCCTCTTCT		144	3	0.02	128	0	0		238	2	27	0	0.00			
ESYT1	23344	broad.mit.edu	37	12	56532024	56532024	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	ESYT1	NM_001184796	exon21	c.A2335C	p.T779P	CGTCTCACCCCCC		132	9	0.07	120	1	0.0083333333		84		144	6	0.04			
KIAA1033	23325	mdanderson.org	37	12	105505042	105505042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_015275	exon2	c.G201T	p.K67N	ATTAAAGGTTTGA		46	3	0.07	43	0	0				28	0	0.00			
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	129190461	129190461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001136103	exon9	c.G2948A	p.S983N	TGGAGAGCATGGG		86	7	0.08	88	0	0				31	2	0.06			
TMEM132D	121256	broad.mit.edu	37	12	130184606	130184606	+	Silent	SNP	G	G	A	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	TMEM132D,NS,carcinoma,0,1	TMEM132D	NM_133448	exon2	c.C717T	p.C239C	CCTGACGCAGTCC		86	4	0.05	110	0	0		299	1	10	3	0.30			
TPTE2	93492	bcgsc.ca	37	13	20056686	20056686	+	Missense_Mutation	SNP	T	T	C	rs201542496		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	TPTE2	NM_199254	exon5	c.A121G	p.M41V	CTAACATACTTTA		459	15	0.03	575	6	0.0104347826		225		3	0	0.00			
CBLN3	643866	broad.mit.edu	37	14	24898130	24898130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	CBLN3	NM_001039771	exon1	c.A131G	p.E44G	AGGCACTCCCCCT		140	5	0.04	134	0	0		21		3	0	0.00			
TXNDC16	57544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52978069	52978069	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_020784	exon9	c.T645A	p.H215Q	TTTACAATGAAAA		249	80	0.32	275	0	0				5	2	0.40			
TTC7B	145567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	91252656	91252656	+	Silent	SNP	A	A	G	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001010854	exon2	c.T138C	p.L46L	GAGGAGAAGCTCT		66	12	0.18	50	0	0				39	6	0.15			
JAG2	3714	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	105609508	105609508	+	Splice_Site	SNP	C	C	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_002226	exon27	c.3242-1G>A	.	GCAGACCTGGGGA		23	11	0.48	14	0	0				42	33	0.79			
FAN1	22909	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	31197594	31197594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	FAN1	NM_001146095	exon2	c.A728G	p.K243R	GCCAAAAGGCTAC		131	5	0.04	135	0	0		77		73	0	0.00			
MAN2C1	4123	broad.mit.edu;mdanderson.org	37	15	75650586	75650586	+	Silent	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	MAN2C1	NM_001256494	exon21	c.C2554A	p.R852R	TAGGTCGCTGCAG		116	5	0.04	104	0	0		76		57	0	0.00			
MESDC1	59274	mdanderson.org	37	15	81295326	81295326	+	Silent	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_022566	exon1	c.G714T	p.A238A	GGTGGCGCCCAGT		11	2	0.18	11	0	0				52	0	0.00			
MEX3B	84206	mdanderson.org	37	15	82338001	82338001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_032246	exon1	c.G46A	p.G16S	CGCCGCCGCCGCT		21	3	0.14	25	0	0				15	0	0.00			
ATF7IP2	80063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	10534303	10534303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_024997	exon6	c.G1178A	p.S393N	TATCCAGTAATGG		344	24	0.07	348	0	0				5	1	0.20			
NOMO1	23420	bcgsc.ca	37	16	14973920	14973920	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	NOMO1	NM_014287	exon24	c.G2806C	p.E936Q	CGGTTTGAGCCAT		1181	300	0.25	1119	5	0.0044682752		60		103	20	0.19			
SH2B1	25970	broad.mit.edu	37	16	28877475	28877475	+	Silent	SNP	A	A	C	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	SH2B1	NM_001145796	exon2	c.A60C	p.P20P	GCCCCCACCCCCG		55	15	0.27	51	3	0.0588235294		160		12	0	0.00			
CORO1A	11151	mdanderson.org	37	16	30198195	30198195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001193333	exon5	c.T380C	p.L127P	TCACCCTGGAGGG		42	3	0.07	39	1	0.0256410256				166	0	0.00			
TAF1C	9013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	84212696	84212698	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	TGG	TGG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	TAF1C	NM_005679	exon14	c.2460_2462del	p.820_821del	GTAGCTTGGCCAT		38	11	0.29	49	0	0		60		251	93	0.37			
CPNE7	27132	mdanderson.org	37	16	89655121	89655121	+	Silent	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_014427	exon12	c.G1191T	p.R397R	CCCGCGGAACAGC		39	3	0.08	38	0	0				0	0				
RTN4RL1	146760	mdanderson.org	37	17	1840603	1840603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_178568	exon2	c.C513A	p.D171E	GACCAGGTCCACG		40	4	0.10	41	0	0				19	1	0.05			
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		171	21	0.12	246	8	0.0325203252				64	32	0.50			
TNRC6C	57690	mdanderson.org	37	17	76047438	76047438	+	Silent	SNP	C	C	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_018996	exon4	c.C2295T	p.T765T	CACCACCACTACC		42	3	0.07	58	0	0				52	0	0.00			
AZI1	22994	broad.mit.edu	37	17	79174197	79174197	+	Silent	SNP	G	G	T	rs138379046	alternate_allele	TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	AZI1	NM_014984	exon8	c.C838A	p.R280R	GGTGCCGGTACCA		122	4	0.03	109	0	0		145		91	0	0.00			
FOXK2	3607	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	80478070	80478070	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_004514	exon1	c.G306C	p.Q102H	CGCGCAGCCCAGG		130	29	0.22	45	0	0				31	5	0.16			
MEX3C	51320	mdanderson.org	37	18	48703101	48703101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_016626	exon2	c.C1600A	p.R534S	CTCTGCGCTGAGT		55	3	0.05	113	0	0				236	0	0.00			
DSEL	92126	mdanderson.org	37	18	65178556	65178556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_032160	exon2	c.C3320A	p.S1107Y	AAGAGGGACACTG		8	2	0.25	28	0	0				4	0	0.00			
MIER2	54531	mdanderson.org	37	19	308655	308655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_017550	exon12	c.C1120A	p.Q374K	GGTCCTGGTCTGC		47	3	0.06	49	0	0				276	0	0.00			
ZNF812	729648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9801772	9801772	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001199814	exon6	c.T407A	p.L136H	TTGGAAAGTTCCT		141	48	0.34	96	0	0				0	0				
CACNA1A	773	bcgsc.ca	37	19	13443726	13443726	+	Silent	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	CACNA1A	NM_001127222	exon9	c.C1212A	p.L404L	CTCGGCGAGGATC		48	4	0.08	41	0	0		715		1	0	0.00			
PODNL1	79883	mdanderson.org	37	19	14044048	14044048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_024825	exon8	c.C1009T	p.R337W	GGCCCCGCAGCGG		10	2	0.20	16	0	0				3	0	0.00			
SUGP2	10147	broad.mit.edu	37	19	19105286	19105286	+	Silent	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	SUGP2	NM_014884	exon10	c.C3138A	p.P1046P	TTCCGAGGGGGTT		163	4	0.02	189	0	0		107		111	0	0.00			
PAFAH1B3	5050	mdanderson.org	37	19	42806398	42806398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_002573	exon1	c.C64A	p.R22S	TCCAGCGCCCGTC		50	3	0.06	62	0	0				435	3	0.01			
CLASRP	11129	mdanderson.org	37	19	45567750	45567750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_007056	exon13	c.G1271T	p.R424L	GGTCCCGCTCCCG		16	3	0.19	21	0	0				131	0	0.00			
NKPD1	284353	mdanderson.org	37	19	45661943	45661943	+	Silent	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_198478	exon2	c.C507A	p.G169G	GAAGGAGCCACAG		19	2	0.11	19	0	0				5	0	0.00			
KLK10	5655	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	51518067	51518067	+	Missense_Mutation	SNP	G	G	T	rs370110864	alternate_allele	TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	KLK10,NS,carcinoma,+1,1	KLK10	NM_145888	exon6	c.C820A	p.R274S	TGGAGCGTATGAC		64	4	0.06	73	0	0		1	1	5	0	0.00			
LILRB3	11025	mdanderson.org	37	19	54724044	54724044	+	Silent	SNP	T	T	A	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_006864	exon7	c.A1290T	p.T430T	CGGCCCTGTGGGT		42	3	0.07	40	0	0				3	0	0.00			
RNASEH1	246243	bcgsc.ca;mdanderson.org	37	2	3605788	3605788	+	Silent	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	RNASEH1	NM_002936	exon1	c.C63A	p.G21G	GCGAGAGCCGCGG		91	5	0.05	55	0	0		27		201	0	0.00			
WDR35	57539	ucsc.edu	37	2	20113319	20113319	+	Silent	SNP	T	T	C	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	WDR35	NM_001006657	exon28	c.A3546G	p.X1182X	ATTCCTTTATCCC		203	1	0.00	118	0	0		92		24	7	0.29			
DPYSL5	56896	mdanderson.org	37	2	27150268	27150268	+	Missense_Mutation	SNP	G	G	T	rs144366814	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_020134	exon4	c.G568T	p.V190F	GCCCGCGTCCATG		129	5	0.04	91	0	0				120	0	0.00			
HK2	3099	broad.mit.edu	37	2	75107420	75107420	+	Missense_Mutation	SNP	C	C	T	rs148796379	bycluster;byfrequency	TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	HK2	NM_000189	exon10	c.C1294T	p.R432W	ACCGTGCGGCGGC		139	4	0.03	93	0	0		85		41	1	0.02			
LINC00152	0	broad.mit.edu	37	2	87778085	87778086	+	RNA	INS	-	-	A	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	.	.	.	.	TATCTATAAAAAA		8	2	0.25	6	0	0				0	0				
DPP4	1803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162865128	162865128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001935	exon22	c.G1931A	p.S644N	ACGCCACTTCCCG		123	18	0.15	82	0	0				3	0	0.00			
DUSP19	142679	mdanderson.org	37	2	183960356	183960356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_080876	exon4	c.G624T	p.K208N	CAATAAGTGTGAC		89	4	0.04	77	0	0				16	0	0.00			
TTLL4	9654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	219603651	219603651	+	Missense_Mutation	SNP	C	C	T	rs200872563	by1000genomes	TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_014640	exon3	c.C1252T	p.R418C	ACCAAGCGTATCA		147	6	0.04	99	0	0	0			149	10	0.07			
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225370731	225370731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001257198	exon8	c.G1166T	p.R389M	GGAGACCTGGAGT		329	138	0.42	241	0	0				192	89	0.46			
IQCA1	79781	broad.mit.edu	37	2	237327853	237327855	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	TTC	TTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	IQCA1	NM_001270585	exon8	c.1092_1094del	p.364_365del	TCCTTTTTCTTCT		785	7	0.01	619	0	0		170		4	0	0.00			
GATSL3	652968	mdanderson.org	37	22	30685382	30685382	+	Silent	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001037666	exon1	c.C105A	p.R35R	GCTGCGGCGGGGC		36	3	0.08	20	0	0				35	0	0.00			
ELFN2	114794	mdanderson.org	37	22	37770851	37770851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_052906	exon3	c.C724A	p.Q242K	TGGCCTGGAGTAC		43	3	0.07	30	0	0				8	0	0.00			
FBLN1	2192	hgsc.bcm.edu;broad.mit.edu	37	22	45928977	45928977	+	Silent	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_006487	exon6	c.G579T	p.T193T	AGACACGGGTGAC		113	6	0.05	108	0	0				1125	0	0.00			
TUBGCP6	85378	broad.mit.edu	37	22	50656423	50656423	+	Silent	SNP	A	A	C	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	TUBGCP6	NM_020461	exon24	c.T5292G	p.G1764G	CTCTGCACCCCGC		44	13	0.30	55	8	0.1454545455		132		72	13	0.18			
TATDN2	9797	mdanderson.org	37	3	10318068	10318068	+	Silent	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_014760	exon5	c.G1857T	p.L619L	GCAGCTGGCTGTG		49	3	0.06	48	0	0				78	0	0.00			
ZNF619	285267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	40519494	40519494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001145083	exon2	c.G46T	p.A16S	GTTCCAGGTGAGC		90	5	0.06	106	0	0				0	0				
ABTB1	80325	mdanderson.org	37	3	127396684	127396684	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_172027	exon10	c.G1027T	p.E343X	CACACTGAGGTGG		45	3	0.07	34	0	0				72	0	0.00			
DNAJC13	23317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132224196	132224196	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_015268	exon42	c.C4935G	p.N1645K	ATGGAACAATTCT		534	219	0.41	580	0	0				133	56	0.42			
PRR23A	729627	broad.mit.edu	37	3	138724758	138724758	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	PRR23A,NS,carcinoma,+1,1	PRR23A	NM_001134659	exon1	c.C353A	p.S118X	GCAGACGAGTCGT		215	5	0.02	219	0	0		35	1	29	0	0.00			
NAALADL2	254827	mdanderson.org	37	3	175473106	175473106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_207015	exon13	c.C2089A	p.P697T	AATGATCCCAAGG		63	4	0.06	76	0	0				0	0				
FGFR3	2261	mdanderson.org	37	4	1803151	1803151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_022965	exon5	c.C503T	p.A168V	TGCCGGCCGCCAA		20	3	0.15	60	0	0				438	0	0.00			
QRFPR	84109	broad.mit.edu	37	4	122261656	122261656	+	Silent	SNP	A	A	G	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	QRFPR	NM_198179	exon2	c.T450C	p.P150P	TTTAAAAGGATGC		79	3	0.04	121	0	0		65		3	0	0.00			
FBN2	2201	broad.mit.edu	37	5	127648441	127648441	+	Silent	SNP	A	A	G	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	FBN2	NM_001999	exon37	c.T4764C	p.D1588D	ACTCCCATCTCCT		105	3	0.03	150	0	0		858		0	0				
PURA	5813	mdanderson.org	37	5	139494333	139494333	+	Silent	SNP	G	G	A	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	PURA,NS,carcinoma,+1,1	PURA	NM_005859	exon1	c.G567A	p.A189A	CATTGCGCTGCCC		35	3	0.09	64	0	0		1	1	35	0	0.00			
SLC4A9	83697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	139741434	139741434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001258428	exon4	c.C619A	p.P207T	GAAGCCCCCCTGA		167	22	0.13	288	0	0				0	0				
GALNT10	55568	mdanderson.org	37	5	153709200	153709200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_198321	exon4	c.G470T	p.G157V	ACGAGGGCTGGTC		80	4	0.05	129	0	0				13	0	0.00			
RAB24	53917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176729427	176729427	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001031677	exon5	c.A404C	p.D135A	TGGAAGTCCACAC		57	4	0.07	78	0	0				46	6	0.13			
MGAT4B	11282	ucsc.edu	37	5	179226299	179226299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	MGAT4B	NM_054013	exon9	c.C1098A	p.D366E	CTGCCGGTCACAG		42	4	0.10	60	0	0		41		216	0	0.00			
DPCR1	135656	hgsc.bcm.edu	37	6	30917807	30917807	+	Silent	SNP	C	C	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_080870	exon2	c.C1566T	p.H522H	AGAACACGGAGAA		74	6	0.08	88	0	0				0	0				
LY6G5B	58496	broad.mit.edu	37	6	31639910	31639910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	LY6G5B	NM_021221	exon3	c.A457G	p.T153A	GCTGGGACGGAGC		176	5	0.03	203	1	0.0049261084		8		69	0	0.00			
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	66094357	66094357	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001142801	exon8	c.A1221T	p.K407N	AATTGCTTTCTCA		85	30	0.35	81	0	0				0	0				
TMEM200A	114801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	130762743	130762743	+	Silent	SNP	G	G	T	rs141571184	alternate_allele	TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_001258277	exon3	c.G1176T	p.S392S	GCTCTCGTCACAC		63	20	0.32	65	0	0				4	2	0.50			
PMS2CL	0	broad.mit.edu	37	7	6786205	6786206	+	RNA	INS	-	-	T	rs370173844		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	.	.	.	.	TAGACTGTTTTTT		9	3	0.33	7	0	0				0	0				
PLEKHA8	84725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	30129789	30129789	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_032639	exon13	c.T1321G	p.X441G	AACACTTGACACC		332	38	0.11	249	0	0				2	1	0.50			
GTF2IRD2P1	0	broad.mit.edu;bcgsc.ca	37	7	72663998	72663998	+	RNA	SNP	T	T	G	rs2539034	bycluster	TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	.	.	.	.	CCGGGGTCCTTGA		172	8	0.05	129	2	0.015503876				1	0	0.00			
ARHGEF5	7984	broad.mit.edu	37	7	144062343	144062343	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	ARHGEF5	NM_005435	exon2	c.A2581G	p.R861G	AGGGGGAGGAGCA		567	6	0.01	563	2	0.0035523979		73		39	0	0.00			
DLC1	10395	broad.mit.edu	37	8	12957624	12957624	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	DLC1,bladder,carcinoma,0,3	DLC1	NM_182643	exon9	c.G2222C	p.S741T	CTGCTGCTGGTCT		89	4	0.04	76	0	0		411	3	18	0	0.00			
CA8	767	broad.mit.edu	37	8	61144876	61144876	+	Silent	SNP	C	C	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	CA8	NM_004056	exon4	c.G480A	p.P160P	TCCGTGCGGCTTC		161	4	0.02	107	0	0		31		8	0	0.00			
PTPRD	5789	mdanderson.org	37	9	8376014	8376014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_002839	exon39	c.C4583A	p.P1528H	GGTGTAGGGTGTT		119	5	0.04	100	0	0				1	0	0.00			
ALDH1A1	216	mdanderson.org	37	9	75543822	75543822	+	Missense_Mutation	SNP	C	C	T	rs149236405		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_000689	exon4	c.G428A	p.R143H	ATTGTACGGCCCT		91	4	0.04	121	1	0.0082644628	0			15	0	0.00			
PHF2	5253	broad.mit.edu	37	9	96408040	96408040	+	Silent	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	PHF2	NM_005392	exon4	c.G429T	p.T143T	CCCCACGTTCTAT		57	3	0.05	79	0	0		113		69	1	0.01			
CCDC180	0	mdanderson.org	37	9	100075592	100075592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_020893	exon5	c.G556T	p.A186S	GCTCTGGCCAGCT		39	3	0.08	70	0	0				3	0	0.00			
NUP188	23511	mdanderson.org	37	9	131764184	131764184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_015354	exon36	c.G4066T	p.A1356S	GCTGGAGCTGGCA		43	3	0.07	87	0	0				139	1	0.01			
MED27	9442	bcgsc.ca	37	9	134814839	134814839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	MED27	NM_001253881	exon4	c.C502T	p.R168C	CAATGCGGCTGAT		43	4	0.09	52	0	0		37		24	0	0.00			
COL5A1	1289	mdanderson.org	37	9	137696858	137696858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	NM_000093	exon40	c.G3152T	p.G1051V	AAGATGGCCCTCC		67	4	0.06	88	0	0				170	0	0.00			
FAM157B	0	broad.mit.edu	37	9	141124391	141124392	+	RNA	DEL	TG	TG	-	rs367820400	alternate_allele	TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	.	.	.	.	.	GTGTTTTGTTTTT		13	3	0.23	21	0	0				0	0				
CDKL5	6792	broad.mit.edu	37	X	18622108	18622108	+	Missense_Mutation	SNP	G	G	T	rs189400843	bycluster;by1000genomes;alternate_allele	TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	CDKL5	NM_003159	exon12	c.G1064T	p.R355L	TGCCCCGGGCTGA		257	4	0.02	222	1	0.0045045045		124		19	0	0.00			
F8	2157	broad.mit.edu	37	X	154133089	154133089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-SO-A8JP-01A-11D-A435-10	TCGA-SO-A8JP-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d8f0ba93-fcd8-4209-871e-8c7c2a4c0103	e5745f56-83f7-4400-a405-ca157b25933f	.	F8	NM_000132	exon16	c.C5583A	p.D1861E	TACCAGGTCAACA		122	4	0.03	98	0	0		646		16	0	0.00			
