Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
SCNN1D	6339	broad.mit.edu	37	1	1221416	1221416	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SCNN1D	NM_001130413	exon7	c.G669A	p.L223L	GGAGCTGCTCACC		100	3	0.03	110	0	0		60		0	0				
SKI	6497	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2235825	2235825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SKI	NM_003036	exon5	c.C1568T	p.S523L	TGCCCTCGGCCGT		57	28	0.49	78	1	0.0128205128		33		24	13	0.54			
PLOD1	5351	broad.mit.edu	37	1	12034807	12034808	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PLOD1	NM_000302	exon19	c.2126_2127insG	p.E709fs	ACCATGAGGGGCT		327	7	0.02	283	0	0		75		375	0	0.00			
TMEM82	388595	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16069671	16069671	+	Silent	SNP	G	G	A	rs138383534	bycluster;byfrequency;by1000genomes	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001013641	exon3	c.G318A	p.T106T	GTCCACGCTGCTG		38	8	0.21	24	0	0	0.003			0	0				
FBLIM1	54751	broad.mit.edu	37	1	16091540	16091540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FBLIM1	NM_001024215	exon2	c.G62T	p.R21L	CCCCGCGCCGCGA		62	3	0.05	53	0	0		46		85	0	0.00			
NBPF1	55672	broad.mit.edu	37	1	16907261	16907262	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	CAGCATCCTGACA		1154	3	0.00	1116	0	0				0	0				
PADI6	353238	broad.mit.edu	37	1	17718621	17718621	+	RNA	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PADI6	NM_207421	exon9	c.G975A	p.L325L	GCAGCTGCAGGGT		290	4	0.01	273	1	0.0036630037		51		0	0				
UBR4	23352	broad.mit.edu	37	1	19482779	19482779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	UBR4	NM_020765	exon42	c.G6058A	p.A2020T	AGTCTGCGGTGAC		317	6	0.02	296	2	0.0067567568		415		1	0	0.00			
SLC30A2	7780	broad.mit.edu	37	1	26368222	26368222	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLC30A2	NM_001004434	exon6	c.C807A	p.I269I	TCTCAGGATGGTC		247	6	0.02	104	0	0		29		8	0	0.00			
FAM46B	115572	broad.mit.edu	37	1	27332836	27332836	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	FAM46B,NS,carcinoma,+1,1	FAM46B	NM_052943	exon2	c.C877A	p.R293R	TGGGCCGGGGCCG		161	3	0.02	76	0	0		44	1	484	0	0.00			
MECR	51102	broad.mit.edu	37	1	29522739	29522739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MECR	NM_016011	exon8	c.A862G	p.M288V	TGGCCATCCCCCC		391	8	0.02	206	2	0.0097087379		31		161	0	0.00			
MATN1	4146	broad.mit.edu	37	1	31194457	31194458	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MATN1	NM_002379	exon2	c.236_237insC	p.R79fs	CCCACCCGGGTGG		260	6	0.02	141	0	0		28		0	0				
KPNA6	23633	broad.mit.edu	37	1	32623874	32623874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KPNA6	NM_012316	exon5	c.G338T	p.S113I	AGCCTAGTCCTCC		304	5	0.02	196	2	0.0102040816		34		20	0	0.00			
TSSK3	81629	broad.mit.edu	37	1	32829624	32829624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TSSK3	NM_052841	exon2	c.G574T	p.D192Y	AAAGGTGATGTCT		245	7	0.03	157	2	0.0127388535		22		7	0	0.00			
YARS	8565	broad.mit.edu	37	1	33241605	33241605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	YARS	NM_003680	exon13	c.C1564A	p.L522M	CTTTCAGCGATTT		233	4	0.02	144	0	0		34		1759	0	0.00			
ZMYM1	79830	broad.mit.edu	37	1	35579584	35579584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZMYM1	NM_024772	exon10	c.G2153T	p.S718I	ATGATAGCACCAC		664	6	0.01	370	1	0.0027027027		86		23	0	0.00			
KIAA0319L	79932	broad.mit.edu	37	1	35944611	35944611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KIAA0319L	NM_024874	exon4	c.C869A	p.P290H	GGGGTAGGGGTAG		222	4	0.02	114	0	0		156		5	0	0.00			
DNALI1	7802	broad.mit.edu	37	1	38027269	38027269	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DNALI1	NM_003462	exon4	c.G575T	p.S192I	ACGAGAGCAGCGT		249	4	0.02	142	0	0		25		58	0	0.00			
FHL3	2275	broad.mit.edu	37	1	38465022	38465022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FHL3	NM_004468	exon2	c.G63T	p.Q21H	GTCTGTCTGGATG		225	3	0.01	143	0	0		9		63	0	0.00			
MACF1	23499	broad.mit.edu	37	1	39852903	39852903	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MACF1	NM_012090	exon54	c.C8203T	p.Q2735X	ACCCAGCAGTTCC		240	4	0.02	147	0	0		909		4	0	0.00			
OXCT2	64064	broad.mit.edu	37	1	40235515	40235515	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	OXCT2	NM_022120	exon1	c.C1413A	p.A471A	AAACACGGCCTTC		969	8	0.01	464	0	0		12		32	0	0.00			
RIMS3	9783	broad.mit.edu	37	1	41094487	41094487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RIMS3	NM_014747	exon7	c.C709A	p.L237M	CCTGCAGCACCTT		203	5	0.02	100	0	0		44		11	0	0.00			
SZT2	23334	broad.mit.edu	37	1	43868912	43868912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	SZT2_ENST00000562955,NS,carcinoma,+1,4	SZT2	NM_015284	exon2	c.G92A	p.R31H	ATGTTCGCCTGGC		263	4	0.02	146	0	0		383	4	3	0	0.00			
ATP6V0B	533	broad.mit.edu	37	1	44442294	44442294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ATP6V0B	NM_004047	exon5	c.G311T	p.G104V	TCTACGGCATCAT		259	4	0.02	164	0	0		22		1048	0	0.00			
BEST4	266675	broad.mit.edu	37	1	45250928	45250928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	BEST4,colon,carcinoma,0,1	BEST4	NM_153274	exon6	c.G764A	p.R255H	AACTGGCGGCCAA		687	8	0.01	378	0	0		20	1	3	0	0.00			
PTCH2	8643	broad.mit.edu	37	1	45294672	45294672	+	Silent	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PTCH2	NM_003738	exon11	c.G1446T	p.L482L	GCCAGGCAGAGCC		240	5	0.02	159	2	0.0125786164		96		46	0	0.00			
MUTYH	4595	broad.mit.edu	37	1	45796995	45796995	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MUTYH	NM_001128425	exon14	c.C1335A	p.T445T	AGAGAAGGTGTGG		214	3	0.01	111	0	0		38		202	0	0.00			
EFCAB14	9813	broad.mit.edu	37	1	47154204	47154204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_014774	exon7	c.C808A	p.L270I	TGTGAAGGTACAG		273	4	0.01	164	0	0				13	0	0.00			
CDCP2	200008	broad.mit.edu	37	1	54605300	54605300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CDCP2	NM_201546	exon4	c.C1243A	p.L415I	GAAGGAGCTGGAG		261	5	0.02	192	1	0.0052083333		52		0	0				
INADL	10207	broad.mit.edu	37	1	62261198	62261198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	INADL	NM_176877	exon10	c.G1228T	p.G410C	CACAATGGCCACA		214	5	0.02	165	0	0		179		10	0	0.00			
LRRC40	55631	broad.mit.edu	37	1	70650540	70650540	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LRRC40	NM_017768	exon4	c.C465A	p.C155X	ATACAGGCACTTC		226	4	0.02	179	0	0		66		24	0	0.00			
USP33	23032	broad.mit.edu	37	1	78194095	78194096	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	USP33	NM_201626	exon11	c.1113_1114insA	p.K371fs	ATTAATCTTATTG		263	6	0.02	155	0	0		87		34	0	0.00			
PKN2	5586	broad.mit.edu	37	1	89270133	89270134	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PKN2	NM_006256	exon9	c.1341_1342insT	p.K447fs	TGTAAAATTTCTG		325	7	0.02	218	0	0		109		8	0	0.00			
GBP2	2634	broad.mit.edu	37	1	89579899	89579900	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	GBP2,NS,malignant_melanoma,+1,1	GBP2	NM_004120	exon7	c.949_950insC	p.L317fs	GGGCCAAGGCCAG		429	7	0.02	298	0	0		58	1	19	0	0.00			
PRPF38B	55119	broad.mit.edu	37	1	109238796	109238796	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PRPF38B	NM_018061	exon3	c.G477T	p.A159A	TAGAGCGCTTGGA		403	10	0.02	290	1	0.0034482759		55		51	0	0.00			
STXBP3	6814	broad.mit.edu	37	1	109350028	109350028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	STXBP3	NM_007269	exon18	c.G1541T	p.R514L	GTGCTCGCCAGAA		239	3	0.01	129	1	0.007751938		44		94	0	0.00			
AKNAD1	254268	broad.mit.edu	37	1	109377673	109377673	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	AKNAD1	NM_152763	exon8	c.C1542A	p.P514P	CTCCTTGGGAATC		296	4	0.01	208	0	0		83		0	0				
KCNC4	3749	hgsc.bcm.edu	37	1	110768693	110768694	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KCNC4	NM_001039574	exon3	c.1712_1713insC	p.R571fs	AGGAGCGCCGGGC		199	11	0.06	139	0	0		113		16	0	0.00			
OVGP1	5016	bcgsc.ca	37	1	111957533	111957533	+	Silent	SNP	C	C	T	rs112145355	bycluster	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	OVGP1	NM_002557	exon11	c.G1590A	p.Q530Q	CACAGACTGATGA		192	35	0.18	120	2	0.0166666667		177		1	0	0.00			
CD101	9398	broad.mit.edu	37	1	117564466	117564466	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CD101	NM_001256109	exon7	c.G2289A	p.L763L	TCAGCTGCACATT		243	4	0.02	183	1	0.0054644809		95		4	0	0.00			
PDE4DIP	9659	broad.mit.edu	37	1	144882849	144882849	+	Missense_Mutation	SNP	G	G	A	rs150222697	bycluster	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	PDE4DIP_ENST00000369356,NS,carcinoma,+1,2	PDE4DIP	NM_001198832	exon27	c.C3368T	p.A1123V	AGCTCCGCATTCT		356	6	0.02	256	1	0.00390625		817	2	0	0				
PDE4DIP	9659	broad.mit.edu	37	1	144921887	144921887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PDE4DIP	NM_001002811	exon5	c.C1631A	p.A544D	GCTGCAGCCTCTA		312	3	0.01	222	1	0.0045045045		817		20	0	0.00			
SNX27	81609	broad.mit.edu	37	1	151665438	151665438	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SNX27	NM_030918	exon10	c.G1441T	p.E481X	ACAGATGAAGAAG		233	4	0.02	204	2	0.0098039216		44		7	0	0.00			
TDRKH	11022	broad.mit.edu	37	1	151751708	151751708	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TDRKH	NM_001083965	exon5	c.C432T	p.G144G	TGTCTCGCCGCCT		188	3	0.02	138	0	0		45		10	0	0.00			
LOR	4014	broad.mit.edu	37	1	153233476	153233476	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LOR	NM_000427	exon2	c.G51T	p.V17V	CTGCGTGAAGACC		206	4	0.02	155	1	0.0064516129		19		0	0				
BCAN	63827	broad.mit.edu	37	1	156626126	156626126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	BCAN,NS,carcinoma,+2,1	BCAN	NM_021948	exon9	c.G1995T	p.E665D	GGAGGAGGAAGGG		224	3	0.01	140	0	0		174	1	4	0	0.00			
NTRK1	4914	broad.mit.edu	37	1	156846300	156846300	+	Nonsense_Mutation	SNP	G	G	T	rs150579345	bycluster;byfrequency;alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	NTRK1_ENST00000392302,NS,carcinoma,-2,2	NTRK1	NM_002529	exon14	c.G1741T	p.E581X	TGCACCGAGGGCC		173	3	0.02	108	0	0		287	2	0	0				
NR1I3	0	broad.mit.edu	37	1	161202704	161202704	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	NR1I3_ENST00000428574,NS,carcinoma,0,2	NR1I3	NM_001077481	exon5	c.C441A	p.P147P	GGGCAAGGGCTGG		261	3	0.01	178	0	0		74	2	5	0	0.00			
FCGR3A	2214	broad.mit.edu	37	1	161518226	161518226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FCGR3A	NM_000569	exon3	c.C412A	p.L138I	CTTCTAGCTGCAC		629	7	0.01	480	4	0.0083333333		38		14	0	0.00			
FCRLB	127943	broad.mit.edu	37	1	161697415	161697415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FCRLB	NM_001002901	exon6	c.G1244T	p.S415I	CTGTGAGCCCGGG		276	4	0.01	179	1	0.0055865922		35		1	0	0.00			
PBX1	5087	broad.mit.edu	37	1	164815847	164815847	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PBX1	NM_002585	exon9	c.1227delT	p.T409fs	TGCTACTACCCCT		252	7	0.03	146	0	0		60		143	0	0.00			
KLHL20	27252	broad.mit.edu	37	1	173743459	173743459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KLHL20	NM_014458	exon9	c.G1311T	p.E437D	GAAGGAGAACAAG		172	3	0.02	120	0	0		54		13	0	0.00			
RABGAP1L	9910	broad.mit.edu	37	1	174516980	174516980	+	Missense_Mutation	SNP	G	G	T	rs190670221	by1000genomes	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RABGAP1L	.	.	.	.	GCAACAGATGAAA		229	5	0.02	147	1	0.0068027211		103		0	0				
ASTN1	460	broad.mit.edu	37	1	176852036	176852036	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ASTN1	NM_207108	exon20	c.C3321A	p.I1107I	CAGAGAGATGGTG		246	4	0.02	161	0	0		314		7	0	0.00			
RASAL2	9462	broad.mit.edu	37	1	178426900	178426900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RASAL2	NM_170692	exon14	c.G2473T	p.A825S	CAGCAAGCCTCCT		191	4	0.02	163	0	0		334		17	0	0.00			
NPHS2	7827	broad.mit.edu	37	1	179533849	179533849	+	Silent	SNP	A	A	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NPHS2	NM_014625	exon2	c.T354C	p.P118P	GGAAAAAGGGAAG		238	9	0.04	171	0	0		46		0	0				
CEP350	9857	broad.mit.edu	37	1	180063647	180063648	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CEP350	NM_014810	exon34	c.8407_8408insA	p.Q2803fs	CTATCCCAAAATG		369	6	0.02	256	0	0		418		16	0	0.00			
CEP350	9857	broad.mit.edu	37	1	180068046	180068046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CEP350	NM_014810	exon37	c.C9115T	p.P3039S	AAGGAGCCAAACC		318	4	0.01	231	1	0.0043290043		418		25	0	0.00			
LHX4	89884	broad.mit.edu	37	1	180199672	180199672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LHX4	NM_033343	exon1	c.A8G	p.Q3R	TGATGCAGAGTGC		143	4	0.03	118	0	0		36		0	0				
DHX9	1660	broad.mit.edu	37	1	182825677	182825677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DHX9	NM_001357	exon7	c.G637T	p.A213S	TTTATTGCAGAAA		202	6	0.03	110	0	0		114		68	0	0.00			
KIF21B	23046	broad.mit.edu	37	1	200948728	200948728	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KIF21B	NM_001252102	exon30	c.C4095A	p.S1365S	GGACACGGAGAAC		187	5	0.03	164	0	0		208		4	0	0.00			
CHIT1	1118	broad.mit.edu	37	1	203198779	203198779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CHIT1	.	.	.	.	TCAGCGGCAGGCT		237	4	0.02	150	0	0		61		0	0				
PLEKHA6	22874	broad.mit.edu	37	1	204192650	204192651	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PLEKHA6	NM_014935	exon22	c.3095_3096insC	p.L1032fs	GACGACAGGGGGT		248	7	0.03	216	0	0		115		2	0	0.00			
NUAK2	81788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205274386	205274386	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_030952	exon6	c.A764T	p.H255L	ATCTTATGGTCAT		97	14	0.14	72	0	0				4	0	0.00			
RASSF5	83593	mdanderson.org	37	1	206681029	206681029	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_182663	exon1	c.G94T	p.E32X	GGCCCCGAGCTAC		29	3	0.10	14	0	0				1	0	0.00			
LAMB3	3914	broad.mit.edu	37	1	209805963	209805963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LAMB3	NM_000228	exon8	c.C787A	p.P263T	CCCCAGGCTTGGG		276	5	0.02	196	1	0.0051020408		136		6	0	0.00			
GPATCH2	55105	broad.mit.edu	37	1	217604630	217604630	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	GPATCH2,NS,carcinoma,0,1	GPATCH2	NM_018040	exon10	c.C1444A	p.P482T	ACCCAGGCGTCCA		296	4	0.01	197	0	0		53	1	13	0	0.00			
HLX	3142	broad.mit.edu	37	1	221054601	221054602	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	HLX	NM_021958	exon2	c.658_659insC	p.A220fs	CCCTCGGCCGGCC		271	8	0.03	175	0	0		67		5	0	0.00			
HLX	3142	broad.mit.edu	37	1	221057861	221057861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	HLX	NM_021958	exon4	c.G1282A	p.G428S	AGCAGCGGCGGCG		88	3	0.03	73	1	0.0136986301		67		12	0	0.00			
DNAH14	127602	broad.mit.edu	37	1	225492761	225492761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DNAH14	NM_001373	exon56	c.G8696T	p.R2899M	TTTTGAGGGCACG		589	4	0.01	385	0	0		300		0	0				
ZNF678	339500	broad.mit.edu	37	1	227842069	227842069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZNF678	NM_178549	exon4	c.C283T	p.P95S	CTTTTGCCAGAGC		311	5	0.02	233	0	0		137		3	0	0.00			
ARF1	375	broad.mit.edu	37	1	228285565	228285565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ARF1	NM_001024228	exon5	c.G397T	p.A133S	CCCAACGCCATGA		301	3	0.01	232	0	0		24		1082	0	0.00			
OBSCN	84033	broad.mit.edu	37	1	228529821	228529821	+	Splice_Site	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	OBSCN	NM_001271223	exon86	c.G20907T	p.R6969R	CTCAGGGCCCCCG		210	3	0.01	128	0	0		2142		15	0	0.00			
ACTA1	58	broad.mit.edu	37	1	229568835	229568835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ACTA1	NM_001100	exon2	c.C28A	p.L10I	ACACGAGGGCGGT		298	3	0.01	193	1	0.0051813472		65		34	0	0.00			
C1orf198	84886	broad.mit.edu	37	1	230979534	230979534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	C1orf198	NM_032800	exon3	c.C493A	p.L165I	ACTTGAGGGCCTG		128	4	0.03	91	0	0		29		19	0	0.00			
LYST	1130	broad.mit.edu	37	1	235922556	235922556	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LYST	NM_000081	exon23	c.G6597A	p.V2199V	TTTGACCACTGGA		259	3	0.01	170	1	0.0058823529		370		0	0				
ADSS	159	broad.mit.edu	37	1	244615013	244615013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ADSS	NM_001126	exon1	c.C107A	p.A36E	CACTGCGCACCGA		220	4	0.02	117	0	0		49		54	0	0.00			
LARP4B	23185	broad.mit.edu;bcgsc.ca	37	10	871022	871031	+	Frame_Shift_Del	DEL	AGGAGAGGAT	AGGAGAGGAT	-	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	AGGAGAGGAT	AGGAGAGGAT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LARP4B	NM_015155	exon13	c.1458_1467del	p.486_489del	TAAACCAGGAGAG		37	10	0.27	56	0	0		110		15	0	0.00			
LARP4B	23185	hgsc.bcm.edu;bcgsc.ca	37	10	871042	871045	+	Frame_Shift_Del	DEL	CTGG	CTGG	-	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	CTGG	CTGG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LARP4B	NM_015155	exon13	c.1445_1448del	p.482_483del	GACTGCCTGGCTC		53	19	0.36	68	0	0		110		6	0	0.00			
MASTL	84930	broad.mit.edu	37	10	27475370	27475370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MASTL	NM_001172303	exon12	c.C2545T	p.P849S	ACTATGCCTTTCA		182	5	0.03	191	0	0		81		89	0	0.00			
SVIL	6840	broad.mit.edu	37	10	29754613	29754613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SVIL	NM_021738	exon34	c.C6044A	p.A2015D	TCTGTGGCTGCAA		329	3	0.01	358	2	0.0055865922		226		23	0	0.00			
SVIL	6840	broad.mit.edu	37	10	29812745	29812745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SVIL	NM_021738	exon15	c.C2798A	p.P933H	ACCAAAGGCTGCC		137	5	0.04	182	0	0		226		3	0	0.00			
SVIL	6840	hgsc.bcm.edu	37	10	29813507	29813508	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SVIL	NM_021738	exon14	c.2480_2481insC	p.Q827fs	ACTGGCTGGGACA		171	10	0.06	167	0	0		226		1	0	0.00			
ANXA8L2	244	broad.mit.edu	37	10	47756087	47756087	+	Missense_Mutation	SNP	G	G	A	rs138417320		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ANXA8L2	NM_001630	exon7	c.G547A	p.A183T	CAAGACGCACAGG		852	11	0.01	815	5	0.0061349693		8		2	0	0.00			
PCDH15	65217	broad.mit.edu	37	10	55568542	55568542	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PCDH15	.	.	.	.	CTGATAGCCCCAT		190	3	0.02	232	3	0.0129310345		1715		0	0				
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61815643	61815643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_020987	exon42	c.A12838G	p.K4280E	TTTCCTTGGTACT		120	63	0.53	143	0	0				14	7	0.50			
DLG5	9231	mdanderson.org	37	10	79613279	79613279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_004747	exon5	c.C697A	p.L233I	TCAGGAGCCGGCT		21	2	0.10	24	0	0				0	0				
PLCE1	51196	broad.mit.edu	37	10	95791638	95791638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PLCE1	NM_016341	exon2	c.G835T	p.G279C	TATTCAGGTGATA		225	5	0.02	230	2	0.0086956522		543		0	0				
PDLIM1	9124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	96997861	96997861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_020992	exon7	c.T811C	p.F271L	TCACAAACACACC		66	31	0.47	74	0	0				421	180	0.43			
PGAM1	5223	broad.mit.edu	37	10	99186071	99186071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PGAM1	NM_002629	exon1	c.G7T	p.A3S	ATGGCCGCCTACA		240	5	0.02	216	2	0.0092592593		11		564	3	0.01			
ANKRD2	26287	broad.mit.edu	37	10	99343382	99343382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ANKRD2	NM_020349	exon9	c.G983T	p.R328L	ATACCCGGCACGC		218	7	0.03	200	0	0		27		8	0	0.00			
CUEDC2	79004	broad.mit.edu	37	10	104183205	104183205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CUEDC2	NM_024040	exon9	c.C842A	p.A281D	TTTCTGGCTGGCT		239	6	0.03	231	1	0.0043290043		22		183	0	0.00			
CCKBR	887	broad.mit.edu	37	11	6291057	6291057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CCKBR	NM_176875	exon2	c.G310T	p.A104S	CTGCTGGCTGTGG		147	5	0.03	157	1	0.0063694268		232		9	0	0.00			
MICAL2	9645	broad.mit.edu	37	11	12263797	12263797	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MICAL2	NM_014632	exon19	c.G2374T	p.E792X	CTCAGAGAGCTCA		89	4	0.04	113	0	0		114		0	0				
NAV2	89797	broad.mit.edu;mdanderson.org	37	11	19914121	19914121	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	NAV2,colon,carcinoma,0,1	NAV2	NM_001244963	exon7	c.G981T	p.P327P	CCCACCGCCAAGC		94	4	0.04	100	1	0.01		255	1	1	0	0.00			
NAT10	55226	broad.mit.edu	37	11	34149080	34149080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NAT10	NM_024662	exon12	c.T1178C	p.I393T	CCGCCATCCCCCT		173	9	0.05	179	2	0.0111731844		78		43	0	0.00			
ELF5	2001	broad.mit.edu	37	11	34527231	34527231	+	Silent	SNP	C	C	T	rs368376316		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ELF5	NM_001243081	exon2	c.G96A	p.S32S	AGTCCACGACATC		137	3	0.02	160	2	0.0125		21		0	0				
FNBP4	23360	broad.mit.edu	37	11	47744591	47744591	+	Silent	SNP	A	A	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	FNBP4,NS,carcinoma,0,1	FNBP4	NM_015308	exon15	c.T2742A	p.P914P	TGGTGGAGGAGGA		57	3	0.05	66	1	0.0151515152		99	1	69	0	0.00			
PTGDR2	11251	broad.mit.edu;mdanderson.org	37	11	60620083	60620083	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_004778	exon2	c.C1113A	p.G371G	CAGCCAGCCGAGG		12	2	0.17	15	0	0				0	0				
FLRT1	23769	mdanderson.org	37	11	63884330	63884330	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_013280	exon2	c.G591T	p.P197P	GCTGCCGCACACG		38	3	0.08	32	0	0				1	0	0.00			
PYGM	5837	broad.mit.edu	37	11	64521405	64521405	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PYGM	NM_005609	exon10	c.G1185A	p.T395T	CAGCAGCGTCTCC		158	3	0.02	168	0	0		77		1	0	0.00			
TCIRG1	10312	mdanderson.org	37	11	67818094	67818094	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_006019	exon19	c.G2377T	p.G793X	ATGGAGGGACTCT		54	3	0.06	45	1	0.0222222222				59	0	0.00			
TMEM135	65084	broad.mit.edu	37	11	87006865	87006865	+	Splice_Site	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TMEM135	NM_022918	exon7	c.G551T	p.R184M	CACTTAGGTAAGA		334	9	0.03	301	2	0.0066445183		40		0	0				
BIRC2	329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	102221221	102221221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001256163	exon2	c.A636G	p.I212M	TTATATAGGACCT		133	12	0.09	121	0	0				14	3	0.21			
BIRC2	329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	102221245	102221245	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001256163	exon2	c.C660T	p.C220C	AGCCTGCTTTGCC		129	10	0.08	128	0	0				22	3	0.14			
RNF214	257160	broad.mit.edu	37	11	117105020	117105020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RNF214	NM_207343	exon2	c.C32T	p.A11V	TTGTGGCCAATGC		287	4	0.01	353	1	0.0028328612		54		13	0	0.00			
SC5D	6309	broad.mit.edu	37	11	121177795	121177795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001024956	exon5	c.G474T	p.K158N	TTGGAAGATTCCT		216	5	0.02	261	2	0.0076628352				109	0	0.00			
OR8B3	390271	broad.mit.edu	37	11	124267204	124267204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	OR8B3	NM_001005467	exon1	c.C44A	p.A15D	AATCCAGCAAGAA		146	4	0.03	167	0	0		36		0	0				
RAD52	5893	broad.mit.edu	37	12	1025813	1025813	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RAD52	NM_134424	exon8	c.C717T	p.C239C	GGAGCTGCAGTCC		249	4	0.02	88	1	0.0113636364		27		27	0	0.00			
NRIP2	83714	broad.mit.edu	37	12	2944011	2944011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NRIP2	NM_031474	exon1	c.C139A	p.P47T	CTGCTGGAGGAGT		307	4	0.01	97	1	0.0103092784		21		8	0	0.00			
VWF	7450	broad.mit.edu	37	12	6076729	6076729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	VWF,NS,NS,0,1	VWF	NM_000552	exon47	c.C7810A	p.R2604S	TGCAGCGGCAGGT		297	3	0.01	100	0	0		338	1	145	0	0.00			
CD9	928	broad.mit.edu	37	12	6344654	6344654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CD9	NM_001769	exon6	c.G460T	p.G154C	TGCTGTGGTTTGG		326	6	0.02	96	1	0.0104166667		24		4845	3	0.00			
SCNN1A	0	broad.mit.edu	37	12	6483687	6483687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SCNN1A	NM_001159576	exon1	c.C440A	p.A147E	AGCACTGCCCAGA		304	5	0.02	91	0	0		54		81	0	0.00			
IFFO1	25900	broad.mit.edu	37	12	6649685	6649685	+	Silent	SNP	G	G	T	rs201420908	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	IFFO1	NM_001193457	exon10	c.C1680A	p.S560S	GCGATCGGAGTCC		399	9	0.02	117	0	0		55		79	0	0.00			
ACRBP	84519	broad.mit.edu	37	12	6749616	6749616	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ACRBP	NM_032489	exon7	c.C1150T	p.Q384X	GGCACTGCTCCAG		313	5	0.02	102	0	0		52		2	0	0.00			
ZNF384	0	broad.mit.edu	37	12	6787518	6787518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZNF384	NM_133476	exon6	c.G461A	p.G154D	TGTGAGCCAGGGG		308	6	0.02	91	0	0		102		89	0	0.00			
A2M	2	broad.mit.edu	37	12	9248225	9248225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	A2M	NM_000014	exon16	c.C1923A	p.D641E	GATGCAGTCTTCA		535	8	0.01	170	2	0.0117647059		180		65	0	0.00			
CLEC7A	64581	broad.mit.edu	37	12	10280328	10280328	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CLEC7A	.	.	.	.	TAATCTCCTCCAC		1252	13	0.01	378	0	0		55		0	0				
PRH1-PRR4	0	hgsc.bcm.edu	37	12	11182927	11182927	+	RNA	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	GAAAAACCAGTAA		252	15	0.06	78	0	0				0	0				
PRB2	653247	broad.mit.edu	37	12	11546004	11546004	+	Silent	SNP	A	A	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PRB2	NM_006248	exon3	c.T1008A	p.P336P	ACCTTGAGGTTTG		1020	24	0.02	309	3	0.0097087379		168		0	0				
DDX47	51202	broad.mit.edu	37	12	12974319	12974319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DDX47	NM_201224	exon3	c.G359T	p.G120V	CTATTGGAGTGCA		280	4	0.01	94	0	0		37		278	0	0.00			
GSG1	83445	broad.mit.edu	37	12	13243709	13243709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GSG1	NM_001080554	exon2	c.C92A	p.S31Y	ATGGCAGATAGGA		285	5	0.02	102	0	0		62		18	0	0.00			
RERG	85004	broad.mit.edu	37	12	15264285	15264285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RERG	NM_032918	exon4	c.C185A	p.A62D	TGACCAGCAGTGT		365	4	0.01	130	0	0		30		12	0	0.00			
PDE3A	5139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	20769229	20769229	+	Silent	SNP	C	C	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_000921	exon4	c.C1335G	p.T445T	CACCACCTCGGCC		336	32	0.10	108	0	0				0	0				
ST8SIA1	6489	broad.mit.edu	37	12	22354747	22354747	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	ST8SIA1,colon,carcinoma,-1,1	ST8SIA1	NM_003034	exon5	c.C810A	p.A270A	GCGCTTGGCATGG		295	5	0.02	92	0	0		55	1	3	0	0.00			
ETNK1	55500	broad.mit.edu	37	12	22797183	22797183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ETNK1	NM_001039481	exon3	c.G722T	p.R241I	CTACAAGATGTTT		269	5	0.02	124	0	0		61		9	0	0.00			
MRPS35	60488	broad.mit.edu	37	12	27908360	27908360	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	MRPS35,NS,carcinoma,-1,1	MRPS35	NM_021821	exon8	c.949delA	p.K317fs	TCCGTGAAGAGAC		706	9	0.01	248	0	0		26	1	610	0	0.00			
TMTC1	83857	broad.mit.edu	37	12	29659824	29659825	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TMTC1	NM_001193451	exon18	c.2604_2605insG	p.R868fs	TTCTAGGCGATCC		488	7	0.01	170	0	0		147		40	0	0.00			
KIAA1551	55196	broad.mit.edu	37	12	32135426	32135426	+	Missense_Mutation	SNP	C	C	T	rs146592039		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	C12orf35,NS,carcinoma,0,1	.	NM_018169	exon4	c.C1537T	p.R513W	GAAAAGCGGCCAA		346	5	0.01	104	0	0			1	103	0	0.00			
DNM1L	10059	broad.mit.edu	37	12	32861095	32861095	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DNM1L	NM_012062	exon4	c.G306T	p.T102T	TTACACGGATTTT		823	7	0.01	280	0	0		52		30	0	0.00			
FAM186A	121006	broad.mit.edu	37	12	50746140	50746140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FAM186A	NM_001145475	exon4	c.G4475A	p.G1492E	GGGATCCCCAATT		305	10	0.03	203	1	0.0049261084		181		0	0				
FAM186A	121006	broad.mit.edu	37	12	50748100	50748100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FAM186A	NM_001145475	exon4	c.C2515A	p.L839I	GTTTGAGACTCAT		207	3	0.01	143	0	0		181		0	0				
FAM186A	121006	broad.mit.edu	37	12	50754652	50754652	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	FAM186A_ENST00000327337,colon,carcinoma,-1,1	FAM186A	NM_001145475	exon3	c.C470A	p.A157E	ATTTGTGCTATCC		316	8	0.03	207	3	0.0144927536		181	1	0	0				
BIN2	51411	broad.mit.edu	37	12	51675288	51675288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	BIN2	NM_016293	exon13	c.C1693A	p.L565I	TTCAGAGTTGTGG		228	6	0.03	162	2	0.012345679		58		73	0	0.00			
SLC4A8	9498	broad.mit.edu	37	12	51888759	51888759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	SLC4A8,NS,carcinoma,-2,1	SLC4A8	NM_001039960	exon21	c.C2800T	p.P934S	GGGATGCCCGCAA		298	4	0.01	215	0	0		292	1	8	0	0.00			
ESPL1	9700	broad.mit.edu	37	12	53685533	53685533	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ESPL1	NM_012291	exon26	c.G5580T	p.G1860G	CTACGGGCTGTGC		295	3	0.01	178	1	0.0056179775		158		89	0	0.00			
AAAS	8086	broad.mit.edu	37	12	53714409	53714409	+	Missense_Mutation	SNP	C	C	T	rs151099565	by1000genomes	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	AAAS	NM_015665	exon2	c.G191A	p.G64D	CTTGTGCCATGGT		246	6	0.02	160	1	0.00625		46		132	0	0.00			
CALCOCO1	57658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54117502	54117502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_020898	exon4	c.G325A	p.V109M	CACACACCTGGCC		198	36	0.18	141	0	0				14	7	0.50			
HOXC11	3227	broad.mit.edu	37	12	54367267	54367267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	HOXC11	NM_014212	exon1	c.G242T	p.G81V	CATCCGGCAAGTG		182	3	0.02	114	1	0.0087719298		32		0	0				
RDH5	5959	broad.mit.edu	37	12	56115041	56115041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RDH5	NM_001199771	exon2	c.C73T	p.P25S	AGCCTGCCCGCCA		329	7	0.02	248	1	0.0040322581		25		1	0	0.00			
ERBB3	2065	broad.mit.edu	37	12	56491695	56491695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ERBB3	NM_001982	exon21	c.G2587T	p.D863Y	CCTGATGATAAGC		149	3	0.02	72	0	0		350		32	0	0.00			
ZC3H10	84872	mdanderson.org	37	12	56514350	56514350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_032786	exon3	c.C4T	p.P2S	AGGATGCCTGACC		33	3	0.09	34	1	0.0294117647				22	0	0.00			
BAZ2A	11176	broad.mit.edu	37	12	57000452	57000452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	BAZ2A	NM_013449	exon11	c.C2164A	p.Q722K	CCCGTTGAACCTT		229	5	0.02	163	0	0		263		4	0	0.00			
USP15	9958	broad.mit.edu	37	12	62783665	62783666	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	USP15	NM_001252078	exon14	c.1741_1742insC	p.T581fs	AGTTATACCCACC		178	6	0.03	129	0	0		105		21	0	0.00			
OSBPL8	114882	broad.mit.edu	37	12	76780378	76780378	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	OSBPL8	NM_020841	exon13	c.1415delG	p.G472fs	TAGAATCCTGACA		658	7	0.01	444	0	0		86		7	0	0.00			
POC1B	282809	broad.mit.edu	37	12	89860639	89860639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	POC1B,NS,carcinoma,+2,1	POC1B	NM_172240	exon9	c.C940A	p.L314I	TTTTGAGATTTCT		287	5	0.02	200	0	0		41	1	9	0	0.00			
SCYL2	55681	broad.mit.edu	37	12	100711674	100711674	+	Missense_Mutation	SNP	G	G	T	rs369328887	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SCYL2	NM_017988	exon10	c.G1366T	p.A456S	TACAGAGCACTAG		263	3	0.01	213	1	0.0046948357		99		9	0	0.00			
ANO4	121601	broad.mit.edu	37	12	101477466	101477466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	ANO4,NS,carcinoma,0,1	ANO4	NM_178826	exon15	c.G1301T	p.R434L	AAATACGACCCCA		156	3	0.02	127	0	0		183	1	0	0				
MYBPC1	4604	broad.mit.edu	37	12	102053522	102053522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MYBPC1	NM_206819	exon19	c.G1840T	p.A614S	GATATAGCTGAAA		192	5	0.03	148	1	0.0067567568		235		0	0				
GIT2	9815	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	110376285	110376285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_057169	exon18	c.C1903A	p.P635T	GAGTGGGGCTTGG		197	12	0.06	162	0	0				24	2	0.08			
IFT81	28981	broad.mit.edu	37	12	110565264	110565264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	IFT81	NM_014055	exon2	c.G79T	p.D27Y	ACGTTTGATTCCT		374	7	0.02	263	2	0.0076045627		86		10	0	0.00			
HRK	8739	broad.mit.edu	37	12	117318878	117318878	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	HRK	NM_003806	exon1	c.G235T	p.A79S	GCGCCGCCACCTG		11	2	0.18	12	0	0		1		9	0	0.00			
KNTC1	9735	broad.mit.edu	37	12	123087235	123087235	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KNTC1	NM_014708	exon46	c.G4773T	p.L1591L	TAGACTGCCTTTT		251	7	0.03	195	0	0		182		46	0	0.00			
UBC	7316	broad.mit.edu	37	12	125398024	125398024	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	UBC,colon,carcinoma,0,2	UBC	NM_021009	exon2	c.C294T	p.T98T	CTCGATGGTGTCA		349	5	0.01	199	0	0		79	2	1355	0	0.00			
GOLGA3	2802	broad.mit.edu	37	12	133351804	133351804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GOLGA3	NM_005895	exon22	c.C4066A	p.L1356M	TCTTCAGCTCCGA		139	5	0.04	110	1	0.0090909091		234		26	0	0.00			
CENPJ	55835	hgsc.bcm.edu;broad.mit.edu	37	13	25480948	25480948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_018451	exon7	c.C1228A	p.Q410K	GCGGCTGGTCCTC		111	6	0.05	122	0	0				3	0	0.00			
FLT3	2322	broad.mit.edu	37	13	28578254	28578254	+	Nonsense_Mutation	SNP	G	G	A	rs191501493	bycluster;by1000genomes	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	FLT3,colon,carcinoma,0,1	FLT3	NM_004119	exon24	c.C2917T	p.R973X	AAGGTCGCCTGTT		115	3	0.03	121	0	0		15525	1	3	0	0.00			
KPNA3	3839	broad.mit.edu	37	13	50306542	50306543	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KPNA3	NM_002267	exon6	c.348_349insT	p.L116fs	AATTGGTAAAATC		399	9	0.02	451	0	0		53		8	0	0.00			
SLC15A1	6564	broad.mit.edu	37	13	99371514	99371514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLC15A1	NM_005073	exon8	c.C617A	p.A206D	AGAGCAGCAGGAA		112	3	0.03	104	0	0		92		2	0	0.00			
GRK1	6011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	114325882	114325882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_002929	exon3	c.C896T	p.A299V	ACACGGCGCAGAT		25	8	0.32	30	0	0				0	0				
RPGRIP1	57096	broad.mit.edu	37	14	21756201	21756201	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RPGRIP1	NM_020366	exon1	c.G66T	p.L22L	ACCTCTGGTGCTA		173	6	0.03	170	3	0.0176470588		213		0	0				
PSME2	5721	mdanderson.org	37	14	24612871	24612871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	PSME2,NS,carcinoma,0,3	PSME2	NM_002818	exon10	c.C562T	p.R188W	AGGCCCGGTAATC		58	3	0.05	53	0	0		0	3	643	1	0.00			
ADCY4	196883	broad.mit.edu	37	14	24795332	24795332	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ADCY4	NM_001198592	exon13	c.C1608T	p.T536T	ATCCCCGGTGTCC		114	5	0.04	124	0	0		86		2	0	0.00			
OTX2	5015	mdanderson.org	37	14	57268936	57268936	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001270525	exon3	c.C411A	p.G137G	GAATTGGCCACTT		59	3	0.05	58	0	0				25	0	0.00			
YLPM1	56252	broad.mit.edu	37	14	75295965	75295965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	YLPM1	NM_019589	exon19	c.G6213T	p.E2071D	CTGGGAGGCCATT		231	5	0.02	211	0	0		298		133	0	0.00			
TECPR2	9895	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	102904488	102904488	+	Missense_Mutation	SNP	C	C	G	rs368111236	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001172631	exon10	c.C2524G	p.L842V	GCCGGGCTGCGCT		61	4	0.07	60	0	0				8	1	0.13			
AHNAK2	113146	broad.mit.edu	37	14	105413995	105413995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	AHNAK2	NM_138420	exon7	c.C7793A	p.P2598H	GCCTTGGGGCCTT		237	4	0.02	210	1	0.0047619048		719		0	0				
.	0	bcgsc.ca	37	15	20433934	20433934	+	RNA	SNP	G	G	A	rs181123873	by1000genomes	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	ACCTGAGGCCGTG		179	29	0.16	322	30	0.0931677019				3	0	0.00			
OR4N3P	390539	bcgsc.ca	37	15	22413817	22413817	+	RNA	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	TGATGGCCTTTGA		168	10	0.06	338	2	0.0059171598				0	0				
PLA2G4F	255189	mdanderson.org	37	15	42439368	42439368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_213600	exon13	c.T1373C	p.L458P	TCGATGAGGGACA		52	3	0.06	59	0	0				0	0				
CAPN3	825	broad.mit.edu	37	15	42703172	42703172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CAPN3	NM_000070	exon22	c.G2354T	p.C785F	TCTGCTGCTTCGT		66	5	0.08	70	0	0		172		9	0	0.00			
SEMA6D	80031	broad.mit.edu	37	15	48058773	48058773	+	Splice_Site	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SEMA6D	NM_001198999	exon19	c.1647-1G>T	.	TATGAAGGCTGTT		102	4	0.04	150	0	0		322		0	0				
DMXL2	23312	mdanderson.org	37	15	51791559	51791559	+	Missense_Mutation	SNP	A	A	T	rs12102203	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	DMXL2,NS,carcinoma,0,1	DMXL2	NM_001174116	exon18	c.T3862A	p.S1288T	CATTAGAACTATC		84	3	0.04	118	0	0		0	1	0	0				
DYX1C1-CCPG1	100533483	hgsc.bcm.edu	37	15	55657628	55657628	+	RNA	SNP	T	T	G	rs200853518	bycluster	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	TTTTTTTTGTTTT		61	14	0.23	55	0	0				0	0				
ZNF280D	54816	broad.mit.edu	37	15	56981569	56981569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZNF280D	NM_017661	exon8	c.C599A	p.A200E	GAATTTGCTCCAG		193	5	0.03	211	1	0.0047393365		82		1	0	0.00			
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	62212292	62212292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_020821	exon57	c.A7451G	p.E2484G	GAGCTTTCTTGAC		157	15	0.10	178	0	0				1	1	1.00			
ZNF609	23060	broad.mit.edu	37	15	64791875	64791875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZNF609	NM_015042	exon1	c.G257T	p.G86V	AGGAAGGCAAATC		223	3	0.01	239	0	0		106		1	0	0.00			
KBTBD13	390594	broad.mit.edu	37	15	65370090	65370090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	KBTBD13,NS,carcinoma,0,1	KBTBD13	NM_001101362	exon1	c.C937T	p.R313W	CTGTGGCGGCCGG		25	2	0.08	32	0	0		9	1	0	0				
IDH3A	3419	mdanderson.org	37	15	78453923	78453923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_005530	exon5	c.G290T	p.G97V	TAACAGGCCCTTT		43	4	0.09	46	0	0				34	0	0.00			
RASGRF1	5923	broad.mit.edu	37	15	79382723	79382723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RASGRF1	NM_001145648	exon1	c.C118A	p.Q40K	TGGTTTGCCATTT		42	4	0.10	48	1	0.0208333333		168		0	0				
AKAP13	11214	broad.mit.edu	37	15	86266551	86266551	+	Splice_Site	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	AKAP13	NM_006738	exon26	c.G6757T	p.E2253X	TTGAAAGGTAAGG		106	4	0.04	117	2	0.0170940171		394		2	0	0.00			
CHTF18	63922	mdanderson.org	37	16	839620	839620	+	Missense_Mutation	SNP	C	C	T	rs373908849		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_022092	exon4	c.C511T	p.P171S	AGGCGGCCCCCCA		32	3	0.09	31	0	0				55	0	0.00			
UBE2I	7329	broad.mit.edu	37	16	1370230	1370230	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	UBE2I	NM_003345	exon5	c.C279T	p.C93C	AGTGTGCCTGTCC		123	4	0.03	97	0	0		15		1001	1	0.00			
CCDC154	645811	mdanderson.org	37	16	1484837	1484837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001143980	exon16	c.C1709A	p.A570D	AGGGTGGCCATCT		35	3	0.09	23	0	0				3	0	0.00			
MAPK8IP3	23162	mdanderson.org	37	16	1816287	1816287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_015133	exon22	c.C2693T	p.A898V	CAGAGGCCACGGA		57	3	0.05	57	0	0				11	0	0.00			
PKD1	5310	hgsc.bcm.edu	37	16	2164211	2164211	+	Missense_Mutation	SNP	G	G	A	rs74488735		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	PKD1,NS,haematopoietic_neoplasm,0,4	PKD1	NM_000296	exon11	c.C2813T	p.T938M	CTGGGCGTGGCGC		33	6	0.18	36	1	0.0277777778		0	4	0	0				
SLX4	84464	broad.mit.edu	37	16	3656574	3656574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLX4	NM_032444	exon3	c.C661A	p.P221T	GCTCGGGGTCTGC		209	3	0.01	233	0	0		173		2	0	0.00			
CORO7	79585	mdanderson.org	37	16	4414863	4414863	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_024535	exon12	c.G957A	p.A319A	GGCCAGCGCCTGC		45	3	0.07	27	0	0				19	0	0.00			
CIITA	4261	mdanderson.org	37	16	10989249	10989249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_000246	exon2	c.G163T	p.D55Y	CAGATGGACCTGG		59	3	0.05	53	0	0				0	0				
ACSM2A	123876	broad.mit.edu	37	16	20477039	20477039	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ACSM2A	NM_001010845	exon4	c.C378T	p.C126C	GGGCTGCATTCGA		290	4	0.01	330	3	0.0090909091		120		0	0				
CRYM	1428	broad.mit.edu	37	16	21272608	21272608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CRYM	NM_001888	exon9	c.C847A	p.H283N	CACAGTGGGCTGG		138	4	0.03	132	0	0		13		190	1	0.01			
PALB2	79728	broad.mit.edu	37	16	23641321	23641321	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PALB2	NM_024675	exon5	c.G2154T	p.R718S	GGTAGGCCTGTCA		129	5	0.04	125	4	0.032		108		8	0	0.00			
SULT1A2	6799	broad.mit.edu	37	16	28604855	28604855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SULT1A2	NM_001054	exon5	c.C407A	p.A136E	GAAACCGCCACAT		162	4	0.02	161	0	0		27		3	0	0.00			
ASPHD1	253982	mdanderson.org	37	16	29913203	29913203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_181718	exon1	c.G911A	p.R304H	AGGGCCGCTGTGG		49	3	0.06	58	0	0				42	1	0.02			
PRSS53	339105	broad.mit.edu	37	16	31097418	31097418	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PRSS53	NM_001039503	exon6	c.C750A	p.A250A	CTCCTGGGCACAG		69	4	0.06	54	0	0		29		4	0	0.00			
PRSS36	146547	broad.mit.edu	37	16	31154780	31154780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PRSS36	NM_001258291	exon8	c.C983A	p.A328D	CGCGGGGCCTTCC		68	5	0.07	48	1	0.0208333333		50		1	0	0.00			
ABCC11	85320	broad.mit.edu	37	16	48244964	48244964	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ABCC11	NM_033151	exon10	c.G1503A	p.G501G	AGCATGCCCGTTC		133	3	0.02	125	1	0.008		177		0	0				
CHD9	80205	broad.mit.edu	37	16	53243477	53243477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CHD9	NM_025134	exon3	c.G1536T	p.K512N	GAAGAAGCAGAGA		203	3	0.01	218	0	0		203		0	0				
CDH5	1003	broad.mit.edu	37	16	66431946	66431947	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	CDH5,NS,carcinoma,+1,1	CDH5	NM_001795	exon9	c.1422_1423insA	p.D474fs	GAATGACAATGCC		210	0	0.00	143	0	0		111	1	10	0	0.00			
ELMO3	79767	broad.mit.edu	37	16	67236569	67236569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ELMO3	NM_024712	exon15	c.G1597T	p.A533S	ACTCTGGCCCTGA		172	3	0.02	164	0	0		41		29	0	0.00			
RLTPR	146206	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	67683478	67683478	+	Silent	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001013838	exon20	c.C1875A	p.G625G	CGCGGGCGCCAAG		19	9	0.47	18	0	0				11	3	0.27			
EDC4	23644	mdanderson.org	37	16	67913787	67913787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_014329	exon16	c.G1856T	p.S619I	GCGGTAGCAGCAG		59	5	0.08	56	0	0				38	0	0.00			
CLEC18C	283971	broad.mit.edu	37	16	70211324	70211324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CLEC18C	NM_173619	exon3	c.C397T	p.R133W	GGGCAGCGGTACA		324	4	0.01	327	0	0		15		2	0	0.00			
PKD1L3	342372	broad.mit.edu	37	16	72033512	72033513	+	RNA	INS	-	-	T	rs377409889		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PKD1L3	.	.	.	.	GATTTTCTTTTTT		57	9	0.16	46	0	0		67		0	0				
HPR	3250	broad.mit.edu	37	16	72110394	72110394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	HPR_ENST00000228226,NS,carcinoma,0,2	HPR	NM_020995	exon5	c.C461T	p.A154V	AAAATGCAACAGC		364	5	0.01	383	1	0.0026109661		43	2	0	0				
CHST5	23563	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	75563911	75563911	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_024533	exon3	c.C372A	p.C124X	CATGTCGCACAAA		116	9	0.08	109	0	0				0	0				
PKD1L2	114780	broad.mit.edu	37	16	81204552	81204552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PKD1L2	NM_001076780	exon17	c.C2906A	p.A969D	ACCTGGGCCGAGG		100	3	0.03	107	0	0		361		0	0				
FAM92B	339145	mdanderson.org	37	16	85139014	85139014	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_198491	exon5	c.C456A	p.A152A	CACAGCGGCCCTC		40	3	0.08	48	0	0				0	0				
INPP5K	51763	broad.mit.edu	37	17	1410277	1410277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	INPP5K	NM_016532	exon7	c.C773A	p.T258N	CACCTGGTGTCAT		196	4	0.02	134	0	0		30		65	0	0.00			
RILP	83547	broad.mit.edu	37	17	1549758	1549758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RILP	NM_031430	exon8	c.C1184A	p.A395D	GCTGAGGCCCCCA		169	5	0.03	120	0	0		24		41	0	0.00			
OR1D4	653166	broad.mit.edu	37	17	3144185	3144185	+	RNA	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	CCTCTTCTTTGTC		472	4	0.01	356	0	0				0	0				
ZZEF1	23140	broad.mit.edu	37	17	3975931	3975931	+	Missense_Mutation	SNP	G	G	A	rs370550753	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZZEF1	NM_015113	exon25	c.C3805T	p.P1269S	GAGTGGGCCAGCT		214	4	0.02	181	0	0		195		1	0	0.00			
ARRB2	409	broad.mit.edu	37	17	4619841	4619841	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ARRB2	NM_001257329	exon5	c.A295C	p.T99P	CCCCCCACCCGCC		66	21	0.32	46	14	0.3043478261		30		36	2	0.06			
ZMYND15	84225	broad.mit.edu	37	17	4645281	4645281	+	Missense_Mutation	SNP	G	G	A	rs143837890	bycluster;byfrequency;by1000genomes	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZMYND15	NM_001136046	exon4	c.G899A	p.R300Q	GTCCCCGGCCAGG		328	4	0.01	221	0	0		87		0	0				
ENO3	2027	broad.mit.edu	37	17	4858517	4858517	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ENO3	NM_001976	exon7	c.G592T	p.A198S	ATCAAGGCCAAGT		232	5	0.02	152	0	0		36		46	0	0.00			
NLRP1	22861	broad.mit.edu	37	17	5461937	5461937	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NLRP1	NM_033007	exon4	c.G2079A	p.R693R	AGACAGCCGGCAG		156	3	0.02	132	1	0.0075757576		358		0	0				
TEKT1	83659	broad.mit.edu	37	17	6733661	6733662	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TEKT1	NM_053285	exon2	c.35_36insC	p.L12fs	GAGGGCAGGAACT		448	8	0.02	287	0	0		49		0	0				
DLG4	1742	broad.mit.edu	37	17	7097791	7097791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DLG4	NM_001365	exon14	c.C1454A	p.T485N	TCCTTGGTCTTGT		203	5	0.02	130	2	0.0153846154		110		11	0	0.00			
ACADVL	37	broad.mit.edu	37	17	7126059	7126059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ACADVL	NM_001270447	exon11	c.C1021T	p.P341S	CGGGTGCCATCGG		169	3	0.02	119	1	0.0084033613		43		364	0	0.00			
EIF5A	1984	broad.mit.edu	37	17	7214926	7214926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	EIF5A	NM_001143760	exon5	c.G522T	p.E174D	AGAGGAGGCAGCT		223	3	0.01	170	0	0		28		5067	0	0.00			
SHBG	6462	broad.mit.edu	37	17	7533538	7533538	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SHBG	NM_001040	exon1	c.G48T	p.L16L	GTTGCTGCTGTTG		105	4	0.04	64	0	0		21		0	0				
KRBA2	124751	broad.mit.edu	37	17	8272513	8272513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KRBA2	NM_213597	exon2	c.C1418A	p.P473H	GGAGTGGGATCCA		256	6	0.02	158	0	0		34		6	0	0.00			
GAS7	8522	mdanderson.org	37	17	10101685	10101685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_201433	exon1	c.C23A	p.T8N	TACAGGGTCCGGC		17	2	0.12	10	0	0				11	0	0.00			
MYH3	4621	broad.mit.edu	37	17	10545596	10545597	+	Frame_Shift_Ins	INS	-	-	CC	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MYH3	NM_002470	exon17	c.1920_1921insGG	p.K640fs	ACCCTTCTTCTTG		848	4	0.00	571	0	0		227		2	0	0.00			
DNAH9	1770	broad.mit.edu	37	17	11648286	11648286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DNAH9	NM_001372	exon31	c.G6284A	p.G2095E	TGATCGGGGACCT		236	3	0.01	173	0	0		695		0	0				
COX10	1352	broad.mit.edu	37	17	14095488	14095488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	COX10	NM_001303	exon6	c.C878T	p.A293V	TTGGGGCCATCCC		318	4	0.01	262	0	0		36		21	0	0.00			
TTC19	54902	broad.mit.edu	37	17	15930740	15930740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TTC19	NM_017775	exon10	c.G1047T	p.K349N	AGCAAAGCTGAAA		241	7	0.03	148	0	0		10		177	0	0.00			
UBB	7314	broad.mit.edu	37	17	16285329	16285330	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	UBB	NM_018955	exon2	c.108_109insC	p.I36fs	AGGCATTCCCCCC		208	6	0.03	125	0	0		30		5465	0	0.00			
FLII	2314	broad.mit.edu	37	17	18155412	18155412	+	Missense_Mutation	SNP	C	C	T	rs377757631		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	FLII,right_upper_lobe,carcinoma,+1,1	FLII	NM_002018	exon11	c.G1147A	p.A383T	GGTCTGCGGGCTT		209	4	0.02	140	1	0.0071428571		79	1	86	0	0.00			
SARM1	23098	broad.mit.edu	37	17	26712058	26712058	+	Splice_Site	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SARM1	NM_015077	exon6	c.1392-1G>T	.	GGTGCAGGTTCTT		288	6	0.02	173	0	0		40		0	0				
KIAA0100	9703	broad.mit.edu	37	17	26964021	26964021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KIAA0100	NM_014680	exon15	c.C1939A	p.L647I	TGGAGAGCATGGA		238	3	0.01	162	0	0		175		13	0	0.00			
CPD	1362	broad.mit.edu	37	17	28754503	28754503	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CPD	NM_001304	exon7	c.G1944T	p.T648T	TCCTACGCAACCA		234	4	0.02	163	2	0.0122699387		89		6	0	0.00			
LRRC37BP1	0	broad.mit.edu	37	17	28961033	28961033	+	RNA	SNP	T	T	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	CCAGGATATGACT		211	3	0.01	135	0	0				57	0	0.00			
NF1	4763	broad.mit.edu	37	17	29664506	29664506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NF1	NM_001042492	exon43	c.G6548T	p.R2183L	GTTACCGGGACAG		228	4	0.02	133	0	0		1586		6	0	0.00			
CDK5R1	8851	broad.mit.edu	37	17	30815393	30815393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CDK5R1	NM_003885	exon2	c.G755T	p.S252I	TGGAGAGCTGCAA		277	5	0.02	223	0	0		30		4	0	0.00			
SLC35G3	146861	broad.mit.edu	37	17	33521163	33521163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_152462	exon1	c.G164A	p.G55D	AGGGGGCCCACGA		141	3	0.02	82	0	0				0	0				
KRT24	192666	broad.mit.edu	37	17	38854821	38854821	+	Silent	SNP	T	T	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KRT24	NM_019016	exon7	c.A1443G	p.S481S	AGATCTTGAGTCA		510	6	0.01	317	1	0.0031545741		60		0	0				
KRT15	3866	broad.mit.edu	37	17	39673161	39673161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KRT15	NM_002275	exon3	c.C637A	p.R213S	CTCGGCGCAAGCC		77	3	0.04	63	1	0.0158730159		60		9	0	0.00			
HAP1	9001	broad.mit.edu	37	17	39888331	39888331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	HAP1	NM_001079870	exon4	c.C778A	p.L260I	GGAGGAGCTCATC		161	4	0.02	109	0	0		48		1	0	0.00			
GHDC	84514	broad.mit.edu	37	17	40342275	40342275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GHDC	NM_001142623	exon9	c.C1391A	p.A464D	AGCAGAGCCCGCA		212	3	0.01	143	0	0		63		27	0	0.00			
C17orf53	78995	broad.mit.edu	37	17	42226163	42226163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	C17orf53	NM_001171251	exon3	c.G992T	p.S331I	GGACTAGCTCTGG		261	9	0.03	161	1	0.0062111801		59		40	0	0.00			
GRN	2896	broad.mit.edu	37	17	42427035	42427035	+	Splice_Site	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GRN	NM_002087	exon4	c.G265T	p.A89S	CCACAGGCCGTGG		231	4	0.02	130	0	0		51		226	0	0.00			
HEXIM1	10614	broad.mit.edu	37	17	43227331	43227331	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	HEXIM1	NM_006460	exon1	c.C774T	p.D258D	AGGGGACGGCAGC		207	3	0.01	156	0	0		25		29	0	0.00			
WNT9B	7484	broad.mit.edu	37	17	44953813	44953813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	WNT9B	NM_003396	exon4	c.G803A	p.G268D	GGCAGGGCAGCCT		205	4	0.02	118	1	0.0084745763		37		0	0				
NGFR	4804	broad.mit.edu	37	17	47590258	47590258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NGFR	NM_002507	exon6	c.G1171T	p.A391S	AGCTGGGCCACCC		151	6	0.04	93	2	0.0215053763		46		32	0	0.00			
SLC35B1	10237	broad.mit.edu	37	17	47780277	47780277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLC35B1	NM_005827	exon8	c.C859A	p.L287I	CGAAGAGGATCAC		234	4	0.02	154	0	0		21		813	0	0.00			
DLX3	1747	hgsc.bcm.edu	37	17	48069062	48069063	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DLX3	NM_005220	exon3	c.683_684insC	p.R228fs	TGACTGCGGGCAG		127	8	0.06	77	0	0		28		1	0	0.00			
TOB1	10140	broad.mit.edu	37	17	48941031	48941031	+	Silent	SNP	A	A	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TOB1	NM_005749	exon2	c.T348C	p.D116D	ATTATTATCATCC		274	3	0.01	216	0	0		40		52	0	0.00			
PPM1E	22843	hgsc.bcm.edu	37	17	56833454	56833454	+	Silent	SNP	G	G	A	rs77856248		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	PPM1E,colon,carcinoma,0,1	PPM1E	NM_014906	exon1	c.G96A	p.E32E	GCCGGAGCCGGAA		212	15	0.07	122	0	0		0	1	0	0				
USP32	84669	broad.mit.edu	37	17	58286906	58286906	+	Splice_Site	DEL	T	T	-	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	USP32	NM_032582	exon23	c.2425-2A>-	.	GTCCACTATAAAT		584	7	0.01	416	0	0		128		1	0	0.00			
CEP112	201134	broad.mit.edu	37	17	64026113	64026113	+	Missense_Mutation	SNP	C	C	T	rs369403378		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	CEP112_ENST00000392769,NS,carcinoma,0,2	CEP112	NM_001199165	exon13	c.G1247A	p.R416H	TGGACACGGGCCT		198	3	0.02	107	2	0.0186915888		192	2	4	0	0.00			
ABCA5	23461	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	67251698	67251698	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ABCA5	NM_018672	exon30	c.C4054G	p.P1352A	AAGTTGGTTCAAT		596	17	0.03	438	0	0		162		3	0	0.00			
SPHK1	8877	broad.mit.edu	37	17	74382929	74382929	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	SPHK1,NS,carcinoma,0,1	SPHK1	NM_182965	exon6	c.G675T	p.T225T	CTGCACGCTATTG		123	3	0.02	71	0	0		24	1	36	0	0.00			
ST6GALNAC1	55808	broad.mit.edu	37	17	74625146	74625146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ST6GALNAC1	NM_018414	exon2	c.C779A	p.P260H	CACCGAGGCTCAG		275	4	0.01	205	0	0		42		2	0	0.00			
MGAT5B	146664	broad.mit.edu	37	17	74928843	74928843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MGAT5B	NM_198955	exon10	c.G1441T	p.A481S	AAGGAGGCGAGCA		181	3	0.02	133	0	0		98		1	0	0.00			
B3GNTL1	146712	broad.mit.edu	37	17	80915311	80915311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	B3GNTL1	NM_001009905	exon9	c.C785A	p.A262E	AAGGCCGCCCAGC		178	4	0.02	113	0	0		40		4	0	0.00			
PTPRM	5797	broad.mit.edu	37	18	7774226	7774226	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	PTPRM,NS,carcinoma,+2,1	PTPRM	NM_001105244	exon2	c.G153T	p.V51V	GCAAGTGAACACC		152	4	0.03	137	0	0		185	1	2	0	0.00			
CEP192	55125	broad.mit.edu	37	18	13048962	13048962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CEP192	NM_032142	exon16	c.G2172T	p.E724D	TGCAGAGGCATCA		139	3	0.02	131	1	0.0076335878		340		2	0	0.00			
SLC14A2	8170	broad.mit.edu	37	18	43248365	43248365	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	SLC14A2,NS,carcinoma,+2,1	SLC14A2	NM_001242692	exon16	c.G1959A	p.L653L	GGGGCTGCTGATG		143	4	0.03	135	0	0		121	1	1	0	0.00			
EPG5	57724	broad.mit.edu	37	18	43464694	43464694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	EPG5	NM_020964	exon30	c.C5192A	p.S1731Y	AAAGGAGACAGCA		102	4	0.04	109	0	0		199		1	0	0.00			
EPG5	57724	broad.mit.edu	37	18	43519645	43519645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	EPG5,NS,carcinoma,+2,1	EPG5	NM_020964	exon10	c.C2020A	p.P674T	AGTAGGGCTGTTG		269	7	0.03	282	0	0		199	1	2	0	0.00			
ATP8B1	5205	broad.mit.edu	37	18	55355660	55355660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	ATP8B1,NS,carcinoma,0,2	ATP8B1	NM_005603	exon13	c.G1300A	p.A434T	CTTTTGCGGGTGT		215	5	0.02	208	1	0.0048076923		126	2	2	0	0.00			
CAMSAP3	57662	mdanderson.org	37	19	7680360	7680360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001080429	exon15	c.C2948T	p.A983V	CGATGGCGACTCC		30	3	0.10	16	0	0				24	0	0.00			
MYO1F	4542	broad.mit.edu	37	19	8609310	8609310	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MYO1F	NM_012335	exon14	c.C1395T	p.C465C	GGTGGCGCACACG		63	3	0.05	56	0	0		128		5	0	0.00			
OR2Z1	284383	broad.mit.edu	37	19	8841539	8841539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	OR2Z1,NS,carcinoma,0,1	OR2Z1	NM_001004699	exon1	c.G149A	p.R50H	TGATCCGTGTGGA		199	3	0.02	187	0	0		53	1	0	0				
MAST1	22983	broad.mit.edu	37	19	12969240	12969240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MAST1	NM_014975	exon11	c.G1142T	p.S381I	TCATAAGCAACGG		181	3	0.02	156	0	0		214		1	0	0.00			
ATP13A1	57130	mdanderson.org	37	19	19767903	19767903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_020410	exon5	c.C806A	p.T269K	GATAGCGTAAAGA		49	3	0.06	63	0	0				13	0	0.00			
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22156903	22156903	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_007153	exon4	c.G933A	p.K311K	GTAGGGCTTCTCT		115	58	0.50	95	0	0				1	0	0.00			
CCNE1	898	broad.mit.edu	37	19	30308069	30308069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CCNE1	NM_001238	exon5	c.C206T	p.A69V	TCTGTGCAGACCC		112	3	0.03	123	1	0.0081300813		49		44	0	0.00			
ACTN4	81	mdanderson.org	37	19	39191305	39191305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_004924	exon2	c.G228T	p.E76D	TGATGAGGACTTC		52	3	0.06	49	0	0				183	0	0.00			
CAPN12	147968	broad.mit.edu	37	19	39228218	39228219	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CAPN12	NM_144691	exon9	c.1026_1027insC	p.P342fs	CACCTCCGGGCTC		161	6	0.04	131	0	0		43		4	0	0.00			
SUPT5H	6829	broad.mit.edu	37	19	39965024	39965024	+	Silent	SNP	G	G	A	rs376597898		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SUPT5H	NM_003169	exon26	c.G2802A	p.P934P	TACACCGTCGCCC		244	6	0.02	213	0	0		119		491	0	0.00			
PLA2G4C	8605	broad.mit.edu	37	19	48607859	48607859	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PLA2G4C	NM_001159322	exon4	c.C273A	p.V91V	TCCAGAGACCCCT		131	5	0.04	121	1	0.0082644628		76		1	0	0.00			
NTF4	4909	broad.mit.edu	37	19	49564741	49564741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NTF4	NM_006179	exon2	c.G514A	p.A172T	GCTTGGCCTTGCA		238	7	0.03	228	0	0		10		1	0	0.00			
TSKS	60385	broad.mit.edu	37	19	50251405	50251405	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TSKS	NM_021733	exon4	c.C516T	p.S172S	ATTCTCGCTCAGC		162	4	0.02	162	0	0		97		1	0	0.00			
ZNF845	91664	hgsc.bcm.edu	37	19	53855197	53855197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	ZNF845,bladder,carcinoma,+1,3	ZNF845	NM_138374	exon4	c.G1269A	p.M423I	TCAGATGTCATCC		119	5	0.04	145	1	0.0068965517		1	3	3	0	0.00			
ZNF813	126017	broad.mit.edu	37	19	53995075	53995076	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZNF813	NM_001004301	exon4	c.1589_1590insG	p.K530fs	GTGGCAAGGTTTT		221	4	0.02	219	0	0		81		4	0	0.00			
ZNF814	730051	broad.mit.edu	37	19	58385702	58385704	+	In_Frame_Del	DEL	ATA	ATA	-	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	ATA	ATA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZNF814	NM_001144989	exon3	c.1054_1056del	p.352_352del	ACATTCATAATGT		379	7	0.02	372	0	0		93		13	0	0.00			
C2orf50	130813	broad.mit.edu	37	2	11284192	11284193	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	C2orf50	NM_182500	exon3	c.444_445insG	p.E148fs	CACAGAAGGGGCC		329	5	0.02	278	0	0		12		15	0	0.00			
GEN1	348654	broad.mit.edu	37	2	17954019	17954019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GEN1	NM_182625	exon8	c.G921T	p.R307S	TGATAGGCAACTC		259	5	0.02	179	0	0		79		1	0	0.00			
PUM2	23369	broad.mit.edu	37	2	20453737	20453737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PUM2	NM_015317	exon19	c.C2909A	p.A970D	CTCTCAGCACGGG		106	3	0.03	82	0	0		91		59	0	0.00			
APOB	338	broad.mit.edu	37	2	21232321	21232321	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	APOB	NM_000384	exon26	c.C7419A	p.T2473T	GGCCTTGGTTTCC		206	6	0.03	164	1	0.006097561		761		0	0				
NCOA1	8648	broad.mit.edu	37	2	24952606	24952606	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NCOA1	NM_147223	exon15	c.G3123A	p.R1041R	GCCCAGGCAAACT		208	4	0.02	173	3	0.0173410405		210		8	0	0.00			
IFT172	26160	broad.mit.edu	37	2	27688723	27688723	+	Silent	SNP	G	G	T	rs373009930	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	IFT172	NM_015662	exon17	c.C1719A	p.G573G	TCCCCCGCCCCGC		297	3	0.01	180	0	0		119		4	0	0.00			
SLC4A1AP	22950	broad.mit.edu	37	2	27908039	27908039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLC4A1AP	NM_018158	exon10	c.G2011T	p.D671Y	CTGGAGGATGGAA		269	4	0.01	227	0	0		63		126	0	0.00			
CAPN14	440854	broad.mit.edu	37	2	31420142	31420142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CAPN14	NM_001145122	exon8	c.T848C	p.V283A	CATTCCACCTTTC		275	3	0.01	230	1	0.0043478261		36		0	0				
THUMPD2	80745	broad.mit.edu	37	2	39998751	39998752	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	THUMPD2	NM_025264	exon2	c.156_157insT	p.F52fs	GGTGGTGAAAAAA		466	0	0.00	377	0	0		35		0	0				
THADA	63892	broad.mit.edu	37	2	43797579	43797579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	THADA	NM_001083953	exon14	c.C2135A	p.P712Q	TTCTCTGGTTCAC		301	6	0.02	223	4	0.0179372197		131		4	0	0.00			
EPAS1	2034	broad.mit.edu	37	2	46596999	46596999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	EPAS1	NM_001430	exon7	c.G813T	p.E271D	TGAGGAGCTGCTT		264	4	0.02	165	0	0		83		9	0	0.00			
NRXN1	9378	broad.mit.edu	37	2	50724692	50724692	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NRXN1	NM_001135659	exon15	c.C2778T	p.G926G	TATGTCGCCATTT		157	5	0.03	152	0	0		1118		0	0				
VRK2	7444	broad.mit.edu	37	2	58386754	58386754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	VRK2	NM_001130480	exon13	c.G1453T	p.A485S	ACAAACGCAGATG		156	4	0.03	140	0	0		46		194	0	0.00			
VPS54	51542	broad.mit.edu	37	2	64193029	64193029	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	VPS54	NM_016516	exon6	c.564delT	p.F188fs	AGTATTAAAATGA		639	5	0.01	412	0	0		57		7	0	0.00			
VAX2	25806	broad.mit.edu	37	2	71148283	71148283	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	VAX2	NM_012476	exon2	c.G303T	p.R101R	GGACCGGCCCAAG		308	3	0.01	220	1	0.0045454545		27		0	0				
ATP6V1B1	525	broad.mit.edu	37	2	71190761	71190761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ATP6V1B1	NM_001692	exon11	c.G1120T	p.D374Y	TACGTGGACAGAC		333	6	0.02	221	2	0.0090497738		66		0	0				
ALMS1	7840	broad.mit.edu	37	2	73676896	73676896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ALMS1	NM_015120	exon8	c.G3239T	p.G1080V	TCCCTGGACCAGC		253	4	0.02	176	0	0		384		2	0	0.00			
WDR54	84058	broad.mit.edu	37	2	74649360	74649360	+	Missense_Mutation	SNP	C	C	T	rs138696895	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	WDR54	NM_032118	exon2	c.C80T	p.P27L	AGCTGCCGGCTCG		199	5	0.03	131	0	0		17		96	1	0.01			
GCFC2	6936	broad.mit.edu;mdanderson.org	37	2	75937788	75937788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001201335	exon1	c.G194A	p.R65H	CGGCCACGAGGGC		13	2	0.15	12	0	0				6	0	0.00			
USP39	10713	broad.mit.edu	37	2	85843583	85843583	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	USP39	NM_001256725	exon1	c.C265T	p.R89X	GAGGTGCGAGGTG		229	3	0.01	172	0	0		33		58	0	0.00			
.	0	broad.mit.edu	37	2	89278486	89278486	+	RNA	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	GAGAAGCTGAGCT		451	10	0.02	357	2	0.0056022409				1	0	0.00			
MRPS5	64969	broad.mit.edu	37	2	95780894	95780894	+	Missense_Mutation	SNP	C	C	T	rs201430985		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MRPS5	NM_031902	exon3	c.G194A	p.R65H	AGTGCACGGCTCA		251	5	0.02	196	1	0.0051020408		52		257	0	0.00			
FAHD2A	51011	broad.mit.edu	37	2	96078220	96078220	+	Nonsense_Mutation	SNP	G	G	T	rs376463411	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FAHD2A	NM_016044	exon6	c.G724T	p.E242X	AATGGGGAAGTGG		212	4	0.02	184	0	0		25		223	0	0.00			
SNRNP200	23020	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96940775	96940775	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SNRNP200	NM_014014	exon45	c.C6386G	p.A2129G	GTCTCAGCTTCTT		146	46	0.32	108	1	0.0092592593		195		1175	41	0.03			
RPL31	6160	broad.mit.edu	37	2	101619185	101619185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RPL31	NM_001098577	exon2	c.G22T	p.G8C	AAGGGTGGCGAGA		272	7	0.03	187	0	0		12		19778	12	0.00			
FBLN7	129804	broad.mit.edu	37	2	112922735	112922735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FBLN7	NM_153214	exon3	c.G393T	p.Q131H	GGAGCAGCCCCAC		260	4	0.02	191	0	0		49		3	0	0.00			
PSD4	23550	broad.mit.edu	37	2	113953723	113953723	+	Splice_Site	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PSD4	NM_012455	exon12	c.2226-1G>T	.	TGTTCAGGGATGA		315	3	0.01	200	0	0		74		0	0				
POTEE	445582	broad.mit.edu	37	2	131981234	131981234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001083538	exon2	c.G587A	p.R196Q	ACAGACGATGTCA		591	10	0.02	409	2	0.0048899756				0	0				
ANKRD30BL	554226	broad.mit.edu	37	2	132905710	132905710	+	Silent	SNP	A	A	G	rs375594327		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ANKRD30BL	.	.	.	.	CTATTCATCAGGT		777	4	0.01	790	1	0.0012658228		36		0	0				
UBXN4	23190	broad.mit.edu	37	2	136537757	136537757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	UBXN4	NM_014607	exon12	c.G1190T	p.G397V	AGGCAGGAAGACC		174	3	0.02	170	1	0.0058823529		54		56	0	0.00			
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141294207	141294207	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	LRP1B,NS,carcinoma,+2,1	LRP1B	NM_018557	exon46	c.A7585G	p.T2529A	CACAGGTGAGCTG		281	105	0.37	288	0	0		2	1	0	0				
PKP4	8502	mdanderson.org	37	2	159499039	159499039	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001005476	exon11	c.G1737T	p.L579L	CCTTCTGGACCAC		113	5	0.04	103	0	0				13	0	0.00			
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170096096	170096096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	LRP2,colon,carcinoma,-1,1	LRP2	NM_004525	exon26	c.G4235A	p.R1412Q	GAGCACCGGAAAG		312	31	0.10	279	0	0		-1	1	0	0				
TTN	7273	broad.mit.edu	37	2	179430994	179430994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TTN	NM_001267550	exon326	c.C79865A	p.P26622H	ATCTCAGGCGTTG		183	4	0.02	132	0	0		18412		0	0				
CCDC141	285025	broad.mit.edu	37	2	179843270	179843270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CCDC141	NM_173648	exon3	c.C358A	p.L120I	TTTCAAGCATGGA		148	4	0.03	136	0	0		362		3	0	0.00			
FSIP2	401024	broad.mit.edu	37	2	186672907	186672907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FSIP2	NM_173651	exon17	c.G19141A	p.A6381T	GTGAATGCAATTT		458	9	0.02	406	2	0.0049261084		251		0	0				
COQ10B	80219	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	198334798	198334798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	COQ10B	NM_025147	exon4	c.C452A	p.S151Y	AGGCATCTTGTAC		211	11	0.05	186	1	0.0053763441		18		33	1	0.03			
SGOL2	151246	broad.mit.edu	37	2	201399866	201399867	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SGOL2	NM_152524	exon3	c.281_282insA	p.T94fs	AGAACACATTTCT		440	8	0.02	365	0	0		126		3	0	0.00			
NBEAL1	65065	broad.mit.edu	37	2	204039941	204039942	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NBEAL1	NM_001114132	exon41	c.6308_6309insG	p.A2103fs	ATTCTGCGGGGGT		417	0	0.00	404	0	0		266		1	0	0.00			
DYTN	391475	broad.mit.edu	37	2	207527786	207527786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DYTN	NM_001093730	exon11	c.C1474A	p.P492T	TTTTGGGGATGTC		278	4	0.01	233	1	0.0042918455		168		0	0				
KANSL1L	151050	broad.mit.edu	37	2	210888778	210888779	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_152519	exon14	c.2712_2713insT	p.L904fs	TTGATTTAAAGAA		233	4	0.02	210	0	0				14	0	0.00			
FN1	2335	broad.mit.edu	37	2	216235100	216235100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FN1	NM_212482	exon41	c.C6770A	p.A2257D	TAGGTGGCACCTC		152	5	0.03	129	1	0.007751938		521		1275	0	0.00			
STK36	27148	broad.mit.edu	37	2	219540116	219540116	+	Silent	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	STK36	NM_015690	exon5	c.C354A	p.S118S	GCATTCCCACCGC		280	2	0.01	244	0	0		111		7	0	0.00			
MFF	56947	broad.mit.edu	37	2	228220439	228220439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MFF	NM_020194	exon10	c.G859T	p.D287Y	TCAGATGACCTGA		190	3	0.02	194	0	0		48		447	1	0.00			
HJURP	55355	broad.mit.edu	37	2	234750714	234750714	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	HJURP	NM_018410	exon8	c.G712T	p.E238X	TGGTCTCTTGTAG		121	4	0.03	152	0	0		72		98	0	0.00			
IQCA1	79781	broad.mit.edu	37	2	237327829	237327829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	IQCA1	NM_001270585	exon8	c.C1118T	p.A373V	TTTTTGGCTTTCT		736	6	0.01	669	1	0.0014947683		170		2	0	0.00			
COL6A3	1293	broad.mit.edu	37	2	238271979	238271979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	COL6A3	NM_004369	exon14	c.C5980A	p.L1994M	ACTCCAGATGCAT		287	4	0.01	268	3	0.0111940299		608		32	0	0.00			
COL6A3	1293	broad.mit.edu	37	2	238296450	238296450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	COL6A3_ENST00000392004,NS,carcinoma,+1,2	COL6A3	NM_004369	exon4	c.C1087A	p.R363S	CGTAGCGAATCTC		111	3	0.03	87	1	0.0114942529		608	2	2	0	0.00			
PER2	8864	mdanderson.org	37	2	239161833	239161833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_022817	exon19	c.C2831T	p.A944V	TGTGAGGCAGAGG		39	3	0.08	44	0	0				2	0	0.00			
TRMT6	51605	broad.mit.edu	37	20	5924639	5924639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TRMT6	NM_015939	exon5	c.G497A	p.R166H	AGAATACGGGTGG		288	5	0.02	245	3	0.012244898		28		30	0	0.00			
KIF3B	9371	broad.mit.edu	37	20	30898575	30898575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KIF3B	NM_004798	exon2	c.G995T	p.R332L	CTCTGCGATATGC		163	3	0.02	186	1	0.0053763441		75		4	0	0.00			
TTI1	9675	broad.mit.edu	37	20	36642033	36642033	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	TTI1,NS,carcinoma,-2,1	TTI1	NM_014657	exon3	c.C186A	p.T62T	ACCTGGGGTCTTC		175	4	0.02	175	0	0		104	1	5	0	0.00			
PTPRT	11122	broad.mit.edu	37	20	40827906	40827906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PTPRT	NM_133170	exon17	c.C2522A	p.S841Y	GAACTAGAAGAGA		208	3	0.01	226	1	0.0044247788		372		0	0				
DBNDD2	55861	broad.mit.edu	37	20	44037587	44037587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DBNDD2	NM_001048226	exon2	c.C592A	p.L198I	ATGCCCCTCTGCT		104	4	0.04	106	0	0		30		2	0	0.00			
PLTP	5360	broad.mit.edu	37	20	44539808	44539808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PLTP	NM_182676	exon3	c.C183A	p.F61L	GTAGTAGAAGTGG		185	4	0.02	161	1	0.0062111801		49		101	0	0.00			
PCIF1	63935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44574893	44574893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_022104	exon14	c.G1483T	p.V495L	CTGCCTGTGCATG		95	17	0.18	63	0	0				100	28	0.28			
MC3R	4159	broad.mit.edu	37	20	54824540	54824540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MC3R	NM_019888	exon1	c.C641T	p.A214V	TCTTTGCGCGGCT		186	4	0.02	149	0	0		83		0	0				
.	0	broad.mit.edu	37	21	10862831	10862831	+	RNA	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	TGCAAGGCTTCTG		251	4	0.02	220	0	0				0	0				
ANKRD20A11P	391267	hgsc.bcm.edu	37	21	15343568	15343568	+	RNA	SNP	A	A	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	AATTATAGCAAAT		92	6	0.07	55	0	0				0	0				
BTG3	10950	broad.mit.edu	37	21	18966553	18966553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	BTG3	NM_001130914	exon6	c.C749A	p.P250H	GGAGGAGGATAGT		305	4	0.01	204	0	0		27		320	0	0.00			
LTN1	26046	broad.mit.edu	37	21	30357129	30357129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LTN1	NM_015565	exon4	c.G598A	p.A200T	ACTGAGCCATTAG		271	5	0.02	128	0	0		141		0	0				
BACH1	571	broad.mit.edu	37	21	30693795	30693795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	BACH1	NM_206866	exon2	c.G194T	p.G65V	TCGTAGGCCAGGC		316	4	0.01	152	0	0		66		1	0	0.00			
GRIK1	2897	broad.mit.edu	37	21	31045454	31045454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GRIK1	NM_175611	exon4	c.C575A	p.A192D	GAGGGAGCTTTGA		282	5	0.02	158	0	0		293		0	0				
TIAM1	7074	broad.mit.edu	37	21	32624145	32624145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	TIAM1_ENST00000286827,rectum,carcinoma,0,2	TIAM1	NM_003253	exon6	c.G1324A	p.V442I	TCTTGACGGCCAG		300	3	0.01	157	0	0		522	2	3	0	0.00			
URB1	9875	broad.mit.edu	37	21	33717054	33717054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	URB1	NM_014825	exon24	c.C4082T	p.A1361V	GAGTCGGCCACGA		75	3	0.04	55	0	0		176		14	0	0.00			
BRWD1	54014	broad.mit.edu	37	21	40581968	40581968	+	Missense_Mutation	SNP	G	G	T	rs147607337	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	BRWD1	NM_018963	exon36	c.C4150A	p.L1384M	ATATCAGCCGGAT		247	4	0.02	122	0	0		325		10	0	0.00			
DSCAM	1826	broad.mit.edu	37	21	41648167	41648167	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DSCAM	NM_001271534	exon11	c.C2213A	p.A738D	TTTAGGGCAATTG		261	4	0.02	167	0	0		347		2	0	0.00			
UMODL1	89766	broad.mit.edu	37	21	43547248	43547248	+	Silent	SNP	G	G	T	rs373998313	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	UMODL1	NM_173568	exon18	c.G3810T	p.G1270G	AGTGGGGCTCTAC		225	3	0.01	132	0	0		186		83	0	0.00			
RRP1	8568	broad.mit.edu	37	21	45217893	45217893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RRP1	NM_003683	exon8	c.G723T	p.E241D	GGATGAGGAGGTG		227	3	0.01	152	0	0		23		553	0	0.00			
DNMT3L	29947	broad.mit.edu	37	21	45679568	45679568	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DNMT3L	NM_013369	exon4	c.C178T	p.Q60X	GAACCTGGAGACT		299	6	0.02	195	0	0		33		1380	1	0.00			
IL17RA	23765	mdanderson.org	37	22	17589847	17589847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_014339	exon13	c.C1738T	p.R580C	CAGGTCCGCTGTC		19	2	0.11	24	0	0				15	0	0.00			
PRODH	5625	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18900987	18900987	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PRODH	NM_016335	exon14	c.C1579G	p.L527V	CTAGCAGCTGTCC		190	90	0.47	230	2	0.0086956522		42		434	210	0.48			
CLTCL1	8218	broad.mit.edu	37	22	19263276	19263276	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CLTCL1	NM_001835	exon2	c.C120A	p.I40I	CTCTCGGATACAT		143	4	0.03	141	0	0		115		0	0				
SCARF2	91179	mdanderson.org	37	22	20780271	20780271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	SCARF2,middle_lobe,carcinoma,-1,1	SCARF2	NM_153334	exon11	c.G2007T	p.K669N	GGACACCTTAGGC		16	3	0.19	31	0	0		-1	1	8	0	0.00			
CABIN1	23523	broad.mit.edu	37	22	24480695	24480695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CABIN1	NM_001199281	exon21	c.G3074T	p.S1025I	CCCTTAGCCTGGA		154	4	0.03	167	1	0.005988024		153		22	0	0.00			
ZNRF3	84133	mdanderson.org	37	22	29446834	29446834	+	Missense_Mutation	SNP	C	C	T	rs375016509		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001206998	exon8	c.C2665T	p.R889W	CTACTGCGGCCTG		26	2	0.08	23	0	0				62	0	0.00			
SLC5A4	6527	broad.mit.edu	37	22	32620367	32620367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLC5A4	NM_014227	exon13	c.C1552A	p.P518T	TCTTGGGACAGTT		175	4	0.02	174	0	0		82		0	0				
LGALS2	3957	broad.mit.edu	37	22	37966694	37966694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LGALS2	NM_006498	exon3	c.C138A	p.F46L	AGGGTTGAAATGC		169	5	0.03	150	1	0.0066666667		16		24	0	0.00			
NOL12	79159	broad.mit.edu	37	22	38087248	38087248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	NOL12,NS,carcinoma,-1,2	NOL12	NM_024313	exon6	c.C547T	p.R183W	CCCCGACGGGCCC		320	4	0.01	324	0	0		22	2	142	0	0.00			
TAB1	10454	mdanderson.org	37	22	39826224	39826224	+	Silent	SNP	G	G	A	rs375542675		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_006116	exon11	c.G1512A	p.P504P	AGCACCGTAGGGC		31	3	0.10	33	0	0				28	0	0.00			
.	0	broad.mit.edu	37	22	41585696	41585697	+	RNA	INS	-	-	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	CTGGCCATTTTTT		36	7	0.19	38	0	0				0	0				
SREBF2	6721	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	22	42289198	42289198	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_004599	exon12	c.C2286T	p.C762C	GCTCTGCCACCCC		94	5	0.05	72	0	0				95	0	0.00			
CYP2D6	1565	broad.mit.edu	37	22	42522918	42522918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CYP2D6	NM_000106	exon8	c.C1250A	p.P417H	TGTTCGGGGTGGA		372	5	0.01	346	0	0		104		4	0	0.00			
SETMAR	6419	broad.mit.edu	37	3	4355265	4355266	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SETMAR	NM_001276325	exon2	c.840_841insG	p.H280fs	AGATCATGGGAAA		375	5	0.01	226	0	0		30		11	0	0.00			
PPARG	5468	broad.mit.edu	37	3	12447553	12447554	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PPARG	NM_015869	exon5	c.792_793insT	p.I264fs	GGCGATCTTGACA		241	4	0.02	187	0	0		49		5	0	0.00			
IQSEC1	9922	broad.mit.edu	37	3	12977109	12977109	+	Silent	SNP	G	G	T	rs148022111	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	IQSEC1	NM_014869	exon3	c.C1449A	p.I483I	GCAGTTGATGGTA		152	5	0.03	125	2	0.016		88		5	0	0.00			
ANKRD28	23243	broad.mit.edu	37	3	15731642	15731642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ANKRD28	NM_015199	exon18	c.C1757A	p.P586H	TCTAGGGGTGTTC		284	7	0.02	207	0	0		121		21	0	0.00			
ARPP21	10777	broad.mit.edu	37	3	35834022	35834022	+	Splice_Site	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ARPP21	NM_001267619	exon18	c.G2184T	p.Q728H	TTATCAGGTGCTC		326	3	0.01	224	0	0		153		0	0				
DCLK3	85443	broad.mit.edu	37	3	36779862	36779863	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	DCLK3,NS,carcinoma,+2,1	DCLK3	NM_033403	exon2	c.289_290insG	p.R97fs	TCCCCCTCCCCCA		287	6	0.02	173	0	0		95	1	4	0	0.00			
ZNF35	7584	broad.mit.edu	37	3	44694153	44694153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZNF35	NM_003420	exon3	c.G297T	p.K99N	GGCCAAGAGTGAG		159	3	0.02	120	0	0		34		12	0	0.00			
KIF15	56992	broad.mit.edu	37	3	44828007	44828007	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KIF15	NM_020242	exon7	c.G580T	p.G194X	AAGAAGGGAGTCT		229	4	0.02	164	0	0		103		10	0	0.00			
ALS2CL	259173	broad.mit.edu	37	3	46713682	46713682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ALS2CL	NM_001190707	exon23	c.C2482A	p.L828M	TGACCAGGGAGTA		286	4	0.01	158	0	0		78		18	0	0.00			
CCDC12	151903	broad.mit.edu	37	3	47018230	47018230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CCDC12	NM_144716	exon2	c.A32T	p.E11V	TTGCCCGCGTACG		151	4	0.03	88	0	0		9		49	1	0.02			
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu	37	3	47045654	47045656	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	TCT	TCT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NBEAL2	NM_015175	exon37	c.5968_5970del	p.1990_1990del	TTGAGCTCTTCTT		163	13	0.08	113	0	0		267		35	0	0.00			
NCKIPSD	51517	broad.mit.edu	37	3	48717114	48717114	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NCKIPSD	NM_016453	exon8	c.C1383A	p.L461L	GCACTTGAGGAGC		207	6	0.03	155	1	0.0064516129		52		71	1	0.01			
USP19	10869	broad.mit.edu	37	3	49146487	49146487	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	USP19	NM_001199160	exon27	c.C4164A	p.G1388G	GAGGCAGCCCTCA		328	5	0.02	215	2	0.0093023256		158		18	0	0.00			
LAMB2	3913	broad.mit.edu	37	3	49162818	49162818	+	Missense_Mutation	SNP	C	C	T	rs146326783	bycluster;byfrequency	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LAMB2	NM_002292	exon19	c.G2588A	p.R863H	TGGCAGCGGTCAC		313	3	0.01	161	0	0		156		15	0	0.00			
BSN	8927	broad.mit.edu	37	3	49690876	49690876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	BSN	NM_003458	exon5	c.C3887T	p.A1296V	AGAGTGCATACAT		275	9	0.03	191	5	0.0261780105		272		0	0				
SEMA3F	6405	broad.mit.edu	37	3	50211240	50211240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SEMA3F	NM_004186	exon3	c.G127T	p.G43C	GCCACAGGCACCG		191	5	0.03	109	0	0		62		2	0	0.00			
STAB1	23166	broad.mit.edu	37	3	52539151	52539151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	STAB1,NS,malignant_melanoma,0,1	STAB1	NM_015136	exon13	c.G1510T	p.D504Y	CCTGGGGATCCCA		209	5	0.02	175	0	0		178	1	0	0				
IL17RB	55540	broad.mit.edu	37	3	53889325	53889325	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	IL17RB	NM_018725	exon6	c.C486T	p.C162C	AGGCTGCCTAGAC		322	4	0.01	226	0	0		27		2	0	0.00			
SLMAP	7871	broad.mit.edu	37	3	57857388	57857388	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLMAP	NM_007159	exon11	c.G1161T	p.G387G	TGGCGGGGACTGC		263	3	0.01	198	1	0.0050505051		46		0	0				
DNASE1L3	1776	broad.mit.edu	37	3	58183671	58183671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DNASE1L3	NM_004944	exon6	c.G581A	p.C194Y	TAGCTGCAGCCGG		204	4	0.02	125	1	0.008		36		0	0				
KBTBD8	84541	broad.mit.edu	37	3	67054481	67054481	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KBTBD8	NM_032505	exon3	c.G1090C	p.D364H	ATGTATGATCATT		201	5	0.02	159	0	0		101		4	0	0.00			
LOC440970	0	broad.mit.edu	37	3	84741480	84741480	+	RNA	DEL	A	A	-	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	TCCCAGAAAAAAA		6	3	0.50	4	0	0				0	0				
OR5H1	26341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	97852456	97852456	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001005338	exon1	c.A915C	p.L305F	AATGTTAAAAAAA		133	21	0.16	90	0	0				0	0				
CMSS1	84319	broad.mit.edu	37	3	99881276	99881276	+	Splice_Site	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_032359	exon4	c.G355T	p.D119Y	CTGCCAGGTATAG		229	3	0.01	143	0	0				392	0	0.00			
TFG	10342	broad.mit.edu	37	3	100455557	100455558	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TFG	NM_001007565	exon6	c.718_719insA	p.E240fs	CAGATTGAAGGTA		292	7	0.02	170	0	0		42		197	0	0.00			
NFKBIZ	64332	broad.mit.edu	37	3	101574033	101574033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NFKBIZ	NM_031419	exon7	c.G1571T	p.G524V	AGAAGGGCCACTC		271	3	0.01	184	1	0.0054347826		55		0	0				
ATP6V1A	523	broad.mit.edu	37	3	113513972	113513972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ATP6V1A	NM_001690	exon10	c.G1147T	p.A383S	CGTCTGGCCTCGT		168	6	0.04	129	1	0.007751938		71		11	0	0.00			
ZNF80	7634	broad.mit.edu	37	3	113956064	113956064	+	Translation_Start_Site	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZNF80	.	.	.	.	GTTACAGCTCTTA		72	3	0.04	43	0	0		75		0	0				
STXBP5L	9515	broad.mit.edu	37	3	120764286	120764286	+	Missense_Mutation	SNP	C	C	T	rs375292809		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	STXBP5L,colon,carcinoma,0,2	STXBP5L	NM_014980	exon5	c.C374T	p.A125V	AGGGTGCCTTGGT		282	4	0.01	202	0	0		159	2	0	0				
POLQ	10721	broad.mit.edu	37	3	121207058	121207058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	POLQ	NM_199420	exon16	c.G4720T	p.D1574Y	ATATATCCACATT		137	5	0.04	90	0	0		273		3	0	0.00			
CASR	846	broad.mit.edu	37	3	121980486	121980486	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CASR	NM_001178065	exon4	c.G604T	p.E202X	ATCATCGAGTATT		249	5	0.02	169	2	0.0118343195		190		0	0				
KPNA1	3836	broad.mit.edu	37	3	122168466	122168466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KPNA1	NM_002264	exon9	c.C872T	p.A291V	ATGACCGCTTGAA		495	4	0.01	371	2	0.0053908356		42		49	0	0.00			
ADCY5	111	broad.mit.edu	37	3	123010141	123010141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ADCY5	NM_183357	exon18	c.C3146A	p.A1049D	TGAGCGGCCACGT		355	8	0.02	216	1	0.0046296296		169		28	0	0.00			
ITGB5	3693	broad.mit.edu	37	3	124592308	124592308	+	Silent	SNP	G	G	T	rs200795031	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ITGB5	NM_002213	exon2	c.C141A	p.A47A	GCACCAGGCACAT		264	3	0.01	160	0	0		66		85	0	0.00			
RAB7A	7879	broad.mit.edu	37	3	128516833	128516833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RAB7A	NM_004637	exon3	c.G101T	p.S34I	AATTCAGCAATCA		302	5	0.02	242	0	0		17		769	0	0.00			
TMCC1	23023	broad.mit.edu	37	3	129370502	129370502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TMCC1	NM_001017395	exon6	c.C1784A	p.A595D	ATGACAGCCAGGA		191	3	0.02	156	0	0		105		22	0	0.00			
COL6A5	256076	broad.mit.edu	37	3	130107651	130107651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	COL6A5	NM_153264	exon6	c.G2090T	p.R697I	TAGATAGAATGTC		225	3	0.01	158	2	0.0126582278		205		0	0				
DNAJC13	23317	broad.mit.edu	37	3	132202314	132202314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DNAJC13	NM_015268	exon28	c.G3075T	p.Q1025H	ACCCCAGCTTAAG		284	4	0.01	196	0	0		253		5	0	0.00			
TOPBP1	11073	broad.mit.edu	37	3	133327786	133327786	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TOPBP1	NM_007027	exon26	c.G4194T	p.K1398N	AATAACCTTCCAC		593	5	0.01	392	0	0		218		171	0	0.00			
ESYT3	83850	broad.mit.edu	37	3	138191495	138191495	+	Missense_Mutation	SNP	G	G	T	rs372734965		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ESYT3	NM_031913	exon18	c.G2031T	p.E677D	CTGTGAGCCCATC		207	3	0.01	118	0	0		64		15	0	0.00			
CEP70	80321	broad.mit.edu	37	3	138219304	138219305	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CEP70	NM_024491	exon15	c.1474_1475insA	p.V492fs	TATAAACTTCATT		519	7	0.01	349	0	0		51		102	0	0.00			
RASA2	5922	broad.mit.edu	37	3	141235273	141235273	+	Splice_Site	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RASA2	NM_006506	exon3	c.G355T	p.G119X	CGTATAGGTATGT		274	6	0.02	181	1	0.0055248619		169		0	0				
PLS1	5357	broad.mit.edu	37	3	142403123	142403123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PLS1	NM_001172312	exon8	c.G774T	p.E258D	AGGTGAGGAACTA		304	4	0.01	215	0	0		71		12	0	0.00			
U2SURP	23350	broad.mit.edu	37	3	142733171	142733172	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	U2SURP	NM_001080415	exon4	c.241_242insT	p.L81fs	AACAAACTTAAAG		604	6	0.01	451	0	0		66		52	0	0.00			
PLOD2	5352	broad.mit.edu	37	3	145788627	145788627	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PLOD2	NM_182943	exon20	c.C2154A	p.C718X	AATAGAGCAATTG		645	6	0.01	483	0	0		81		178	0	0.00			
PLSCR4	57088	broad.mit.edu	37	3	145914479	145914480	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PLSCR4	NM_001128304	exon9	c.726_727insA	p.N242fs	CATCACATTTTCT		514	4	0.01	349	0	0		44		3	0	0.00			
PFN2	5217	broad.mit.edu	37	3	149686177	149686178	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PFN2	NM_002628	exon2	c.293_294insA	p.T98fs	TTGTATGTTGGCT		328	5	0.02	235	0	0		23		450	0	0.00			
P2RY1	5028	broad.mit.edu	37	3	152554612	152554612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	P2RY1	NM_002563	exon1	c.G1041T	p.E347D	AAGTGAGGCAAAT		161	3	0.02	125	2	0.016		49		4	0	0.00			
TRIM59	286827	broad.mit.edu	37	3	160156583	160156583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TRIM59	NM_173084	exon3	c.C389A	p.P130H	TCTATAGGATGAC		175	4	0.02	115	0	0		42		12	0	0.00			
PRKCI	5584	broad.mit.edu	37	3	170009712	170009713	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PRKCI	NM_002740	exon13	c.1274_1275insA	p.L425fs	AAATTTTAAGAGG		547	4	0.01	388	0	0		82		27	0	0.00			
ABCC5	10057	broad.mit.edu	37	3	183670921	183670921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ABCC5	NM_005688	exon18	c.G2620A	p.A874T	TGAAGGCGGTGCT		232	5	0.02	153	0	0		142		22	0	0.00			
VPS8	23355	broad.mit.edu	37	3	184580796	184580796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	VPS8	NM_001009921	exon15	c.G1336T	p.V446F	CAGCTGGTCTACA		166	5	0.03	104	0	0		109		1	0	0.00			
HRG	3273	broad.mit.edu	37	3	186394998	186394998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	HRG	NM_000412	exon7	c.G904T	p.D302Y	CCTCCAGATGAAA		547	4	0.01	287	1	0.0034843206		81		1	0	0.00			
MUC4	4585	broad.mit.edu	37	3	195508959	195508959	+	Silent	SNP	A	A	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	NM_018406	exon2	c.T9492A	p.G3164G	GGCCTGACCTGTG		82	4	0.05	66	1	0.0151515152		1505	1	10	0	0.00			
PDE6B	5158	broad.mit.edu	37	4	619638	619638	+	Missense_Mutation	SNP	G	G	A	rs376238566		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PDE6B	NM_001145291	exon1	c.G223A	p.V75M	GAGCGCGTGGTCT		129	3	0.02	122	0	0		80		1	0	0.00			
PDE6B	5158	broad.mit.edu;bcgsc.ca	37	4	656329	656329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PDE6B	NM_001145291	exon14	c.T1754C	p.L585P	CGGACCTGGAGGC		116	8	0.07	110	0	0		80		10	0	0.00			
FGFR3	2261	mdanderson.org	37	4	1804666	1804666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001163213	exon8	c.C956A	p.A319D	TGGAGGCCGACGT		56	3	0.05	60	0	0				15	0	0.00			
ADD1	118	broad.mit.edu	37	4	2896372	2896372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	ADD1,NS,carcinoma,-2,1	ADD1	NM_014190	exon6	c.G655T	p.A219S	AATCAGGCCGGCT		286	4	0.01	335	0	0		56	1	31	0	0.00			
SEL1L3	23231	broad.mit.edu	37	4	25769163	25769163	+	Silent	SNP	G	G	T	rs182680181	bycluster;by1000genomes;alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	SEL1L3,NS,carcinoma,0,4	SEL1L3	NM_015187	exon19	c.C2829A	p.I943I	AGCATCGATTTGA		331	7	0.02	403	5	0.0124069479		62	4	19	0	0.00			
N4BP2	55728	broad.mit.edu	37	4	40123092	40123092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	N4BP2	NM_018177	exon9	c.G3361T	p.A1121S	ATTTGGGCCACAA		257	3	0.01	278	0	0		166		2	0	0.00			
GABRA4	2557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	46994860	46994860	+	Missense_Mutation	SNP	G	G	A	rs201606797	by1000genomes	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_000809	exon2	c.C190T	p.R64C	CAGGACGCAGCCT		186	72	0.39	184	0	0	0			0	0				
EPHA5	2044	broad.mit.edu	37	4	66217148	66217148	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	EPHA5,NS,other,0,1	EPHA5	NM_004439	exon14	c.C2467A	p.R823R	GTACCCGGGAAAG		172	4	0.02	170	0	0		315	1	0	0				
RUFY3	22902	broad.mit.edu	37	4	71659525	71659525	+	Missense_Mutation	SNP	G	G	A	rs376846064		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RUFY3	NM_001037442	exon13	c.G1361A	p.R454H	GAAGCCGCCAATC		314	7	0.02	304	1	0.0032894737		61		24	0	0.00			
SHROOM3	57619	broad.mit.edu	37	4	77677789	77677789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SHROOM3	NM_020859	exon8	c.G4897T	p.A1633S	CAGCCAGCACCCA		247	3	0.01	235	0	0		134		14	0	0.00			
AGPAT9	84803	broad.mit.edu	37	4	84518594	84518594	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	AGPAT9,NS,carcinoma,-1,1	AGPAT9	NM_001256421	exon10	c.922delA	p.N308fs	TGCATCAACAATA		767	10	0.01	787	0	0		41	1	7	0	0.00			
SNCA	0	broad.mit.edu	37	4	90743449	90743449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SNCA	NM_000345	exon4	c.C254T	p.A85V	CTCCCTGCTCCCT		146	4	0.03	186	0	0		17		40	0	0.00			
CYP2U1	113612	broad.mit.edu	37	4	108868567	108868567	+	Missense_Mutation	SNP	G	G	T	rs138968113	bycluster;byfrequency;alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CYP2U1	NM_183075	exon3	c.G1162T	p.A388S	ATTGGCGCCAACC		247	3	0.01	240	1	0.0041666667		20		11	0	0.00			
KIAA1109	84162	broad.mit.edu	37	4	123249484	123249484	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KIAA1109	NM_015312	exon64	c.G11221T	p.E3741X	GAGAGGGAAAGGT		112	4	0.04	118	1	0.0084745763		424		0	0				
ADAD1	132612	broad.mit.edu	37	4	123304995	123304995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ADAD1	NM_139243	exon5	c.G403T	p.D135Y	GTGGTGGATGGTA		288	2	0.01	263	6	0.0228136882		94		0	0				
SLC25A31	83447	broad.mit.edu	37	4	128665844	128665844	+	Missense_Mutation	SNP	C	C	T	rs369621147		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLC25A31	NM_031291	exon2	c.C250T	p.R84C	TTTTGGCGTGGCA		183	4	0.02	198	3	0.0151515152		42		0	0				
UCP1	7350	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	141483480	141483480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	UCP1	NM_021833	exon5	c.G676A	p.A226T	CTGTTGCGCAAAA		130	28	0.22	122	1	0.0081967213		33		3	1	0.33			
PPID	5481	broad.mit.edu	37	4	159630976	159630976	+	Splice_Site	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PPID	NM_005038	exon10	c.C1025A	p.A342D	TGGATAGCTGTAA		78	3	0.04	79	0	0		22		230	0	0.00			
RAPGEF2	9693	broad.mit.edu	37	4	160273959	160273959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RAPGEF2	NM_014247	exon21	c.G3505T	p.D1169Y	CTGCACGATGAGA		205	6	0.03	212	2	0.0094339623		171		10	0	0.00			
DDX60	55601	broad.mit.edu	37	4	169208307	169208307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DDX60	NM_017631	exon10	c.C1231A	p.L411I	TCCAGAGATATTC		261	4	0.02	280	0	0		304		1	0	0.00			
TRIP13	9319	mdanderson.org	37	5	893199	893199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001166260	exon1	c.G86T	p.G29V	AGCGCGGCAGCAG		28	3	0.11	26	0	0				21	0	0.00			
PDZD2	23037	broad.mit.edu	37	5	32098547	32098547	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PDZD2	NM_178140	exon22	c.C8025T	p.N2675N	AGTCAACGGCGCC		119	4	0.03	118	0	0		306		6	0	0.00			
NPR3	0	broad.mit.edu	37	5	32789680	32789680	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NPR3	.	.	.	.	TCCTTTCTCTTAA		287	7	0.02	298	0	0		65		0	0				
ADAMTS12	81792	broad.mit.edu	37	5	33614434	33614434	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ADAMTS12	NM_030955	exon16	c.C2436A	p.I812I	TTTCTGGATTGTG		91	4	0.04	93	0	0		464		1	0	0.00			
OSMR	9180	broad.mit.edu	37	5	38933393	38933393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	OSMR	NM_003999	exon18	c.G2787T	p.K929N	AGACAAGGACAGT		235	3	0.01	270	0	0		133		2	0	0.00			
RICTOR	253260	broad.mit.edu;bcgsc.ca	37	5	38958837	38958837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RICTOR	NM_152756	exon23	c.C2275A	p.L759I	CATGTAGCTGGGT		176	6	0.03	198	1	0.0050505051		182		1	0	0.00			
WDR41	55255	broad.mit.edu	37	5	76736715	76736715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	WDR41	NM_018268	exon9	c.C805A	p.L269M	TGTCCAGTTGTGG		98	4	0.04	90	1	0.0111111111		29		33	1	0.03			
MSH3	4437	broad.mit.edu	37	5	80160704	80160704	+	Missense_Mutation	SNP	G	G	T	rs375336744	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MSH3	NM_002439	exon22	c.G3073T	p.V1025L	CACCAGGTGGGGA		140	5	0.04	159	0	0		129		24	0	0.00			
GPR98	84059	broad.mit.edu	37	5	89918485	89918485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	GPR98,NS,carcinoma,0,1	GPR98	NM_032119	exon5	c.G525T	p.K175N	GGAAAAGGGAACC		336	4	0.01	284	0	0		605	1	0	0				
SLCO4C1	353189	broad.mit.edu	37	5	101631695	101631695	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLCO4C1	NM_180991	exon1	c.G272C	p.R91T	AAGTTCCTCCAGC		212	8	0.04	198	0	0		113		1	0	0.00			
.	0	bcgsc.ca	37	5	110284092	110284092	+	RNA	SNP	A	A	G	rs367881369	bycluster	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	TTCCTCATGGTTG		74	9	0.12	58	0	0				3	3	1.00			
.	0	bcgsc.ca	37	5	110284097	110284097	+	RNA	SNP	T	T	C	rs370268370		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	CATGGTTGGCTAA		76	8	0.11	61	0	0				3	2	0.67			
SRP19	7905	ucsc.edu	37	5	112228215	112228215	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SRP19	.	.	.	.	GTTTAACGGACGA		331	2	0.01	336	0	0		12		35	31	0.89	rescued with RNA-seq		
SLC22A4	6583	broad.mit.edu	37	5	131676374	131676374	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLC22A4	NM_003059	exon9	c.C1561T	p.Q521X	TTAGAGCAGATGC		142	3	0.02	107	0	0		45		0	0				
EGR1	1958	broad.mit.edu	37	5	137802588	137802588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	EGR1,colon,carcinoma,0,1	EGR1	NM_001964	exon2	c.G450T	p.W150C	CTTGTGGCCCGAG		139	6	0.04	105	0	0		52	1	15	0	0.00			
NDST1	3340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	149932837	149932837	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001543	exon15	c.T2592G	p.Y864X	GCTGTATAAGATG		94	49	0.52	78	0	0				52	29	0.56			
GRIA1	0	broad.mit.edu	37	5	153026671	153026671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GRIA1	NM_001258021	exon3	c.G434T	p.S145I	TCATCAGCATCAT		147	3	0.02	150	0	0		321		9	0	0.00			
GABRB2	0	broad.mit.edu	37	5	160721152	160721152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	GABRB2_ENST00000274547,NS,carcinoma,-1,2	GABRB2	NM_021911	exon11	c.G1475A	p.R492H	AATATGCGGGACC		172	4	0.02	228	1	0.0043859649		161	2	0	0				
WWC1	23286	broad.mit.edu	37	5	167719173	167719173	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	WWC1	NM_015238	exon1	c.C16T	p.L6L	CCGGAGCTGCCCC		150	3	0.02	126	1	0.0079365079		98		1	0	0.00			
STK10	6793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	171520918	171520918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_005990	exon9	c.G1052T	p.S351I	TTGAGGCTTGGCG		164	78	0.48	141	0	0				34	19	0.56			
STC2	8614	broad.mit.edu	37	5	172750382	172750382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	STC2	NM_003714	exon3	c.C346A	p.H116N	ACCTGTGCCGCAG		150	5	0.03	183	2	0.0109289617		59		200	4	0.02			
CDHR2	54825	broad.mit.edu	37	5	176002409	176002409	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CDHR2	NM_017675	exon9	c.G750T	p.V250V	CTCTGTGGCTGAG		125	4	0.03	175	1	0.0057142857		152		0	0				
FGFR4	2264	broad.mit.edu	37	5	176519440	176519440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FGFR4	NM_022963	exon6	c.G846T	p.Q282H	CATCCAGTGGCTG		254	4	0.02	215	2	0.0093023256		174		58	0	0.00			
EXOC2	55770	broad.mit.edu	37	6	629857	629857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	EXOC2	NM_018303	exon4	c.C400A	p.P134T	CAAGCGGGTTAGC		197	4	0.02	132	0	0		81		7	0	0.00			
BPHL	670	mdanderson.org	37	6	3119019	3119019	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_004332	exon1	c.G45T	p.L15L	GCGGCTGCTTCTC		49	3	0.06	23	1	0.0434782609				25	0	0.00			
F13A1	2162	broad.mit.edu	37	6	6305608	6305608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	F13A1	NM_000129	exon3	c.C295A	p.L99I	TGAAGAGATCCCT		236	3	0.01	146	1	0.0068493151		135		1	0	0.00			
CMAHP	0	broad.mit.edu	37	6	25089567	25089568	+	RNA	INS	-	-	A	rs3838674	bycluster;byfrequency;by1000genomes	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CMAHP	.	.	.	.	AGTCTGCCCCAGC		11	6	0.55	4	0	0		6		0	0				
TRIM38	10475	broad.mit.edu	37	6	25967154	25967154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TRIM38	NM_006355	exon3	c.G404T	p.G135V	GCCAGGGCTACAA		143	5	0.03	114	1	0.0087719298		50		8	0	0.00			
HIST1H1C	3006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26056602	26056602	+	Missense_Mutation	SNP	G	G	C	rs200705328	bycluster;by1000genomes	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_005319	exon1	c.C55G	p.P19A	TTACAGGGGCCTT		282	100	0.35	170	0	0	0			57	20	0.35			
OR2B6	26212	broad.mit.edu	37	6	27925454	27925454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	OR2B6	NM_012367	exon1	c.G436T	p.A146S	TTGGCAGCTGCAT		138	4	0.03	77	0	0		48		0	0				
NEU1	4758	broad.mit.edu	37	6	31830433	31830433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NEU1	NM_000434	exon1	c.G121A	p.A41T	AGGCTGCCAGAGA		242	6	0.02	178	2	0.0112359551		21		96	0	0.00			
NOTCH4	4855	broad.mit.edu	37	6	32163486	32163486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NOTCH4	NM_004557	exon30	c.C5740A	p.R1914S	ACCTACGGCCGCG		111	3	0.03	66	0	0		201		9	0	0.00			
STK38	11329	broad.mit.edu	37	6	36463608	36463608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	STK38	NM_007271	exon14	c.C1351A	p.L451M	CAGTCAGGCCCTC		179	4	0.02	110	0	0		54		21	0	0.00			
FGD2	221472	broad.mit.edu	37	6	36995746	36995746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FGD2	NM_173558	exon16	c.T1775C	p.I592T	CCTCCATCCCCCT		198	13	0.07	143	10	0.0699300699		65		2	0	0.00			
DNAH8	1769	broad.mit.edu	37	6	38942237	38942237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	DNAH8_ENST00000359357,bladder,carcinoma,0,2	DNAH8	NM_001206927	exon85	c.G12766T	p.D4256Y	CTTCTGGACATCA		177	7	0.04	103	1	0.0097087379		1239	2	0	0				
TAF8	129685	broad.mit.edu	37	6	42025143	42025143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TAF8	NM_138572	exon5	c.G381T	p.Q127H	CAATCAGCCAGTG		187	3	0.02	115	0	0		25		48	0	0.00			
XPO5	57510	broad.mit.edu	37	6	43519113	43519113	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	XPO5	NM_020750	exon15	c.C1650A	p.S550S	GACGCAGGACAGG		325	3	0.01	224	0	0		79		63	0	0.00			
TCTE1	202500	broad.mit.edu	37	6	44248061	44248061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	TCTE1	NM_182539	exon5	c.C1363A	p.L455M	CTGACAGGCGCAA		270	3	0.01	178	0	0		77		1	0	0.00			
GPR115	221393	broad.mit.edu	37	6	47678470	47678470	+	Splice_Site	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GPR115	NM_153838	exon4	c.149-1G>T	.	TTTATAGAGAAAT		241	4	0.02	153	1	0.0065359477		140		0	0				
COL21A1	0	broad.mit.edu	37	6	55989038	55989038	+	Splice_Site	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	COL21A1	NM_030820	exon15	c.C1703A	p.A568D	CTCACAGCAGGTC		737	4	0.01	556	0	0		201		5	0	0.00			
EYS	346007	broad.mit.edu	37	6	66053998	66053998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	EYS_ENST00000370621,NS,carcinoma,0,2	EYS	NM_001142801	exon10	c.C1532T	p.A511V	TAGGTTGCATCTT		236	4	0.02	295	1	0.0033898305		527	2	0	0				
DDX43	55510	mdanderson.org	37	6	74124407	74124407	+	Silent	SNP	A	A	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_018665	exon14	c.A1743G	p.A581A	AAGAGCAGGGTAA		58	3	0.05	63	0	0				18	0	0.00			
IBTK	25998	broad.mit.edu	37	6	82921250	82921251	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	IBTK	NM_015525	exon14	c.2331_2332insG	p.G777fs	TTCCTTTCCATCC		462	7	0.02	528	0	0		128		3	0	0.00			
ANKRD6	22881	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	90276740	90276740	+	Silent	SNP	C	C	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ANKRD6	NM_001242809	exon2	c.C45G	p.L15L	CCTTCTCGTAGCT		521	47	0.09	310	4	0.0129032258		51		1	0	0.00			
AIM1	202	broad.mit.edu	37	6	107009345	107009345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	AIM1	NM_001624	exon18	c.G4884T	p.W1628C	GATTTGGATCTAT		153	4	0.03	179	3	0.0167597765		161		12	0	0.00			
GPR6	2830	mdanderson.org	37	6	110300658	110300658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_005284	exon1	c.G343A	p.A115T	AGCCTGGCCACCG		48	3	0.06	44	0	0				2	0	0.00			
KIAA1919	91749	mdanderson.org	37	6	111580906	111580906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_153369	exon1	c.G3T	p.M1I	CTTGATGCTGTGT		62	5	0.08	44	1	0.0227272727				1	0	0.00			
SLC35F1	222553	broad.mit.edu	37	6	118596709	118596709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	SLC35F1,rectum,carcinoma,+1,2	SLC35F1	NM_001029858	exon5	c.G725T	p.R242L	TCATCCGAACTCT		233	6	0.03	238	0	0		65	2	2	0	0.00			
ALDH8A1	64577	broad.mit.edu	37	6	135239750	135239750	+	Missense_Mutation	SNP	C	C	T	rs148331222		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ALDH8A1	NM_022568	exon7	c.G1267A	p.V423M	ACCACACGGTAGC		227	6	0.03	249	0	0		68		0	0				
FUCA2	2519	broad.mit.edu	37	6	143825112	143825112	+	Silent	SNP	G	G	A	rs377166178		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FUCA2	NM_032020	exon3	c.C690T	p.D230D	TCCTCCGTCACCA		154	4	0.03	141	0	0		28		146	0	0.00			
SYTL3	94120	broad.mit.edu	37	6	159086520	159086520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SYTL3	NM_001242384	exon6	c.G204T	p.Q68H	CCAGCAGGTGCTG		135	3	0.02	169	0	0		49		0	0				
SLC22A2	6582	broad.mit.edu	37	6	160679540	160679540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLC22A2	NM_003058	exon1	c.G250T	p.A84S	GGGAGGCTTCGCC		97	5	0.05	116	1	0.0086206897		78		0	0				
PMS2	5395	broad.mit.edu	37	7	6026590	6026590	+	Silent	SNP	G	G	T	rs376046767	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PMS2	NM_000535	exon11	c.C1806A	p.A602A	CTGAGAGGCTGAC		221	3	0.01	197	0	0		88		13	0	0.00			
KLHL7	55975	broad.mit.edu	37	7	23213659	23213659	+	Silent	SNP	C	C	T	rs147111813	byfrequency	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	KLHL7_ENST00000339077,NS,carcinoma,0,2	KLHL7	NM_001031710	exon11	c.C1503T	p.Y501Y	ATATTACGATATT		281	5	0.02	221	0	0		102	2	21	0	0.00			
FAM221A	340277	broad.mit.edu	37	7	23731023	23731023	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_199136	exon4	c.G445T	p.G149X	TGTTCAGGATTCC		277	3	0.01	185	1	0.0054054054				44	0	0.00			
BBS9	27241	broad.mit.edu	37	7	33313525	33313525	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	BBS9	NM_014451	exon9	c.C973T	p.Q325X	GCCACCCAACTTC		171	5	0.03	135	0	0		194		9	0	0.00			
ELMO1	9844	broad.mit.edu	37	7	37264492	37264492	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ELMO1	NM_014800	exon9	c.C693A	p.H231Q	TTGCAGGTGTGGA		102	3	0.03	98	1	0.0102040816		141		12	0	0.00			
STARD3NL	0	broad.mit.edu	37	7	38254698	38254698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	STARD3NL	NM_032016	exon4	c.G373T	p.A125S	TGGTGGGCAATAG		105	4	0.04	88	0	0		35		92	0	0.00			
POU6F2	11281	broad.mit.edu	37	7	39500265	39500265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	POU6F2,NS,carcinoma,0,3	POU6F2	NM_007252	exon10	c.G1522T	p.A508S	GGACAGGCTCTCA		121	8	0.07	73	0	0		117	3	0	0				
STYXL1	51657	broad.mit.edu	37	7	75651171	75651171	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	STYXL1	NM_016086	exon4	c.A305T	p.K102I	CCACCTTTGCCAT		75	3	0.04	75	0	0		35		72	0	0.00			
ABCB4	5244	broad.mit.edu	37	7	87079377	87079377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ABCB4	NM_018850	exon8	c.C740A	p.A247D	TAAGCAGCTAGTT		231	3	0.01	264	0	0		177		1	0	0.00			
ADAM22	53616	broad.mit.edu	37	7	87737492	87737492	+	Splice_Site	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ADAM22	NM_021722	exon5	c.G392T	p.G131V	TTCAGGGAGGAGA		109	4	0.04	86	0	0		280		0	0				
PCOLCE	5118	broad.mit.edu	37	7	100205135	100205135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PCOLCE	NM_002593	exon7	c.C1001T	p.A334V	TCTGTGCCAGCAG		153	6	0.04	134	0	0		37		129	0	0.00			
SLC12A9	56996	mdanderson.org	37	7	100458783	100458783	+	Silent	SNP	G	G	A	rs376976514		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_020246	exon10	c.G1242A	p.L414L	GAAGCTGAACACA		53	3	0.06	70	0	0				40	0	0.00			
CUX1	1523	broad.mit.edu;mdanderson.org	37	7	101758516	101758516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CUX1	NM_181500	exon8	c.G670T	p.D224Y	TTATTTGACCTGA		123	5	0.04	134	2	0.0149253731		253		14	0	0.00			
LRRC17	10234	broad.mit.edu	37	7	102579955	102579955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	LRRC17	NM_005824	exon3	c.G851T	p.R284L	AACTTCGACCCAA		152	6	0.04	121	0	0		45		7	0	0.00			
IFRD1	3475	broad.mit.edu	37	7	112096081	112096081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	IFRD1,NS,carcinoma,+1,1	IFRD1	NM_001007245	exon4	c.G224T	p.G75V	AGGAAGGAACTCA		83	4	0.05	99	0	0		46	1	70	0	0.00			
CFTR	1080	broad.mit.edu	37	7	117188705	117188705	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CFTR	NM_000492	exon10	c.A1220T	p.E407V	TTGGGGAATTATT		206	6	0.03	191	1	0.0052356021		171		0	0				
CTTNBP2	83992	broad.mit.edu	37	7	117431590	117431590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CTTNBP2	NM_033427	exon4	c.C1660A	p.Q554K	GAGTTTGGGAGAG		235	4	0.02	247	2	0.008097166		200		0	0				
SND1	27044	mdanderson.org	37	7	127714713	127714713	+	Nonsense_Mutation	SNP	G	G	T	rs148173300	bycluster;by1000genomes;alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_014390	exon17	c.G1939T	p.E647X	TCTGCCGAGGAGG		50	3	0.06	47	0	0				324	1	0.00			
CCDC136	64753	broad.mit.edu	37	7	128446881	128446881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CCDC136	NM_022742	exon9	c.C1388T	p.T463M	GGGATACGGTGGC		196	4	0.02	174	0	0		170		7	0	0.00			
EPHB6	2051	mdanderson.org	37	7	142565385	142565385	+	Silent	SNP	G	G	T	rs8177153	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_004445	exon12	c.G1770T	p.P590P	GCTTCCGGAAAGA		47	3	0.06	54	0	0				5	0	0.00			
EPHA1	2041	broad.mit.edu	37	7	143094683	143094683	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	EPHA1	NM_005232	exon9	c.G1683A	p.L561L	AAGCAGCAAGGCT		231	3	0.01	238	0	0		193		35	0	0.00			
ZNF862	643641	broad.mit.edu	37	7	149543304	149543304	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZNF862	NM_001099220	exon3	c.C201T	p.G67G	GCTTGGCAGCGTC		240	4	0.02	281	0	0		97		0	0				
ATP6V0E2	155066	hgsc.bcm.edu	37	7	149571176	149571176	+	Missense_Mutation	SNP	C	C	T	rs11538585	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001100592	exon1	c.C169T	p.L57F	TTCGCCCTCCCGG		97	4	0.04	98	0	0				42	0	0.00			
MLL3	58508	broad.mit.edu	37	7	151873946	151873946	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MLL3	NM_170606	exon38	c.T8592A	p.D2864E	TTCTCCATCATTT		97	3	0.03	130	1	0.0076923077		1564		1	0	0.00			
RBM33	155435	broad.mit.edu	37	7	155534588	155534588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	RBM33_ENST00000401878,colon,carcinoma,0,2	RBM33	NM_053043	exon13	c.C2125T	p.R709C	AATTTGCGTGAAT		192	6	0.03	205	1	0.0048780488		157	2	7	0	0.00			
REEP4	80346	broad.mit.edu	37	8	21996273	21996273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	REEP4	NM_025232	exon7	c.C587A	p.T196N	TCCTCGGTGTCGC		101	4	0.04	66	0	0		13		210	0	0.00			
STC1	6781	broad.mit.edu	37	8	23702384	23702384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	STC1,NS,carcinoma,0,2	STC1	NM_003155	exon4	c.C643T	p.R215C	TGGTGCGTCTCCT		248	3	0.01	220	1	0.0045454545		49	2	19	0	0.00			
PPP2R2A	5520	broad.mit.edu	37	8	26221301	26221301	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	PPP2R2A_ENST00000380737,NS,malignant_melanoma,+1,1	PPP2R2A	NM_001177591	exon8	c.G897T	p.S299S	TATTTCGGATGTA		181	4	0.02	122	1	0.0081967213		44	1	136	0	0.00			
ADRA1A	148	broad.mit.edu	37	8	26721626	26721626	+	Silent	SNP	A	A	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ADRA1A	NM_033303	exon1	c.T861C	p.P287P	GAAAAAAGGCAGC		89	3	0.03	81	0	0		337		2	0	0.00			
UBXN8	7993	broad.mit.edu	37	8	30608867	30608867	+	RNA	DEL	A	A	-	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	UBXN8	.	.	.	.	TCTCTTAAAAAAA		96	7	0.07	67	0	0		13		0	0				
ANK1	286	broad.mit.edu	37	8	41580653	41580653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ANK1	NM_001142446	exon9	c.C998A	p.A333D	GTTTTGGCTTGGA		199	3	0.02	163	2	0.0122699387		497		2	0	0.00			
HOOK3	84376	broad.mit.edu	37	8	42829324	42829324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	HOOK3	NM_032410	exon13	c.G1308T	p.Q436H	AGGGCAGCTCACA		288	4	0.01	240	0	0		71		7	0	0.00			
PRKDC	5591	broad.mit.edu	37	8	48825096	48825096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	PRKDC,NS,carcinoma,-2,2	PRKDC	.	.	.	.	AACCATGCTATGT		172	7	0.04	140	4	0.0285714286		394	2	2	0	0.00			
PRKDC	5591	broad.mit.edu	37	8	48839866	48839866	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	PRKDC,NS,carcinoma,-1,2	PRKDC	.	.	.	.	ATTCAGGCCTACT		289	6	0.02	218	0	0		394	2	1	0	0.00			
SDCBP	6386	broad.mit.edu	37	8	59490720	59490720	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	SDCBP,NS,carcinoma,0,2	SDCBP	NM_001007067	exon6	c.G531T	p.V177V	CAAGGTGCTCAAA		261	8	0.03	168	3	0.0178571429		20	2	237	1	0.00			
C8orf44	56260	broad.mit.edu	37	8	67592032	67592032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	C8orf44	NM_019607	exon3	c.C323T	p.A108V	CTTTGGCCATCTT		193	3	0.02	140	2	0.0142857143		18		6	0	0.00			
CSPP1	79848	broad.mit.edu	37	8	68030987	68030987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CSPP1	NM_024790	exon13	c.G1613T	p.G538V	GTTCAGGAATGAT		1042	10	0.01	755	1	0.0013245033		129		12	0	0.00			
FSBP	100861412	broad.mit.edu	37	8	95444395	95444395	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FSBP	NM_001256141	exon2	c.C864A	p.R288R	CCGTAAGCGAATT		235	4	0.02	157	0	0		1		16	0	0.00			
BAALC	79870	broad.mit.edu	37	8	104153274	104153274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	BAALC	NM_001024372	exon1	c.G149T	p.G50V	CGGGCGGCCTGCA		140	8	0.06	101	2	0.0198019802		15		0	0				
DCAF13	25879	broad.mit.edu	37	8	104438341	104438341	+	Nonsense_Mutation	SNP	G	G	T	rs374721908	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DCAF13	NM_015420	exon4	c.G892T	p.E298X	GGAGACGAGGAAG		245	4	0.02	181	0	0		66		202	1	0.00			
NUDCD1	84955	broad.mit.edu	37	8	110308689	110308689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NUDCD1	NM_032869	exon3	c.C383A	p.T128N	GACAAGGTAACCC		226	4	0.02	187	0	0		58		45	0	0.00			
PKHD1L1	93035	broad.mit.edu	37	8	110457854	110457854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PKHD1L1	NM_177531	exon38	c.G5756T	p.R1919I	TTCTCAGAGGAAT		288	3	0.01	206	0	0		522		0	0				
PTP4A3	11156	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	142437898	142437898	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PTP4A3	NM_032611	exon4	c.C378T	p.Y126Y	GAAGTACGAGGAC		61	5	0.08	35	0	0		19		142	53	0.37			
NAPRT1	93100	broad.mit.edu	37	8	144658885	144658885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NAPRT1	NM_145201	exon6	c.C812A	p.A271D	ACAAAGGCTGCCC		113	3	0.03	110	1	0.0090909091		47		108	0	0.00			
DCAF10	79269	broad.mit.edu	37	9	37861267	37861267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DCAF10	NM_024345	exon7	c.G1442T	p.S481I	GCTTCAGCCCCGA		110	3	0.03	128	0	0		31		38	0	0.00			
MURC	347273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	103340815	103340815	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	MURC,caecum,carcinoma,0,1	MURC	NM_001018116	exon1	c.C390T	p.F130F	CAAATTCCGCGTG		234	25	0.11	210	1	0.0047619048		0	1	0	0				
RNF20	56254	broad.mit.edu	37	9	104307104	104307104	+	Missense_Mutation	SNP	G	G	T	rs372537878	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	RNF20,NS,carcinoma,+2,1	RNF20	NM_019592	exon6	c.G684T	p.E228D	ACAGGAGAATATG		66	3	0.05	78	0	0		110	1	19	0	0.00			
BSPRY	54836	broad.mit.edu;mdanderson.org	37	9	116116549	116116549	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	BSPRY	NM_017688	exon2	c.G231T	p.L77L	GAGGCTGCAGTTA		119	5	0.04	127	0	0		21		6	0	0.00			
CDK5RAP2	55755	broad.mit.edu	37	9	123292347	123292347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CDK5RAP2	NM_018249	exon8	c.C734A	p.S245Y	ATCTGAGATTTCT		171	6	0.04	153	1	0.0065359477		157		5	0	0.00			
C9orf117	286207	broad.mit.edu	37	9	130471761	130471761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	C9orf117	NM_001012502	exon2	c.G222T	p.E74D	GTTTGAGCAGCTG		166	5	0.03	177	1	0.0056497175		21		3	0	0.00			
NOTCH1	4851	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	9	139399283	139399283	+	Nonsense_Mutation	SNP	G	G	T	rs375196212	alternate_allele	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_017617	exon26	c.C4860A	p.Y1620X	GCGGCCGTAGTAG		71	4	0.06	56	0	0				13	0	0.00			
TUBB4B	10383	broad.mit.edu	37	9	140137426	140137426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	TUBB2C,bladder,carcinoma,0,1	.	NM_006088	exon4	c.G756T	p.K252N	GCGGAAGCTGGCT		57	6	0.11	70	1	0.0142857143			1	1870	86	0.05			
TUBBP5	0	broad.mit.edu	37	9	141069468	141069468	+	RNA	SNP	C	C	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	GCTTCTCCTGCCG		39	5	0.13	48	1	0.0208333333				0	0				
FRMPD4	9758	broad.mit.edu	37	X	12736057	12736057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FRMPD4	NM_014728	exon16	c.G3112A	p.A1038T	GGGAAGGCACCCC		259	7	0.03	131	2	0.0152671756		214		2	0	0.00			
GEMIN8	54960	broad.mit.edu	37	X	14027165	14027165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GEMIN8	NM_017856	exon5	c.C596A	p.A199D	ATCTCGGCCTGGC		323	3	0.01	163	0	0		19		125	0	0.00			
CA5BP1	0	broad.mit.edu	37	X	15711088	15711088	+	RNA	DEL	G	G	-	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	TCAGCTGCACTTA		1243	10	0.01	698	0	0				30	0	0.00			
REPS2	9185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	17047745	17047745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_004726	exon5	c.G770A	p.R257Q	TTATCCGGGTAAG		174	18	0.10	98	0	0				5	0	0.00			
NHS	4810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	17750309	17750309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_198270	exon8	c.G4618A	p.D1540N	AGCACCGATGATG		420	169	0.40	248	0	0				11	2	0.18			
KLHL15	80311	broad.mit.edu	37	X	24024352	24024352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KLHL15	NM_030624	exon3	c.G459T	p.K153N	GTCTAACTTCTCC		193	4	0.02	85	1	0.0117647059		50		4	0	0.00			
ARX	170302	broad.mit.edu	37	X	25033725	25033725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ARX	NM_139058	exon1	c.C130A	p.L44M	CTCCCAGCAACCG		204	4	0.02	103	0	0		19		1	0	0.00			
MAGEB3	4114	broad.mit.edu	37	X	30254694	30254694	+	Missense_Mutation	SNP	C	C	T	rs145982241	bycluster;byfrequency	TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MAGEB3	NM_002365	exon5	c.C653T	p.A218V	ACTGTGCCACTGA		182	5	0.03	104	0	0		54		0	0				
DMD	1756	broad.mit.edu	37	X	31196891	31196891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DMD	NM_004006	exon70	c.C10118A	p.A3373D	ACCTTGGCAAAGT		165	4	0.02	105	0	0		2127		10	0	0.00			
FAM47C	442444	broad.mit.edu	37	X	37028069	37028069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	FAM47C	NM_001013736	exon1	c.T1586C	p.I529T	CCAAGATTCTGGT		114	6	0.05	63	1	0.0158730159		267		0	0				
ZNF41	7592	broad.mit.edu	37	X	47315340	47315340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZNF41	NM_007130	exon4	c.C275T	p.A92V	TGTGGGGCTTCCC		233	4	0.02	115	1	0.0086956522		71		1	0	0.00			
KDM5C	8242	broad.mit.edu	37	X	53227713	53227713	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	KDM5C	NM_004187	exon17	c.C2475T	p.C825C	GGACACGCAAGCC		356	6	0.02	158	0	0		385		81	0	0.00			
HUWE1	10075	broad.mit.edu	37	X	53572039	53572039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	HUWE1	NM_031407	exon71	c.C10999A	p.P3667T	CCTCAGGCAGGCC		175	3	0.02	88	0	0		724		158	0	0.00			
WNK3	65267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54285766	54285766	+	Silent	SNP	T	T	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001002838	exon11	c.A2043G	p.V681V	TTGGGATACAGGC		115	36	0.31	61	0	0				1	0	0.00			
GNL3L	54552	broad.mit.edu	37	X	54584983	54584983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GNL3L	NM_001184819	exon15	c.G1561T	p.D521Y	TCAGTGGACCGCC		162	4	0.02	90	2	0.0222222222		73		27	0	0.00			
SPIN4	139886	broad.mit.edu	37	X	62570276	62570276	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SPIN4	NM_001012968	exon1	c.C423A	p.V141V	CGCCAGGACCATA		249	4	0.02	153	0	0		29		5	0	0.00			
AMER1	139285	broad.mit.edu	37	X	63412939	63412939	+	Silent	SNP	T	T	C	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_152424	exon2	c.A228G	p.G76G	GCTCCGTCCCCCT		270	7	0.03	101	1	0.0099009901				0	0				
PJA1	64219	broad.mit.edu	37	X	68382256	68382257	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PJA1	NM_145119	exon2	c.826_827insT	p.D276_T277delinsX	CAGTATCAAAAAA		181	7	0.04	94	0	0		106		73	0	0.00			
P2RY4	5030	broad.mit.edu	37	X	69478692	69478692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	P2RY4	NM_002565	exon1	c.C783A	p.F261L	GATGTGGAAAGGC		186	3	0.02	81	0	0		39		0	0				
SLC7A3	84889	broad.mit.edu	37	X	70146767	70146767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLC7A3	NM_032803	exon9	c.C1411A	p.P471T	AGAGTGGAGTGGG		261	5	0.02	121	0	0		76		454	0	0.00			
ZMYM3	9203	broad.mit.edu	37	X	70470506	70470506	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ZMYM3	NM_005096	exon5	c.G849A	p.R283R	CCGGGGCCGGAAT		237	3	0.01	131	0	0		137		22	0	0.00			
RPS6KA6	27330	broad.mit.edu	37	X	83360833	83360833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	RPS6KA6	NM_014496	exon16	c.C1417T	p.R473C	CATAGCGCATCAA		530	5	0.01	327	0	0		116		0	0				
SATL1	340562	broad.mit.edu	37	X	84362715	84362715	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SATL1	NM_001012980	exon1	c.C1260A	p.G420G	GCTCAGGCCTGTT		284	4	0.01	154	0	0		70		0	0				
SATL1	340562	broad.mit.edu	37	X	84363309	84363309	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SATL1	NM_001012980	exon1	c.C666A	p.V222V	GCTGGGGACTTGC		174	3	0.02	113	0	0		70		0	0				
NXF5	55998	broad.mit.edu	37	X	101096670	101096671	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NXF5	NM_032946	exon5	c.216_217insA	p.K72fs	ATAAATCTTATAA		659	5	0.01	337	0	0		65		0	0				
SLC25A53	401612	broad.mit.edu	37	X	103349555	103349555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	NM_001012755	exon2	c.C386A	p.A129D	GCCACGGCCTCCA		123	3	0.02	68	1	0.0147058824				0	0				
NXT2	55916	broad.mit.edu	37	X	108784834	108784834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	NXT2	NM_018698	exon4	c.G398A	p.C133Y	TAGATTGCCAACC		265	4	0.02	127	0	0		16		15	0	0.00			
ALG13	79868	broad.mit.edu	37	X	110970932	110970933	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	ALG13	NM_001099922	exon18	c.2181_2182insT	p.G727fs	CAGGGGCTTGGAA		369	7	0.02	217	0	0		230		9	0	0.00			
DCAF12L1	139170	broad.mit.edu	37	X	125686305	125686305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DCAF12L1	NM_178470	exon1	c.C287T	p.T96M	TTGACCGTGCCCA		292	3	0.01	153	0	0		135		1	0	0.00			
GPR112	139378	broad.mit.edu	37	X	135405334	135405334	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	GPR112	NM_153834	exon5	c.G468T	p.G156G	TCATGGGACTCTG		222	4	0.02	128	0	0		459		0	0				
MIR320D2	0	broad.mit.edu	37	X	140008380	140008380	+	RNA	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	.	.	.	.	.	TGGGAAGAGAAGG		781	7	0.01	495	1	0.002020202				0	0				
SLITRK4	139065	broad.mit.edu	37	X	142717464	142717464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	SLITRK4	NM_001184750	exon2	c.C1461A	p.S487R	AGGCAGGCTCTTT		258	3	0.01	109	0	0		162		5	0	0.00			
MAGEA11	4110	broad.mit.edu	37	X	148797652	148797653	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	MAGEA11	NM_005366	exon5	c.506_507insA	p.P169fs	AGTCACCAAGTCC		376	7	0.02	194	0	0		86		2	0	0.00			
CNGA2	1260	broad.mit.edu	37	X	150908187	150908187	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	CNGA2	NM_005140	exon4	c.C357T	p.G119G	GGATGGCGAGGAC		148	4	0.03	90	0	0		136		0	0				
PNMA5	114824	broad.mit.edu	37	X	152159584	152159584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	PNMA5	NM_001103150	exon2	c.C559A	p.P187T	ATATGGGCATTAT		148	3	0.02	91	0	0		63		0	0				
DUSP9	1852	broad.mit.edu	37	X	152914704	152914704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DUSP9	NM_001395	exon3	c.C391A	p.Q131K	AGATTCCAGGCCG		64	4	0.06	27	0	0		41		14	0	0.00			
G6PD	2539	broad.mit.edu	37	X	153760882	153760882	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	G6PD	NM_000402	exon10	c.C1277A	p.P426H	TCGTTGGGCTGCA		230	6	0.03	96	0	0		73		209	2	0.01			
USP9Y	8287	broad.mit.edu	37	Y	14902338	14902338	+	Splice_Site	SNP	A	A	G	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	USP9Y	NM_004654	exon25	c.3562-2A>G	.	TTTTTCAGATTAA		202	4	0.02	236	0	0		49		0	0				
DDX3Y	8653	broad.mit.edu	37	Y	15026886	15026886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8A8-01A-11D-A435-10	TCGA-VF-A8A8-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0ba322ae-bd9f-45e8-8ec4-c7fb54e5f18d	28cabae0-04dd-4dda-b578-da9b77c757d6	.	DDX3Y	NM_004660	exon9	c.G850T	p.A284S	GAGGAAGCCAGAA		100	3	0.03	153	0	0		13		16	0	0.00			
