Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
ZBTB48	3104	mdanderson.org	37	1	6646792	6646792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	ZBTB48	NM_005341	exon5	c.G1082T	p.R361L	TCCGCCGAAGGAT		56	3	0.05	62	0	0		33		82	0	0.00			
PADI2	11240	mdanderson.org	37	1	17431436	17431436	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	PADI2	NM_007365	exon2	c.C213A	p.L71L	GGGCGAGAGAAGC		39	3	0.08	38	0	0		72		40	0	0.00			
PADI2	11240	mdanderson.org	37	1	17431515	17431515	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	PADI2	NM_007365	exon2	c.C134A	p.S45X	TGTTCCGAGTGCT		50	3	0.06	47	0	0		72		40	0	0.00			
KIF17	57576	mdanderson.org	37	1	21031250	21031250	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	KIF17	NM_020816	exon5	c.C813A	p.G271G	GACATTGCCCAGT		50	3	0.06	52	0	0		130		5	0	0.00			
RPS6KA1	6195	mdanderson.org	37	1	26898408	26898408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	RPS6KA1	NM_001006665	exon18	c.G1848T	p.M616I	CACCATGCTGGCA		34	3	0.09	16	0	0		65		215	0	0.00			
MECR	51102	bcgsc.ca	37	1	29542572	29542572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	MECR	NM_016011	exon3	c.C351A	p.S117R	CACATTGCTGCCC		134	7	0.05	124	0	0		31		75	0	0.00			
TCHH	7062	hgsc.bcm.edu	37	1	152082320	152082320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	TCHH,NS,carcinoma,0,5	TCHH	NM_007113	exon3	c.A3373G	p.R1125G	CCTCTCTCAGCAG		120	7	0.06	85	1	0.0117647059		0	5	0	0				
GON4L	54856	ucsc.edu	37	1	155726782	155726782	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	GON4L	NM_001037533	exon27	c.G5484A	p.R1828R	TTTTTTCCTCTTG		194	1	0.01	132	0	0		392		76	12	0.16			
SNAP47	116841	mdanderson.org	37	1	227947187	227947187	+	Splice_Site	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	SNAP47	NM_053052	exon3	c.1123+1G>T	.	ATGCAGGTTAGTG		80	4	0.05	77	0	0		42		0	0				
JMJD1C	221037	broad.mit.edu	37	10	64958278	64958278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	JMJD1C	NM_032776	exon12	c.A5486G	p.K1829R	CCATCCTTTTTCA		118	3	0.03	129	0	0		347		31	0	0.00			
CNNM1	26507	broad.mit.edu	37	10	101124187	101124187	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	CNNM1,extremity,malignant_melanoma,0,1	CNNM1	NM_020348	exon5	c.T2042G	p.V681G	TGGAGGTGGAGGT		45	11	0.24	49	10	0.2040816327		101	1	0	0				
MUC2	4583	mdanderson.org	37	11	1093304	1093304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	MUC2	NM_002457	exon30	c.C5123T	p.T1708I	CGGTGACCCCAAC		33	3	0.09	27	0	0		614		0	0				
MOB2	81532	broad.mit.edu	37	11	1501963	1501963	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	MOB2	NM_001172223	exon2	c.C263G	p.A88G	TTGCTGGCCAGCC		65	8	0.12	84	4	0.0476190476		23		65	1	0.02			
EIF3F	8665	mdanderson.org	37	11	8013657	8013657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	EIF3F	NM_003754	exon3	c.G462T	p.K154N	TGCTAAGAATATG		39	3	0.08	41	0	0		23		229	0	0.00			
SBF2	81846	mdanderson.org	37	11	9801975	9801975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	SBF2	NM_030962	exon40	c.C5540A	p.S1847Y	GCATCAGAGATAC		53	3	0.06	60	0	0		146		40	0	0.00			
FOLH1	2346	bcgsc.ca	37	11	49204790	49204790	+	Silent	SNP	A	A	G	rs76509850	bycluster;byfrequency	TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	FOLH1	NM_004476	exon7	c.T831C	p.Y277Y	ATAAGCATATTCT		167	12	0.07	196	0	0		141		3	0	0.00			
OR5F1	338674	mdanderson.org	37	11	55761334	55761334	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	OR5F1	NM_003697	exon1	c.C768A	p.I256I	AGTATAGATGCAG		92	4	0.04	92	0	0		116		0	0				
MED19	219541	mdanderson.org	37	11	57479594	57479594	+	Missense_Mutation	SNP	C	C	T	rs202123309	by1000genomes;alternate_allele	TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	MED19	NM_153450	exon1	c.G58A	p.A20T	CGAGTGCGGTTGG		62	3	0.05	71	0	0		15		17	0	0.00			
DDB1	1642	broad.mit.edu	37	11	61071379	61071379	+	Silent	SNP	C	C	A	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	DDB1	NM_001923	exon22	c.G2790T	p.V930V	CAGCAGCACTGAG		111	7	0.06	109	2	0.0183486239		100		838	11	0.01			
PITPNM1	9600	mdanderson.org	37	11	67265611	67265611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	PITPNM1	NM_001130848	exon11	c.G1667T	p.C556F	TGCCCACAGAAGC		24	2	0.08	30	0	0		84		57	0	0.00			
FAM181B	220382	mdanderson.org	37	11	82443763	82443763	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	FAM181B	NM_175885	exon1	c.C1009A	p.L337M	CAGTCAGGGGGCT		49	3	0.06	49	0	0		14		0	0				
FGF23	8074	mdanderson.org	37	12	4488714	4488714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	FGF23	NM_020638	exon1	c.C35A	p.A12D	CACAAGGCACAGA		34	4	0.12	27	0	0		57		0	0				
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	TUBA1C,colon,carcinoma,0,1	TUBA1C	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG		312	27	0.09	227	19	0.0837004405		32	1	1918	1010	0.53			
NAV3	89795	bcgsc.ca;mdanderson.org	37	12	78513322	78513322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	NAV3	NM_014903	exon15	c.G3346T	p.G1116C	TTGGACGGTTCAC		126	5	0.04	110	0	0		506		0	0				
SART3	9733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	108938917	108938917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_014706	exon4	c.C727T	p.R243W	TCACCCGAGCAGC		193	49	0.25	198	0	0				63	18	0.29			
OAS1	4938	broad.mit.edu	37	12	113354329	113354329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	OAS1	NM_001032409	exon4	c.G670T	p.G224W	AAGCTTGGGAAGC		132	4	0.03	115	0	0		128		188	0	0.00			
RASAL1	8437	mdanderson.org	37	12	113565942	113565942	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	RASAL1	NM_001193520	exon4	c.A164G	p.E55G	TACTCCTCCCCCC		47	3	0.06	44	0	0		89		5	0	0.00			
TPCN1	53373	mdanderson.org	37	12	113714756	113714756	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	TPCN1	NM_001143819	exon12	c.C1191T	p.D397D	CAATGACATTGAG		48	3	0.06	48	0	0		109		60	4	0.07			
EP400	57634	hgsc.bcm.edu	37	12	132547105	132547105	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_015409	exon47	c.G8193A	p.Q2731Q	GCAGCAGCAGCAG		101	9	0.09	96	0	0				33	0	0.00			
HSPH1	10808	mdanderson.org	37	13	31727066	31727066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	HSPH1	NM_006644	exon5	c.C452A	p.A151D	CTCTCAGCATCTG		50	3	0.06	67	0	0		65		72	0	0.00			
MIR1247	100302145	mdanderson.org	37	14	102026686	102026686	+	RNA	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	.	.	.	.	CCCGGGGTAGAGA		31	3	0.10	29	0	0				0	0				
SPPL2A	84888	mdanderson.org	37	15	51028300	51028300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	SPPL2A	NM_032802	exon8	c.C930A	p.D310E	ATACCTGTCTTCA		25	2	0.08	39	0	0		26		186	0	0.00			
ACAN	176	bcgsc.ca	37	15	89395085	89395085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	ACAN	NM_001135	exon11	c.G2087T	p.G696V	CCTCTGGTGTGGA		154	6	0.04	203	1	0.0049261084		220		1	0	0.00			
HAPLN3	145864	mdanderson.org	37	15	89422428	89422428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	HAPLN3	NM_178232	exon4	c.C566T	p.A189V	TGCTCTGCACAGA		47	3	0.06	67	0	0		43		83	1	0.01			
WFIKKN1	117166	mdanderson.org	37	16	683468	683468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	WFIKKN1	NM_053284	exon2	c.G1058T	p.R353L	GTGCCCGCGGCCC		9	2	0.22	8	0	0		30		2	0	0.00			
PKD1	5310	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	2156409	2156409	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_000296	exon18	c.C7479G	p.F2493L	GCATTCGAAGTGC		32	6	0.19	27	0	0				10	4	0.40			
C16orf88	400506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19722702	19722702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	C16orf88,NS,carcinoma,0,1	C16orf88	NM_001012991	exon3	c.A979G	p.I327V	GGTCTATGTGCGC		100	14	0.14	123	0	0		0	1	83	18	0.22			
ACSM2A	123876	broad.mit.edu	37	16	20492208	20492208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	ACSM2A	NM_001010845	exon13	c.G1474A	p.A492T	GAGACGGCTGTGA		186	7	0.04	188	0	0		120		0	0				
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47630436	47630436	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_000293	exon13	c.C1357G	p.L453V	GCAAAACTCCTGG		134	16	0.12	119	0	0				21	1	0.05			
SLC12A3	6559	mdanderson.org	37	16	56919268	56919268	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	SLC12A3	NM_001126108	exon15	c.G1917T	p.K639N	CATCAAGAACTAC		35	3	0.09	54	0	0		99		0	0				
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	89345676	89345677	+	Missense_Mutation	DNP	TC	TC	AA	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	TC	TC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_001256183	exon9	c.G7273T	p.D2425F	ATGGCATCCAGCT		131	15	0.11	107	0	0				133	7	0.05			
CLUH	23277	broad.mit.edu	37	17	2598369	2598369	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	KIAA0664_ENST00000322335,NS,carcinoma,0,2	.	NM_015229	exon16	c.C2517A	p.A839A	GATGGCGGCTGAG		52	3	0.06	59	1	0.0169491525			2	115	0	0.00			
SPNS3	201305	broad.mit.edu;mdanderson.org	37	17	4351498	4351498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	SPNS3	NM_182538	exon6	c.G670T	p.V224F	CTGCTGGTTCCAG		52	4	0.08	64	0	0		52		0	0				
ACAP1	9744	mdanderson.org	37	17	7252473	7252473	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	ACAP1	NM_014716	exon18	c.A1838T	p.Q613L	TGATCCAGGCCAC		56	3	0.05	54	0	0		66		126	0	0.00			
FGF11	2256	mdanderson.org	37	17	7345131	7345131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	FGF11	NM_004112	exon3	c.T341C	p.V114A	GTGTGGTCACCAT		61	3	0.05	66	0	0		14		13	0	0.00			
MYOCD	93649	mdanderson.org	37	17	12649289	12649289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	MYOCD_ENST00000425538,NS,carcinoma,0,2	MYOCD	NM_153604	exon9	c.G1025T	p.S342I	CACTGAGCAATAC		128	5	0.04	140	0	0		291	2	1	0	0.00			
FLJ36000	0	broad.mit.edu	37	17	21909166	21909167	+	RNA	DEL	TG	TG	-	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	.	.	.	.	TTCCTCTGTGTGT		7	3	0.43	5	0	0				1	0	0.00			
TMEM97	27346	ucsc.edu	37	17	26653806	26653806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	TMEM97	NM_014573	exon3	c.G518A	p.R173K	AGAAAAGAAAAAA		57	3	0.05	61	1	0.0163934426		27		65	11	0.17			
.	0	broad.mit.edu	37	17	29369597	29369598	+	RNA	INS	-	-	CA	rs140197488	by1000genomes	TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	.	.	.	.	TTGCAAGCACACA		7	2	0.29	5	0	0				0	0				
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274360	39274360	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	KRTAP4-11,NS,carcinoma,0,1	KRTAP4-11	NM_033059	exon1	c.T208A	p.C70S	AGATGCAGCATCT		34	4	0.12	34	2	0.0588235294		0	1	0	0				
KRTAP4-12	83755	mdanderson.org	37	17	39280273	39280273	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	KRTAP4-12	NM_031854	exon1	c.C102A	p.T34T	GCAGCAGGTGGTC		56	6	0.11	45	1	0.0222222222		32		0	0				
CLTC	1213	bcgsc.ca	37	17	57746271	57746271	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	CLTC	NM_004859	exon14	c.C2262T	p.Y754Y	CTGCTACGATCCT		46	4	0.09	31	0	0		124		135	0	0.00			
GREB1L	80000	mdanderson.org	37	18	19079853	19079853	+	Missense_Mutation	SNP	A	A	T	rs4800747	bycluster;byhapmap;by1000genomes;alternate_allele	TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	GREB1L	NM_001142966	exon22	c.A3555T	p.E1185D	GCAGGAATGTGAC		58	2	0.03	58	0	0		69		1	0	0.00			
DSG1	1828	broad.mit.edu	37	18	28934743	28934743	+	Missense_Mutation	SNP	G	G	T	rs201083341	bycluster;by1000genomes	TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	DSG1	NM_001942	exon15	c.G2584T	p.V862L	TCAAACGTGGTAG		121	4	0.03	143	0	0		176		0	0				
GALR1	2587	mdanderson.org	37	18	74962795	74962795	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	GALR1	NM_001480	exon1	c.G291T	p.A97A	GTACGCGCTGCCC		40	3	0.08	46	0	0		53		0	0				
CHAF1A	10036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	4409387	4409387	+	Silent	SNP	C	C	T	rs188842259	bycluster;by1000genomes	TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_005483	exon3	c.C591T	p.G197G	GAGAGGCGACTCC		120	9	0.08	82	0	0	0			60	11	0.18			
MUC16	94025	mdanderson.org	37	19	9059459	9059459	+	Missense_Mutation	SNP	G	G	T	rs201658687		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	MUC16	NM_024690	exon3	c.C27987A	p.S9329R	TGTTCTGCTAGAA		99	5	0.05	79	0	0		4315		0	0				
ZNF700	90592	hgsc.bcm.edu	37	19	12060269	12060269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_001271848	exon4	c.A1439G	p.K480R	AATGTAAGGAATG		83	4	0.05	66	0	0				25	0	0.00			
ATP13A1	57130	mdanderson.org	37	19	19770791	19770791	+	Silent	SNP	G	G	A	rs111834843	bycluster;byfrequency;by1000genomes	TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	ATP13A1,colon,carcinoma,0,1	ATP13A1	NM_020410	exon2	c.C402T	p.Y134Y	GGGGTCGTACTCC		55	3	0.05	40	0	0	0.002	82	1	80	0	0.00			
.	0	broad.mit.edu	37	19	20242380	20242381	+	RNA	DEL	TT	TT	-	rs373507394	alternate_allele	TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	TT	TT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	.	.	.	.	TTCTTCTTTTTTT		6	2	0.33	6	0	0				0	0				
MEGF8	1954	mdanderson.org	37	19	42861670	42861670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	MEGF8	NM_001271938	exon28	c.C4945A	p.L1649M	CAGCAGCTGCTGG		47	3	0.06	56	0	0		358		7	0	0.00			
ATF5	22809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50434258	50434258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_012068	exon3	c.C151T	p.L51F	GGCGGGCTTCCAG		66	14	0.21	86	0	0				220	9	0.04			
TRIM28	10155	mdanderson.org	37	19	59059871	59059871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	TRIM28,NS,carcinoma,+1,1	TRIM28	NM_005762	exon9	c.G1235A	p.R412H	CAGAGCGTCCTGG		57	3	0.05	60	0	0		46	1	1373	0	0.00			
ANKRD36BP2	0	broad.mit.edu	37	2	89082294	89082295	+	RNA	INS	-	-	TT	rs368332037	bycluster	TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	.	.	.	.	AGTCTCATATGTT		7	3	0.43	7	0	0				0	0				
ANKRD36BP2	0	broad.mit.edu	37	2	89082296	89082297	+	RNA	INS	-	-	TC	rs370959214		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	.	.	.	.	TCTCATATGTTGA		7	3	0.43	7	0	0				0	0				
ANKRD36BP2	0	broad.mit.edu	37	2	89082340	89082343	+	RNA	DEL	ATTG	ATTG	-	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	ATTG	ATTG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	.	.	.	.	TCATGTATTGATT		5	2	0.40	13	0	0				0	0				
ANKRD36BP2	0	broad.mit.edu	37	2	89082352	89082353	+	RNA	INS	-	-	T	rs369392603		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	.	.	.	.	TATTTTGTTTCAA		5	2	0.40	16	0	0				0	0				
RAB3GAP1	22930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135920150	135920150	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_001172435	exon20	c.A2315T	p.K772I	TCCAGAAACCTGC		113	11	0.10	116	0	0				118	3	0.03			
SLC38A11	151258	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	165793940	165793940	+	Splice_Site	SNP	C	C	G	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	SLC38A11,colon,carcinoma,0,1	SLC38A11	NM_173512	exon6	c.304-1G>C	.	GGAGACCTGTAAA		55	6	0.11	46	0	0		41	1	0	0				
SP140L	93349	mdanderson.org	37	2	231193483	231193483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	SP140L	NM_138402	exon2	c.G44T	p.G15V	TGAACGGAGGTGT		87	4	0.05	106	0	0		68		20	0	0.00			
DIDO1	11083	mdanderson.org	37	20	61525294	61525294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	DIDO1	NM_033081	exon12	c.C2825A	p.P942Q	TCCAGCGGGGAGG		65	3	0.05	45	0	0		321		12	0	0.00			
MICAL3	57553	broad.mit.edu	37	22	18273827	18273832	+	In_Frame_Del	DEL	GCTCCC	GCTCCC	-	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	GCTCCC	GCTCCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	MICAL3	NM_015241	exon31	c.5756_5761del	p.1919_1921del	GCTCCAGCTCCCG		59	9	0.15	46	0	0		53		21	0	0.00			
ZNF74	7625	mdanderson.org	37	22	20760070	20760070	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	ZNF74	NM_001256524	exon6	c.G747T	p.V249V	GTTCGTGTGCGGC		45	3	0.07	37	0	0		54		20	0	0.00			
ZNF74	7625	mdanderson.org	37	22	20760418	20760418	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	ZNF74	NM_001256524	exon6	c.C1095T	p.C365C	CGAGTGCGGCAAG		66	5	0.08	59	0	0		54		25	0	0.00			
AIFM3	150209	mdanderson.org	37	22	21334370	21334370	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	AIFM3	NM_001146288	exon19	c.G1732T	p.E578X	GTCGCTGAGGTGC		41	3	0.07	31	0	0		49		9	0	0.00			
FAM83F	113828	hgsc.bcm.edu	37	22	40391306	40391307	+	In_Frame_Ins	INS	-	-	CAAGGC	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	FAM83F	NM_138435	exon1	c.260_261insCAAGGC	p.S87delinsSKA	GCAAGAGCAAGGC		20	10	0.50	9	0	0		29		2	0	0.00			
PPP6R2	9701	mdanderson.org	37	22	50845165	50845165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	PPP6R2	NM_001242899	exon4	c.T275C	p.I92T	CGCAGATCAGCGA		56	3	0.05	44	0	0		71		58	0	0.00			
GRIP2	80852	broad.mit.edu	37	3	14575374	14575374	+	RNA	DEL	T	T	-	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	GRIP2	.	.	.	.	CATCTCTTTTCCC		6	2	0.33	7	0	0		68		0	0				
NBEAL2	23218	mdanderson.org	37	3	47036675	47036675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	NBEAL2	NM_015175	exon13	c.G1450T	p.A484S	TGCCCTGCCAGCC		70	11	0.16	50	4	0.08		267		16	0	0.00			
SPINK8	646424	bcgsc.ca;mdanderson.org	37	3	48362556	48362556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	SPINK8	NM_001080525	exon2	c.C76A	p.L26I	TAGGAAGGGGGAA		78	5	0.06	75	0	0		5		0	0				
CAMKV	79012	broad.mit.edu	37	3	49897047	49897047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	CAMKV	NM_024046	exon11	c.C1210A	p.P404T	TGGCTGGGGTGAC		133	5	0.04	153	0	0		84		4	0	0.00			
FAM194A	131831	mdanderson.org	37	3	150421549	150421549	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	FAM194A,NS,carcinoma,+1,1	FAM194A	NM_152394	exon1	c.A137T	p.E46V	ACCTCTTCCTCCT		54	8	0.15	44	3	0.0681818182		91	1	0	0				
SPINK2	6691	mdanderson.org	37	4	57687798	57687798	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	SPINK2	NM_001271722	exon1	c.C31A	p.L11M	GGAGCAGCAGCGC		48	3	0.06	33	0	0		12		7	0	0.00			
TRIO	7204	mdanderson.org	37	5	14369582	14369582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	TRIO	NM_007118	exon18	c.G3166T	p.V1056L	GACCACGTGACGC		49	3	0.06	49	0	0		305		7	0	0.00			
NPR3	4883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	32712263	32712263	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_000908	exon1	c.G381A	p.K127K	CGCCAAGCCAGAC		109	22	0.20	139	0	0				0	0				
MAP1B	4131	mdanderson.org	37	5	71482492	71482492	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	MAP1B	NM_005909	exon4	c.G421T	p.G141W	CTGACCGGGCAGT		64	3	0.05	90	0	0		243		1	0	0.00			
EIF4E1B	253314	broad.mit.edu	37	5	176070126	176070128	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	AGA	AGA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	EIF4E1B	NM_001099408	exon4	c.59_61del	p.20_21del	AGGAGGAGAAGGA		153	8	0.05	143	0	0		24		0	0				
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	83847668	83847668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_015018	exon21	c.G3907T	p.A1303S	AAACTTGCCAGAA		53	7	0.13	69	0	0				8	0	0.00			
SOGA3	387104	mdanderson.org	37	6	127796588	127796588	+	Missense_Mutation	SNP	G	G	T	rs374876819		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	C6orf174,bladder,carcinoma,0,2	.	NM_001012279	exon6	c.C2583A	p.D861E	GCTGCCGTCGTCC		53	3	0.06	56	0	0			2	1	0	0.00			
SCAF8	22828	hgsc.bcm.edu	37	6	155153803	155153803	+	Silent	SNP	T	T	C	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	NM_014892	exon20	c.T3090C	p.P1030P	TAGACCTCCCCCT		104	5	0.05	79	0	0				127	2	0.02			
RBAK	57786	mdanderson.org	37	7	5104859	5104859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	RBAK	NM_021163	exon5	c.G1772T	p.G591V	ACACAGGCGAGAA		44	4	0.09	38	0	0		82		8	0	0.00			
STK17A	9263	mdanderson.org	37	7	43622932	43622932	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	STK17A	NM_004760	exon1	c.G90A	p.P30P	CGGGCCGTGCCGG		26	2	0.08	31	0	0		31		2	0	0.00			
MAGI2	9863	mdanderson.org	37	7	77762375	77762375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	MAGI2	NM_012301	exon18	c.C3034A	p.L1012I	TGTTGAGCTCTGC		38	3	0.08	35	0	0		246		0	0				
MGC72080	0	hgsc.bcm.edu	37	7	97599706	97599706	+	RNA	SNP	T	T	G	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	.	.	.	.	TTTTTTTTGGAGA		174	16	0.09	176	0	0				1	0	0.00			
NKX2-6	137814	mdanderson.org	37	8	23560024	23560024	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	NKX2-6	NM_001136271	exon2	c.C846A	p.G282G	ATTCTGGCCACCG		17	2	0.12	21	0	0		6		0	0				
FAM49B	51571	mdanderson.org	37	8	130863111	130863111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	FAM49B	NM_001256763	exon10	c.C683A	p.A228D	ACACTAGCCATTG		46	3	0.07	48	0	0		36		323	0	0.00			
FAM166B	730112	mdanderson.org	37	9	35562684	35562684	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	FAM166B	NM_001164310	exon4	c.C506A	p.S169Y	TCCATGGAGTAGG		51	3	0.06	66	0	0		19		0	0				
ND6	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	14179	14179	+	Silent	SNP	A	A	G	rs28357671	bycluster;byfrequency;alternate_allele	TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	ENST00000361681	exon1	c.T495C	p.Y165Y	TACAATATATACA		13	6	0.46	21	0	0				0	0				
CYTB	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	14804	14804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	.	ENST00000361789	exon1	c.G58A	p.D20N	TTCATCGACCTCC		77	17	0.22	84	0	0				0	0				
HAUS7	55559	mdanderson.org	37	X	152734605	152734605	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AB-01A-31D-A435-10	TCGA-VF-A8AB-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01d47985-e09b-4438-8c1b-820be9a3e0e3	16586582-b7cd-44b0-8494-76745a479e35	.	HAUS7	NM_017518	exon2	c.C253A	p.R85R	ATTACCGGGTACA		57	3	0.05	48	0	0		44		106	0	0.00			
