Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
SLC25A34	284723	mdanderson.org	37	1	16062988	16062988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_207348	exon1	c.C8T	p.T3M	TGGAGACGGTGCC		22	3	0.14	30	0	0				0	0				
SZRD1	26099	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	16719757	16719757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	SZRD1	NM_001114600	exon3	c.G136T	p.V46L	CCCATTGTGATTC		158	7	0.04	113	0	0		1		113	0	0.00			
FAM43B	163933	mdanderson.org	37	1	20880251	20880251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_207334	exon1	c.G785T	p.S262I	TCAGCAGCATCCA		12	3	0.25	9	0	0				0	0				
KIF17	57576	mdanderson.org	37	1	20996952	20996952	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_020816	exon13	c.C2755A	p.R919S	TTTTGCGGGCTGG		56	3	0.05	60	0	0				40	0	0.00			
ZBTB8OS	339487	broad.mit.edu	37	1	33099658	33099658	+	Silent	SNP	T	T	C	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	ZBTB8OS	NM_178547	exon3	c.A174G	p.G58G	AGTATCTCCCCAT		171	3	0.02	177	0	0		9		216	0	0.00			
EVA1B	55194	mdanderson.org	37	1	36788239	36788239	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_018166	exon3	c.C155A	p.S52X	GCCCACGAGATGC		43	3	0.07	21	0	0				68	0	0.00			
SZT2	23334	bcgsc.ca;mdanderson.org	37	1	43906994	43906994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	SZT2	NM_015284	exon52	c.G7283A	p.R2428Q	GTGTTCGGACTCC		93	5	0.05	89	0	0		383		48	0	0.00			
CHI3L1	1116	bcgsc.ca	37	1	203148983	203148983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	CHI3L1	NM_001276	exon9	c.C917A	p.A306D	ACTGTGGCTCCGC		86	5	0.06	88	1	0.0113636364		51		1	0	0.00			
TAF5L	27097	broad.mit.edu	37	1	229737976	229737976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	TAF5L	NM_001025247	exon4	c.G938A	p.R313H	TGGATGCGGGACA		222	5	0.02	194	1	0.0051546392		76		46	0	0.00			
EDARADD	128178	mdanderson.org	37	1	236631562	236631562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_145861	exon5	c.G251T	p.G84V	GCACTGGAGATCC		93	5	0.05	82	0	0				0	0				
EPC1	80314	broad.mit.edu	37	10	32575641	32575641	+	Silent	SNP	G	G	T	rs143299306	alternate_allele	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	EPC1	NM_001272004	exon9	c.C1372A	p.R458R	CAACCCGTCTTCG		120	4	0.03	121	1	0.0082644628		74		28	0	0.00			
LOC100129055	0	broad.mit.edu	37	10	38468803	38468803	+	RNA	DEL	T	T	-	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	.	.	.	.	GTGACCTTTTTTT		6	4	0.67	7	0	0				0	0				
FLJ31813	0	broad.mit.edu	37	10	51826259	51826259	+	RNA	DEL	A	A	-	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	.	.	.	.	AAAAGCAAAAAAA		8	3	0.38	6	0	0				0	0				
CCAR1	55749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70525822	70525822	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	CCAR1,NS,carcinoma,0,1	CCAR1	NM_018237	exon17	c.G2284C	p.E762Q	AATAAAGAACATT		86	7	0.08	89	0	0		0	1	128	37	0.29			
PIPSL	0	broad.mit.edu	37	10	95718361	95718361	+	RNA	DEL	T	T	-	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	.	.	.	.	CTTTTCTTTTCTT		11	4	0.36	14	0	0				0	0				
KRTAP5-5	439915	mdanderson.org	37	11	1651203	1651203	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001001480	exon1	c.T133C	p.C45R	GGAGGCTGTGGGG		51	6	0.12	50	0	0				0	0				
BDNF-AS	497258	hgsc.bcm.edu	37	11	27681201	27681201	+	RNA	SNP	C	C	T	rs182322619		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	.	.	.	.	TGCGCGCGCGCGT		94	8	0.09	114	0	0				0	0				
DEPDC7	91614	broad.mit.edu	37	11	33047234	33047234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	DEPDC7	NM_001077242	exon2	c.G103T	p.A35S	TTTGGAGCCACGT		182	5	0.03	184	0	0		94		30	0	0.00			
SLC35C1	55343	mdanderson.org	37	11	45827629	45827629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_018389	exon1	c.G277T	p.A93S	CTCAGCGCTCTGG		52	3	0.06	36	0	0				13	0	0.00			
C11orf82	220042	hgsc.bcm.edu;mdanderson.org	37	11	82639955	82639955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_145018	exon4	c.G250T	p.G84C	TTTTTTGGTCTTA		82	4	0.05	81	0	0				13	0	0.00			
PGR	5241	mdanderson.org	37	11	100998763	100998763	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_000926	exon1	c.T1039C	p.C347R	AGGCACAGGGTGA		30	4	0.13	25	0	0				0	0				
DDX10	1662	broad.mit.edu	37	11	108712092	108712092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	DDX10	NM_004398	exon15	c.G2136T	p.E712D	TGCTGAGGAAGAT		239	6	0.03	227	0	0		70		78	0	0.00			
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	C	G	rs121913530	bycluster	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	KRAS_ENST00000256078,NS,adenocarcinoma,+1,25136	KRAS_ENST00000256078	NM_004985	exon2	c.G34C	p.G12R	CGCCACCAGCTCC		336	122	0.36	210	0	0		1	25136	22	13	0.59			
TIMELESS	8914	broad.mit.edu	37	12	56827600	56827600	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	TIMELESS	NM_003920	exon3	c.A208C	p.T70P	GCTGGGTGAGGAT		78	22	0.28	62	12	0.1935483871		107		39	1	0.03			
NDUFA4L2	56901	mdanderson.org	37	12	57629360	57629360	+	Silent	SNP	G	G	T	rs139105980	alternate_allele	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_020142	exon5	c.C250A	p.R84R	CTGGCCGGTCCTT		55	3	0.05	48	0	0				25	0	0.00			
ACAD10	80724	mdanderson.org	37	12	112182447	112182447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001136538	exon14	c.G1808T	p.G603V	GCTTAGGGCAAGC		47	3	0.06	29	0	0				20	0	0.00			
RASAL1	8437	mdanderson.org	37	12	113565955	113565955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001193520	exon4	c.C151A	p.P51T	AGAAGGGGCCCAG		43	3	0.07	35	0	0				1	0	0.00			
NCOR2	9612	mdanderson.org	37	12	124831293	124831293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_006312	exon33	c.C4176A	p.D1392E	GGTCAGGTCCCGT		39	3	0.08	45	0	0				11	0	0.00			
GUCY1B2	2974	mdanderson.org	37	13	51600936	51600936	+	RNA	SNP	G	G	A	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	.	.	.	.	AGGAAAGCTGCCT		47	3	0.06	50	0	0				0	0				
METTL3	56339	mdanderson.org	37	14	21971825	21971825	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_019852	exon2	c.C300A	p.I100I	AAGACAGATGGAC		118	5	0.04	107	0	0				61	0	0.00			
DHRS4L2	317749	mdanderson.org	37	14	24458223	24458223	+	Missense_Mutation	SNP	A	A	G	rs139671977	bycluster;byfrequency	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	DHRS4L2,trunk,malignant_melanoma,0,1	DHRS4L2	NM_198083	exon1	c.A67G	p.R23G	AGCTCCAGGATGA		43	5	0.12	47	1	0.0212765957	0	0	1	9	0	0.00			
DDHD1	0	broad.mit.edu	37	14	53522376	53522376	+	Splice_Site	SNP	A	A	G	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	DDHD1	NM_001160147	exon12	c.2266+2T>C	.	GAAATTACCTAAT		68	8	0.12	57	0	0		202		0	0				
YLPM1	56252	hgsc.bcm.edu;mdanderson.org	37	14	75265422	75265422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_019589	exon5	c.G3422T	p.S1141I	CTGGGAGCAGGGA		123	5	0.04	101	0	0				23	0	0.00			
NRXN3	9369	hgsc.bcm.edu	37	14	79746680	79746680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_138970	exon1	c.G46T	p.A16S	CGGCCGGCCTGGA		84	4	0.05	66	0	0				0	0				
.	0	bcgsc.ca	37	15	23407031	23407031	+	Missense_Mutation	SNP	T	T	C	rs376343793		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	.	.	.	.	TCCTGCTTCCACA		274	17	0.06	247	6	0.024291498				0	0				
KIF7	374654	mdanderson.org	37	15	90174728	90174728	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_198525	exon15	c.G3109T	p.E1037X	GTACCTCGGGGGA		33	3	0.09	45	1	0.0222222222				50	0	0.00			
HMOX2	3163	hgsc.bcm.edu;mdanderson.org	37	16	4555575	4555575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	HMOX2,colon,carcinoma,-1,1	HMOX2	NM_001127205	exon2	c.A50G	p.K17R	AAAAAAAGAACTC		44	3	0.07	41	1	0.0243902439		-1	1	159	0	0.00			
ARHGAP17	55114	mdanderson.org	37	16	24958877	24958877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_018054	exon14	c.C1167A	p.S389R	CACATCGCTGGTC		43	3	0.07	53	0	0				33	0	0.00			
CES3	23491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67006271	67006271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_024922	exon11	c.C1304T	p.P435L	GAAGCCCTGTCTT		154	21	0.14	182	0	0				8	2	0.25			
KIAA0513	9764	mdanderson.org	37	16	85101005	85101005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_014732	exon2	c.G328T	p.G110W	TCTGGAGGGTAAG		20	2	0.10	11	0	0				31	0	0.00			
CCDC144B	0	broad.mit.edu	37	17	18498258	18498258	+	RNA	DEL	T	T	-	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	CCDC144B	.	.	.	.	TCTCCATTTTTTT		320	8	0.03	274	0	0		106		0	0				
GRB7	2886	mdanderson.org	37	17	37903138	37903138	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001242442	exon15	c.G1656T	p.R552R	CACGCGGGTGGCC		17	3	0.18	18	0	0				97	0	0.00			
IGFBP4	3487	mdanderson.org	37	17	38600240	38600240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001552	exon1	c.G253T	p.G85W	CCCCGAGGGGTGG		11	2	0.18	17	0	0				159	0	0.00			
CDC27	996	hgsc.bcm.edu	37	17	45216150	45216150	+	Silent	SNP	T	T	C	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	CDC27_ENST00000531206,NS,carcinoma,0,2	CDC27_ENST00000531206	NM_001114091	exon13	c.A1677G	p.S559S	CAGAACTGAAAGA		79	5	0.06	71	1	0.014084507		0	2	285	0	0.00			
PHOSPHO1	162466	mdanderson.org	37	17	47301674	47301674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001143804	exon3	c.C813A	p.S271R	CACCACGCTGGCG		18	2	0.11	25	0	0				1	0	0.00			
SLC39A11	201266	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	70645032	70645032	+	Missense_Mutation	SNP	G	G	C	rs61736066	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001159770	exon9	c.C860G	p.A287G	GGCTCAGCCAGCA		61	6	0.10	68	0	0				23	5	0.22			
MYOM1	8736	mdanderson.org	37	18	3083876	3083876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_003803	exon33	c.C4395A	p.D1465E	TTTCAGGTCTGTA		74	4	0.05	49	0	0				0	0				
ZFR2	23217	mdanderson.org	37	19	3806039	3806039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_015174	exon19	c.C2728A	p.R910S	GGAAGCGGGCCCC		50	3	0.06	42	0	0				0	0				
PNPLA6	10908	mdanderson.org	37	19	7615966	7615966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001166111	exon19	c.G2184T	p.L728F	CACCTTGGGTCAC		50	4	0.08	49	0	0				60	0	0.00			
MUC16	94025	broad.mit.edu	37	19	9008299	9008299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	MUC16	NM_024690	exon41	c.C39253A	p.H13085N	GGTGGTGGGTGCA		151	5	0.03	137	1	0.0072992701		4315		0	0				
OR7G1	125962	mdanderson.org	37	19	9226017	9226017	+	Nonsense_Mutation	SNP	C	C	T	rs2217657	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	OR7G1,NS,carcinoma,0,3	OR7G1	NM_001005192	exon1	c.G423A	p.W141X	CAAGCCCCAGAAA		120	3	0.03	108	0	0		0	3	0	0				
ANKLE1	126549	broad.mit.edu	37	19	17397498	17397501	+	Frame_Shift_Del	DEL	TGTT	TGTT	-	rs35771129	alternate_allele	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	TGTT	TGTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	ANKLE1	.	.	.	.	TGTGTGTGTTTGT		9	8	0.89	10	0	0		27		4	0	0.00			
ZNF30	90075	broad.mit.edu;mdanderson.org	37	19	35424555	35424555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	ZNF30	NM_001099438	exon4	c.G187T	p.V63L	CCACATGTGATCG		128	5	0.04	127	0	0		44		7	0	0.00			
ZNF540	163255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38103317	38103317	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	ZNF540,NS,carcinoma,+1,1	ZNF540	NM_152606	exon5	c.G1136C	p.G379A	ATGCAGGTAAGAA		117	14	0.12	83	0	0		1	1	29	9	0.31			
RYR1	6261	broad.mit.edu	37	19	38964342	38964342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	RYR1	NM_001042723	exon28	c.G4091T	p.G1364V	AGGCGGGGGGAGA		102	3	0.03	58	0	0		708		0	0				
GYS1	2997	mdanderson.org	37	19	49488754	49488754	+	Missense_Mutation	SNP	C	C	T	rs372637032		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_002103	exon5	c.G787A	p.A263T	CGATGGCGGTGAT		51	3	0.06	61	0	0				22	0	0.00			
ZNF615	284370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52496353	52496353	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001199324	exon7	c.A2009C	p.K670T	GAGAATTTTCCAC		189	24	0.13	154	0	0				12	0	0.00			
ZNF525	170958	broad.mit.edu	37	19	53879109	53879109	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	ZNF525	.	.	.	.	ATACAGGGACGTG		46	5	0.11	62	1	0.0161290323		35		13	0	0.00			
HTRA2	27429	broad.mit.edu	37	2	74757212	74757212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	HTRA2	NM_013247	exon1	c.A79G	p.R27G	TGGGGGAGGAGAC		130	11	0.08	80	5	0.0625		22		12	0	0.00			
HK2	3099	broad.mit.edu	37	2	75105841	75105841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	HK2	NM_000189	exon9	c.G1058A	p.R353H	AGGCCCGTGAGGT		381	4	0.01	298	0	0		85		4	0	0.00			
.	0	broad.mit.edu	37	2	91887904	91887905	+	RNA	INS	-	-	T	rs369805878	alternate_allele	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	.	.	.	.	ATTTTCCATTTTT		168	10	0.06	170	4	0.0235294118				0	0				
SAP130	79595	mdanderson.org	37	2	128770644	128770644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001145928	exon6	c.C782A	p.A261D	GGCTGAGCAGTAG		81	5	0.06	71	0	0				51	0	0.00			
TANK	10010	broad.mit.edu	37	2	162087512	162087512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	TANK	NM_004180	exon7	c.C551T	p.T184M	AGTGTACGGATAA		240	6	0.03	285	0	0		35		40	0	0.00			
CCDC173	129881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	170537595	170537595	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001085447	exon2	c.C216A	p.L72L	TGCACGGAGGCAT		178	8	0.04	170	0	0				1	0	0.00			
OBSL1	23363	mdanderson.org	37	2	220430190	220430190	+	Silent	SNP	G	G	T	rs199883250		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001173431	exon6	c.C2181A	p.T727T	TGTGAAGGTCAAC		32	3	0.09	45	0	0	0.001			87	0	0.00			
ZNF341	84905	mdanderson.org	37	20	32379155	32379155	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	ZNF341,bladder,carcinoma,0,1	ZNF341	NM_032819	exon15	c.G2376T	p.A792A	GGACGCGGTGCTG		26	2	0.08	53	0	0		0	1	16	0	0.00			
MYH7B	57644	mdanderson.org	37	20	33584173	33584173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_020884	exon29	c.G3094T	p.A1032S	GAGATGGCTGCGC		44	3	0.07	54	0	0				0	0				
NFATC2	4773	bcgsc.ca	37	20	50140461	50140461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	NFATC2,NS,carcinoma,+2,1	NFATC2	NM_012340	exon2	c.T319C	p.S107P	GGCCCGAGGCCCC		69	4	0.06	73	0	0		112	1	0	0				
.	54053	bcgsc.ca	37	21	11180933	11180933	+	RNA	SNP	A	A	C	rs79885392	bycluster;byfrequency	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	.	.	.	.	TTTACAAGTTTTT		114	9	0.08	100	1	0.01				0	0				
LSS	4047	mdanderson.org	37	21	47642609	47642609	+	Silent	SNP	G	G	T	rs11558754	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001145436	exon4	c.C363A	p.A121A	GTATCCGGCTGGC		50	3	0.06	48	0	0				13	0	0.00			
CABIN1	23523	mdanderson.org	37	22	24445671	24445671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001201429	exon7	c.G645T	p.M215I	CAGAATGTTCCTC		29	3	0.10	37	0	0				10	0	0.00			
HORMAD2	150280	mdanderson.org	37	22	30572077	30572077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_152510	exon11	c.G845T	p.S282I	TGTGCAGTCAGCA		40	3	0.08	54	0	0				0	0				
SLC16A8	23539	mdanderson.org	37	22	38477003	38477003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_013356	exon4	c.G1042A	p.A348T	AGAAGGCGACGAG		13	2	0.15	16	0	0				0	0				
HESX1	8820	broad.mit.edu	37	3	57232488	57232488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	HESX1	NM_003865	exon3	c.C390A	p.N130K	ATAGCAGTTTACT		253	6	0.02	256	0	0		26		9	0	0.00			
ACAD11	84129	mdanderson.org	37	3	132277850	132277850	+	Missense_Mutation	SNP	G	G	A	rs200376706	by1000genomes	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	ACAD11,NS,carcinoma,0,1	ACAD11	NM_032169	exon20	c.C2308T	p.R770W	GGTCCCGCAGCTC		112	6	0.05	111	0	0	0	0	1	211	0	0.00			
CRMP1	1400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	5837737	5837737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001014809	exon11	c.C1528T	p.P510S	TCCTTGGGTACAG		142	24	0.17	154	0	0				13	2	0.15			
DNAH5	1767	broad.mit.edu	37	5	13830171	13830171	+	Silent	SNP	C	C	G	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	DNAH5	NM_001369	exon37	c.G6213C	p.V2071V	CATAGTCACATTA		281	4	0.01	326	1	0.0030674847		868		0	0				
BASP1	10409	mdanderson.org	37	5	17275706	17275706	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_006317	exon2	c.G381T	p.A127A	CGCCGCGGCCCCG		20	2	0.10	20	0	0				4	0	0.00			
MEGF10	84466	mdanderson.org	37	5	126792994	126792994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001256545	exon25	c.G3407T	p.S1136I	ACAGCAGCAGCAG		39	3	0.08	28	0	0				0	0				
PCDHA13	56136	mdanderson.org	37	5	140263827	140263827	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_031865	exon1	c.G1974T	p.A658A	GCCCGCGCTGACG		47	3	0.06	40	0	0				0	0				
FAF2	23197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	175875462	175875462	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_014613	exon1	c.G54A	p.L18L	GCTGCTGCAGTTT		68	17	0.25	77	0	0				13	7	0.54			
BTN2A2	10385	hgsc.bcm.edu	37	6	26384092	26384092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	BTN2A2_ENST00000432533,bladder,carcinoma,-1,2	BTN2A2_ENST00000432533	NM_181531	exon2	c.C43T	p.L15F	GCCTCCCTCCTCC		120	7	0.06	87	2	0.0229885057		-1	2	16	0	0.00			
MOCS1	4337	mdanderson.org	37	6	39881102	39881102	+	Missense_Mutation	SNP	A	A	G	rs7762875	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001075098	exon6	c.T716C	p.L239P	AGGGGGAGGCCCT		93	5	0.05	107	1	0.0093457944				15	0	0.00			
TTK	7272	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	80747723	80747723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	TTK,NS,NS,0,1	TTK	NM_003318	exon18	c.G2089A	p.D697N	ATCAAAGATATGT		218	19	0.09	225	2	0.0088888889		0	1	230	66	0.29			
.	0	bcgsc.ca	37	7	55004383	55004383	+	RNA	SNP	C	C	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	.	.	.	.	AGTGACCATTCCA		68	6	0.09	43	0	0				0	0				
CUX1	1523	broad.mit.edu	37	7	101882800	101882800	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	CUX1	NM_001202543	exon23	c.G3856T	p.E1286X	ACCATCGAAGACC		244	7	0.03	168	0	0		253		21	0	0.00			
KLHDC10	23008	mdanderson.org	37	7	129710491	129710491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_014997	exon1	c.C8T	p.A3V	TGTCGGCCGCCCA		33	3	0.09	10	0	0				0	0				
.	0	bcgsc.ca	37	8	13880458	13880458	+	RNA	SNP	A	A	T	rs148780946	by1000genomes;alternate_allele	TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	.	.	.	.	GAACTGATTTTTT		175	43	0.25	154	1	0.0064935065				1	0	0.00			
MTFR1	9650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	66605961	66605961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_014637	exon4	c.C248A	p.A83D	GGGTAGCCAAAGA		204	52	0.25	135	0	0				125	45	0.36			
ESRP1	54845	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	95655639	95655639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	ESRP1	NM_001122827	exon3	c.A370G	p.K124E	GCTTCCAAGAAGG		74	6	0.08	56	0	0		148		28	6	0.21			
GDF6	392255	broad.mit.edu	37	8	97157410	97157411	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	CG	CG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	GDF6	NM_001001557	exon2	c.748_749del	p.250_250del	GGTCCCCGCGCGC		6	3	0.50	8	0	0		57		0	0				
KCNS2	3788	mdanderson.org	37	8	99441319	99441319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_020697	exon2	c.G1112T	p.S371I	CCGTCAGTATGAC		89	4	0.04	63	0	0				0	0				
SHB	6461	mdanderson.org	37	9	38068265	38068265	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_003028	exon1	c.C378A	p.R126R	GAAGGCGCGCTGG		18	2	0.11	12	0	0				1	0	0.00			
TMC1	117531	broad.mit.edu	37	9	75420368	75420368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	TMC1	NM_138691	exon18	c.G1637T	p.R546M	TTCTAAGGGCATG		146	5	0.03	134	0	0		87		4	0	0.00			
SYK	6850	broad.mit.edu	37	9	93637110	93637110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	SYK,rectum,carcinoma,-1,1	SYK	NM_003177	exon9	c.A1160G	p.K387R	TGAAAAAGGGCTA		103	4	0.04	96	1	0.0104166667		132	1	14	0	0.00			
LAMC3	10319	mdanderson.org	37	9	133884953	133884953	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_006059	exon1	c.G352T	p.V118F	ACCTCGGTCAACA		47	4	0.09	66	0	0				7	0	0.00			
KLHL34	257240	mdanderson.org	37	X	21675219	21675219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_153270	exon1	c.G688A	p.A230T	CGTCGGCGGGAAC		39	3	0.08	30	0	0				0	0				
PCYT1B	9468	mdanderson.org	37	X	24605360	24605360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_001163265	exon5	c.C563A	p.A188E	TCACCTGCTTCCT		39	3	0.08	29	1	0.0344827586				0	0				
RGAG1	57529	hgsc.bcm.edu;mdanderson.org	37	X	109694020	109694020	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	.	NM_020769	exon3	c.G175T	p.G59X	GACCCTGGAGGGA		102	5	0.05	94	0	0				1	0	0.00			
TKTL1	8277	broad.mit.edu;mdanderson.org	37	X	153540936	153540936	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AC-01A-11D-A435-10	TCGA-VF-A8AC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89c25d23-5322-45d9-9ac6-b3c110504481	47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7	.	TKTL1	NM_012253	exon6	c.G676T	p.E226X	GGTATTGAGGATG		80	5	0.06	91	0	0		61		8	0	0.00			
