Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
MACF1	23499	broad.mit.edu	37	1	39801169	39801169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	MACF1	.	.	.	.	ATGCTCGGGTGAA		377	7	0.02	370	1	0.0027027027		909		0	0				
CYP4Z1	199974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47533216	47533216	+	Silent	SNP	C	C	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_178134	exon1	c.C54A	p.I18I	GCTGATCCTCCTC		117	37	0.32	110	0	0				0	0				
ANKRD13C	81573	broad.mit.edu	37	1	70820000	70820000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	ANKRD13C	NM_030816	exon1	c.C92T	p.A31V	GCAGCCGCCGCTT		77	4	0.05	75	0	0		36		15	0	0.00			
WDR63	126820	mdanderson.org	37	1	85573731	85573731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_145172	exon15	c.G1569T	p.W523C	TTTTTGGGATATT		40	3	0.08	63	0	0				0	0				
SEC22B	9554	broad.mit.edu	37	1	145109975	145109976	+	RNA	INS	-	-	C	rs11458983	bycluster	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	.	.	.	.	AACTTTGCTAAAG		9	4	0.44	6	0	0				0	0				
SLC27A3	11000	broad.mit.edu	37	1	153750946	153750946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	SLC27A3	NM_024330	exon6	c.T1505C	p.F502S	ATATCTTCCCCTT		236	5	0.02	197	0	0		42		68	0	0.00			
IRF6	3664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	209968742	209968742	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_006147	exon5	c.G401A	p.W134X	TCATCCCAGGGAG		90	13	0.14	83	0	0				18	1	0.06			
ERO1LB	56605	broad.mit.edu	37	1	236416763	236416763	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	ERO1LB	NM_019891	exon3	c.C265A	p.H89N	AACAGTGGCCATC		263	6	0.02	204	0	0		48		4	0	0.00			
SDCCAG8	10806	mdanderson.org	37	1	243471336	243471336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	SDCCAG8,NS,carcinoma,0,2	SDCCAG8	NM_006642	exon8	c.G786T	p.E262D	TAAAGAGCAACTA		119	5	0.04	124	0	0		0	2	14	0	0.00			
C10orf40	283025	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	10	61718595	61718595	+	RNA	SNP	T	T	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	.	.	.	.	TAAAATTGATTTT		197	36	0.18	186	0	0				0	0				
TRPM5	29850	bcgsc.ca;mdanderson.org	37	11	2429028	2429028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	TRPM5	NM_014555	exon19	c.C2897T	p.T966I	ACATTGGTGACCA		100	5	0.05	115	0	0		86		0	0				
OR52N4	390072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5776663	5776663	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	OR52N4,NS,carcinoma,0,1	OR52N4	NM_001005175	exon1	c.C693T	p.S231S	CCTCTCCTCAGCA		173	25	0.14	152	0	0		0	1	1	0	0.00			
INCENP	3619	mdanderson.org	37	11	61897743	61897743	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_020238	exon4	c.C744T	p.V248V	AGGGGTCGGGACG		48	3	0.06	44	0	0				31	0	0.00			
CABP2	51475	mdanderson.org	37	11	67290111	67290111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_016366	exon2	c.A119G	p.D40G	GCGGGGTCCCCCT		64	4	0.06	75	1	0.0133333333				0	0				
SYTL2	54843	broad.mit.edu	37	11	85437269	85437269	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	SYTL2	NM_206927	exon1	c.231delA	p.K77fs	CATAACTTTTTTT		485	7	0.01	190	0	0		231		0	0				
HYOU1	10525	mdanderson.org	37	11	118925755	118925755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_001130991	exon6	c.C437A	p.P146H	TCCTCAGGTGAGA		49	3	0.06	69	0	0				103	0	0.00			
C2CD2L	9854	broad.mit.edu;mdanderson.org	37	11	118983227	118983227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	C2CD2L,left_upper_lobe,carcinoma,-1,1	C2CD2L	NM_014807	exon9	c.T1120C	p.S374P	GTGGGCTCCCCCT		68	4	0.06	83	0	0		39	1	13	0	0.00			
FOXM1	2305	hgsc.bcm.edu	37	12	2968602	2968644	+	Frame_Shift_Del	DEL	TGATTCCTCTTTGAAAGATGGGGCCGGGGAGGGCCACTCTTCC	TGATTCCTCTTTGAAAGATGGGGCCGGGGAGGGCCACTCTTCC	-	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	TGATTCCTCTTTGAAAGATGGGGCCGGGGAGGGCCACTCTTCC	TGATTCCTCTTTGAAAGATGGGGCCGGGGAGGGCCACTCTTCC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	FOXM1	NM_202002	exon10	c.1567_1609del	p.523_537del	GTGAGATGATTCC		83	0	0.00	53	0	0		62		283	0	0.00			
ACACB	32	broad.mit.edu	37	12	109629568	109629568	+	Splice_Site	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	ACACB	NM_001093	exon13	c.G2295T	p.Q765H	AGTGCAGGTAGGG		225	4	0.02	203	0	0		330		1	0	0.00			
TBX5	6910	broad.mit.edu	37	12	114836479	114836479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	TBX5	NM_000192	exon5	c.G409A	p.V137M	GGTGCACGTACAG		163	5	0.03	151	0	0		188		2	0	0.00			
NCOR2	9612	mdanderson.org	37	12	124825195	124825195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_006312	exon37	c.C5291T	p.A1764V	TGGGGCGCGGTGG		30	4	0.13	30	0	0				83	11	0.13			
.	0	broad.mit.edu;bcgsc.ca	37	14	107049074	107049074	+	RNA	SNP	C	C	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	.	.	.	.	GAATCACCTTTTA		138	22	0.16	140	0	0				3	0	0.00			
MRPS11	64963	bcgsc.ca	37	15	89010689	89010689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	MRPS11	.	.	.	.	CAGTCCCGGAACT		12	3	0.25	24	0	0		14		0	0				
FAM173A	65990	mdanderson.org	37	16	771841	771841	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_023933	exon3	c.G308T	p.G103V	CCGTGGGCTACGA		14	2	0.14	34	0	0				66	0	0.00			
GRIN2A	2903	hgsc.bcm.edu	37	16	9862936	9862936	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_000833	exon13	c.G2367A	p.E789E	CAGCTCCTCCATC		85	4	0.05	80	0	0				0	0				
GRIN2A	2903	mdanderson.org	37	16	9916124	9916124	+	Missense_Mutation	SNP	G	G	T	rs376029542	alternate_allele	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_001134407	exon10	c.C2165A	p.T722K	TACCCCGTTTTCA		99	5	0.05	109	0	0				0	0				
RBL2	5934	mdanderson.org	37	16	53495691	53495691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	RBL2,NS,carcinoma,-1,2	RBL2	NM_005611	exon10	c.G1385T	p.R462I	CTAACAGACTGAA		96	5	0.05	90	0	0		-1	2	6	0	0.00			
NLGN2	57555	mdanderson.org	37	17	7320871	7320871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_020795	exon7	c.G2261T	p.G754V	GCGTCGGGGCGGA		18	2	0.11	11	0	0				14	0	0.00			
WRAP53	55135	mdanderson.org	37	17	7606607	7606607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_001143991	exon11	c.G1450T	p.V484L	CAGCGTGTGTTTC		41	3	0.07	33	0	0				258	0	0.00			
LRRC48	83450	broad.mit.edu	37	17	17897710	17897710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	LRRC48	NM_031294	exon7	c.G689T	p.R230L	CGCAGCGGGAGGA		63	3	0.05	38	0	0		49		0	0				
KRTAP4-3	85290	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	39323995	39323995	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	KRTAP4-3	NM_033187	exon1	c.T430G	p.C144G	GGCAGCACTGGGG		177	9	0.05	157	1	0.0063694268		40		0	0				
DNAH17	8632	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	76556825	76556825	+	Silent	SNP	T	T	C	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	DNAH17	NM_173628	exon13	c.A2028G	p.K676K	CACCGCTTTGCTG		80	5	0.06	68	4	0.0588235294		347		0	0				
FN3KRP	79672	broad.mit.edu	37	17	80680735	80680735	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	FN3KRP,NS,carcinoma,+2,1	FN3KRP	NM_024619	exon4	c.G441T	p.V147V	TGACGTGGTGACG		324	6	0.02	246	0	0		31	1	172	0	0.00			
OR7G3	390883	mdanderson.org	37	19	9237191	9237191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_001001958	exon1	c.C436A	p.L146M	ACAGCAGAAGCAG		89	4	0.04	113	1	0.0088495575				0	0				
CCDC151	115948	mdanderson.org	37	19	11532404	11532404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_145045	exon11	c.C1531A	p.Q511K	GCGCCTGCAGTTT		133	5	0.04	157	0	0				7	0	0.00			
ZNF439	90594	hgsc.bcm.edu	37	19	11978338	11978338	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_152262	exon3	c.G454T	p.E152X	TGTCAGGAATATG		123	5	0.04	109	0	0				6	0	0.00			
ANO8	57719	mdanderson.org	37	19	17435612	17435612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_020959	exon17	c.G3245A	p.G1082D	CTGCTGCCACTGC		52	4	0.08	67	0	0				8	0	0.00			
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17945938	17945938	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_000215	exon15	c.C2001T	p.I667I	CAGCTTGATGAAG		112	18	0.16	132	0	0				9	0	0.00			
ZNF792	126375	broad.mit.edu	37	19	35454540	35454540	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	ZNF792	NM_175872	exon1	c.C27A	p.P9P	CTGCGCGGGGTCC		224	5	0.02	228	1	0.0043859649		46		0	0				
FFAR1	2864	mdanderson.org	37	19	35842505	35842505	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_005303	exon1	c.G51T	p.A17A	CTTTGCGCTGGGC		22	2	0.09	29	0	0				0	0				
SCAF1	58506	mdanderson.org	37	19	50161566	50161566	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_021228	exon11	c.G3849T	p.K1283N	TCGCAAGCCAGGG		34	3	0.09	31	0	0				271	0	0.00			
KCNK3	3777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	26950833	26950833	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_002246	exon2	c.C582T	p.F194F	CTGCTTCATCACC		184	35	0.19	150	0	0				5	2	0.40			
C2orf81	388963	broad.mit.edu	37	2	74641573	74641573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	C2orf81	NM_001145054	exon4	c.C1650A	p.N550K	GCTCCGGTTCCAC		201	5	0.02	225	1	0.0044444444		23		19	0	0.00			
FER1L5	90342	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	97363297	97363297	+	RNA	SNP	A	A	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	FER1L5	NM_001113382	exon37	c.A4199T	p.K1400M	GGTTCAAGTCCAG		287	9	0.03	285	0	0		113		0	0				
RGPD4	285190	hgsc.bcm.edu	37	2	108443536	108443536	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	RGPD4,caecum,carcinoma,-1,1	RGPD4	NM_182588	exon1	c.C67G	p.R23G	TCGCCTCGAAAGG		116	4	0.03	133	0	0		-1	1	0	0				
WASH2P	0	broad.mit.edu;bcgsc.ca	37	2	114355129	114355129	+	RNA	SNP	G	G	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	.	.	.	.	CCATCCGCCAAGC		195	17	0.09	168	1	0.005952381				437	11	0.03			
TMX4	56255	broad.mit.edu	37	20	8000252	8000252	+	Silent	SNP	A	A	C	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	TMX4	NM_021156	exon1	c.T9G	p.G3G	GCGCCCACCCGCC		35	11	0.31	39	16	0.4102564103		39		5	0	0.00			
FRG1B	0	broad.mit.edu	37	20	29632635	29632635	+	Missense_Mutation	SNP	C	C	G	rs375238322		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	FRG1B	.	.	.	.	CCAAGACCACAAA		871	6	0.01	731	0	0		181		114	7	0.06	rescued with RNA-seq		
ELMO2	63916	hgsc.bcm.edu	37	20	45014804	45014804	+	Silent	SNP	G	G	A	rs201990540	bycluster;by1000genomes	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	ELMO2,NS,carcinoma,-1,1	ELMO2	NM_182764	exon8	c.C636T	p.A212A	TTCCTCGGCTATC		79	6	0.08	77	2	0.025974026	0.002	-1	1	16	0	0.00			
HELZ2	85441	mdanderson.org	37	20	62191976	62191976	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_001037335	exon17	c.G7356A	p.R2452R	GGGCGGCCTCCTC		44	4	0.09	43	0	0				103	0	0.00			
KRTAP13-1	140258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	21	31768921	31768921	+	Missense_Mutation	SNP	T	T	C	rs141793094	bycluster	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_181599	exon1	c.T517C	p.X173R	TACTATTGATCAT		170	47	0.28	164	0	0	0			0	0				
HIRA	7290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	19348846	19348846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	HIRA,NS,carcinoma,0,1	HIRA	NM_003325	exon17	c.G1999A	p.A667T	TCTCTGCGGTTAG		143	6	0.04	108	0	0		0	1	56	0	0.00			
LOC96610	0	broad.mit.edu	37	22	22661474	22661474	+	RNA	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	.	.	.	.	CAGATGCGTCTGA		118	6	0.05	77	1	0.012987013				96	0	0.00			
ZNF280B	140883	mdanderson.org	37	22	22842206	22842206	+	Silent	SNP	T	T	A	rs11109	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_080764	exon4	c.A1518T	p.S506S	TTCCAGTGACACT		117	24	0.21	104	0	0				6	4	0.67			
MTMR3	8897	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	30416630	30416630	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	MTMR3	NM_021090	exon17	c.G2982A	p.L994L	GTGGCTGCATAGC		135	6	0.04	123	0	0		106		34	0	0.00			
TNRC6B	23112	broad.mit.edu	37	22	40658045	40658045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	TNRC6B	NM_001024843	exon7	c.C433A	p.Q145K	CGTGGGCAGCCCC		175	6	0.03	219	2	0.0091324201		195		3	0	0.00			
DENND6B	414918	mdanderson.org	37	22	50752284	50752284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_001001794	exon14	c.C1162A	p.H388N	GGAGGTGGGCCGT		43	3	0.07	66	0	0				31	0	0.00			
TPRXL	0	broad.mit.edu	37	3	14105964	14105965	+	In_Frame_Ins	INS	-	-	AGC	rs142895893	bycluster;by1000genomes	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	TPRXL	.	.	.	.	CAGCTCTAGCAGC		7	3	0.43	7	0	0		10		0	0				
MST1	4485	hgsc.bcm.edu;broad.mit.edu	37	3	49723603	49723603	+	Missense_Mutation	SNP	G	G	A	rs199969873	bycluster;by1000genomes	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	MST1,NS,carcinoma,0,5	MST1	NM_020998	exon9	c.C1039T	p.R347W	GGTTCCGGCAGAA		49	6	0.12	75	1	0.0133333333	0.005	0	5	8	0	0.00			
TLR9	54106	mdanderson.org	37	3	52256987	52256987	+	Missense_Mutation	SNP	G	G	T	rs373748615	alternate_allele	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_017442	exon2	c.C1345A	p.Q449K	CAGGCTGCAGCCA		44	3	0.07	81	0	0				3	0	0.00			
DPPA4	55211	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	109047903	109047903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	DPPA4	NM_018189	exon6	c.C712T	p.L238F	CAGGGAGACTTTT		348	10	0.03	362	0	0		56		1072	67	0.06	rescued with RNA-seq		
CPZ	8532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	8621216	8621216	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_001014447	exon11	c.G1831C	p.G611R	TCTTTGGGGGAGG		127	30	0.24	136	0	0				12	0	0.00			
UGT2B10	7365	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	69682264	69682264	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	UGT2B10	.	.	.	.	GTCCTGGCTACTC		264	8	0.03	357	0	0		134		0	0				
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	126240963	126240963	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_024582	exon1	c.G3397T	p.G1133X	CCAAATGGAGAAG		114	24	0.21	96	0	0				0	0				
PPID	5481	mdanderson.org	37	4	159632000	159632000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_005038	exon8	c.G895A	p.A299T	CAAGAGCCTACAA		82	4	0.05	103	0	0				123	0	0.00			
SEMA5A	9037	broad.mit.edu	37	5	9202166	9202166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	SEMA5A	NM_003966	exon9	c.G833A	p.C278Y	CGGGAGCAGTTCA		371	8	0.02	429	1	0.0023310023		236		0	0				
SPEF2	79925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35753823	35753823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_024867	exon24	c.C3428T	p.T1143I	AGGACACTCTTGG		85	17	0.20	110	0	0				1	0	0.00			
SLCO4C1	353189	mdanderson.org	37	5	101631956	101631956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_180991	exon1	c.C11A	p.A4D	CCTTTGGCGCTCT		55	3	0.05	99	0	0				3	0	0.00			
ANKHD1	54882	hgsc.bcm.edu	37	5	139781730	139781730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	ANKHD1-EIF4EBP3,NS,carcinoma,0,2	ANKHD1-EIF4EBP3	NM_017978	exon1	c.G178A	p.G60S	AGCAGCGGCGGCG		29	3	0.10	28	1	0.0357142857		0	2	11	0	0.00			
SLC6A7	6534	hgsc.bcm.edu	37	5	149578888	149578888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_014228	exon5	c.G682T	p.V228L	GTCATCGTGTTCC		71	4	0.06	78	0	0				1	0	0.00			
ZNF165	7718	mdanderson.org	37	6	28053615	28053615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_003447	exon2	c.G357T	p.E119D	AGAGGAGGCAGTG		52	3	0.06	41	0	0				12	0	0.00			
KCNQ5	56479	broad.mit.edu	37	6	73843232	73843232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	KCNQ5	NM_001160133	exon11	c.A1393G	p.R465G	GACAGGAGGTCCC		252	5	0.02	190	0	0		153		1	0	0.00			
SEC63	11231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	108214783	108214783	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_007214	exon16	c.C1577G	p.S526X	TTTTTTGATTTAG		89	16	0.18	102	0	0				212	6	0.03			
FIG4	9896	mdanderson.org	37	6	110064975	110064975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_014845	exon10	c.G1137T	p.K379N	AGTGAAGGTATGA		69	5	0.07	68	0	0				18	0	0.00			
GPER	2852	mdanderson.org	37	7	1132183	1132183	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_001505	exon2	c.G819T	p.L273L	CTGGCTGCCGGAG		45	3	0.07	36	0	0				0	0				
RADIL	55698	ucsc.edu	37	7	4874814	4874814	+	Silent	SNP	G	G	T	rs13232656	alternate_allele	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	RADIL	NM_018059	exon4	c.C840A	p.P280P	GCTGGAGGGGGTC		39	4	0.10	35	0	0		110		19	0	0.00			
CCDC146	57639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	76889506	76889506	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_020879	exon8	c.G939A	p.K313K	GGTCAAGCTATTG		294	44	0.15	260	0	0				2	0	0.00			
EZH2	0	broad.mit.edu	37	7	148512600	148512600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	EZH2	NM_004456	exon13	c.A1544G	p.K515R	TAACCCTTTTTCA		397	5	0.01	302	0	0		823		88	0	0.00			
MFHAS1	9258	mdanderson.org	37	8	8750295	8750295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_004225	exon1	c.C274A	p.L92M	GGACCAGGACGCG		54	4	0.07	85	0	0				0	0				
RP1L1	94137	mdanderson.org	37	8	10470155	10470155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_178857	exon4	c.C1453A	p.P485T	CAGAGGGGCTGGC		24	3	0.13	26	0	0				0	0				
PTK2B	2185	broad.mit.edu	37	8	27315955	27315955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	PTK2B	NM_173174	exon36	c.G2959T	p.A987S	GTGGACGCCAAGA		95	3	0.03	139	1	0.0071942446		304		54	0	0.00			
BAI1	575	mdanderson.org	37	8	143566121	143566121	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_001702	exon12	c.C2304T	p.N768N	AGACAACCTGGGT		40	3	0.08	37	0	0				0	0				
TYRP1	7306	broad.mit.edu	37	9	12702271	12702271	+	Splice_Site	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	TYRP1	NM_000550	exon5	c.G914T	p.S305I	CTGCAGGCACCGA		202	6	0.03	221	1	0.0045248869		60		0	0				
NPR2	4882	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	35802591	35802591	+	Missense_Mutation	SNP	G	G	A	rs180950551	bycluster;by1000genomes	TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_003995	exon11	c.G1802A	p.R601H	GTCCTCGTGGGAG		235	12	0.05	210	0	0	0.001			13	0	0.00			
SPATA31D1	389763	broad.mit.edu	37	9	84607496	84607496	+	Missense_Mutation	SNP	G	G	A	rs374319352		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	FAM75D4,colon,carcinoma,0,4	.	NM_001001670	exon4	c.G2111A	p.R704H	TGCCCCGCAGAAT		331	5	0.02	251	0	0			4	0	0				
BICD2	23299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95482926	95482926	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_001003800	exon4	c.C718G	p.L240V	CCTCCAGCTGCCG		181	19	0.10	179	0	0				11	2	0.18			
C9orf96	169436	mdanderson.org	37	9	136269921	136269921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	NM_153710	exon17	c.G1741T	p.A581S	CTGGCGGCCTTCA		48	3	0.06	39	0	0				1	0	0.00			
ND2	0	hgsc.bcm.edu	37	MT	4920	4920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	.	ENST00000361453	exon1	c.G451A	p.V151M	CTAAACGTAAGCC		11	8	0.73	7	0	0				0	0				
RIBC1	158787	broad.mit.edu	37	X	53455230	53455230	+	Splice_Site	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	RIBC1	NM_144968	exon5	c.200-1G>T	.	CCCCCAGGTACCA		106	4	0.04	101	0	0		20		0	0				
EDA2R	60401	broad.mit.edu	37	X	65819573	65819573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	EDA2R	NM_001242310	exon6	c.C710A	p.P237H	AGGATAGGGTTAA		170	5	0.03	147	0	0		30		4	0	0.00			
EDA	1896	broad.mit.edu	37	X	69176947	69176947	+	Missense_Mutation	SNP	G	G	A	rs132630314		TCGA-VF-A8AD-01A-11D-A435-10	TCGA-VF-A8AD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	feefbc56-4b2f-46b6-a16f-6b43fd128cb8	435363f1-972b-4055-bf34-528f12078dab	.	EDA	NM_001399	exon2	c.G467A	p.R156H	TTCGCCGCAATAA		398	6	0.02	347	0	0		61		1	0	0.00			
