Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
MIB2	142678	mdanderson.org	37	1	1562341	1562341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_080875	exon10	c.C1547T	p.A516V	AGGATGCCAACCT		32	3	0.09	35	0	0				26	0	0.00			
HSPG2	3339	mdanderson.org	37	1	22202511	22202511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	HSPG2,NS,carcinoma,+1,1	HSPG2	NM_005529	exon24	c.C3028A	p.R1010S	TGAAGCGCAGCTC		47	3	0.06	53	0	0		1	1	0	0				
AIM1L	55057	mdanderson.org	37	1	26669371	26669371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001039775	exon5	c.G3078T	p.W1026C	CAGCACCCAGCTG		43	3	0.07	48	0	0				0	0				
MANEAL	149175	mdanderson.org	37	1	38260364	38260364	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001113482	exon1	c.G510T	p.V170V	CGAAGTGCTGCGG		45	3	0.07	30	0	0				4	0	0.00			
ANKRD35	148741	hgsc.bcm.edu;broad.mit.edu	37	1	145561847	145561847	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	ANKRD35	NM_144698	exon10	c.1534delG	p.A512fs	GGGGGGCTTTGTC		160	11	0.07	184	0	0		96		0	0				
OR10K1	391109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	158435624	158435624	+	Silent	SNP	C	C	A	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	OR10K1,NS,carcinoma,0,1	OR10K1	NM_001004473	exon1	c.C273A	p.T91T	GAAGACCATTTCT		174	11	0.06	175	0	0		0	1	0	0				
CEP170	9859	broad.mit.edu;mdanderson.org	37	1	243354757	243354757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	CEP170	NM_001042405	exon8	c.C671T	p.A224V	GCAGCTGCAGATT		46	4	0.09	68	0	0		153		2	0	0.00			
ADARB2-AS1	642394	hgsc.bcm.edu	37	10	1578004	1578004	+	RNA	SNP	T	T	C	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	.	.	.	.	CTGAGTTCCCTTG		137	6	0.04	104	0	0				0	0				
NPFFR1	64106	mdanderson.org	37	10	72015064	72015064	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_022146	exon4	c.G942A	p.A314A	CCAGTGCGCGAAG		28	3	0.11	37	0	0				0	0				
PDCD11	22984	broad.mit.edu	37	10	105174894	105174894	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	PDCD11	NM_014976	exon12	c.G1504T	p.E502X	GGGGATGAGGTCA		286	6	0.02	330	0	0		160		5	0	0.00			
DUSP5	1847	hgsc.bcm.edu	37	10	112270021	112270021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_004419	exon4	c.G992T	p.G331V	GCCAAGGGGAGGC		90	5	0.06	113	0	0				15	0	0.00			
NRAP	4892	hgsc.bcm.edu	37	10	115356933	115356933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	NRAP,uveal_tract,malignant_melanoma,-1,1	NRAP	NM_001261463	exon37	c.G4343A	p.R1448H	TTTTTACGGTACT		85	4	0.05	99	0	0		-1	1	0	0				
PHF21A	51317	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46001326	46001326	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	PHF21A	NM_016621	exon6	c.C345T	p.N115N	AGTCAGGTTGGGA		96	17	0.18	119	2	0.0168067227		107		7	3	0.43			
DAK	26007	mdanderson.org	37	11	61113960	61113960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_015533	exon18	c.G1713T	p.E571D	CTTGGAGGTCTTG		17	2	0.12	24	0	0				44	0	0.00			
NXF1	10482	broad.mit.edu;mdanderson.org	37	11	62568854	62568854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	NXF1,mucosal,malignant_melanoma,0,1	NXF1	NM_006362	exon8	c.C745A	p.R249S	TTCTGCGATTCAG		45	3	0.07	60	0	0		67	1	44	0	0.00			
LRP5	4041	mdanderson.org	37	11	68115598	68115598	+	Silent	SNP	G	G	A	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_002335	exon2	c.G375A	p.T125T	CTGGACGGACTCA		51	3	0.06	72	0	0				0	0				
FUT4	2526	mdanderson.org	37	11	94278020	94278020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_002033	exon1	c.G721T	p.D241Y	CACCGCGACCTCG		25	2	0.08	30	0	0				4	0	0.00			
TRAPPC4	51399	mdanderson.org	37	11	118889660	118889660	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_016146	exon1	c.G155T	p.G52V	CTTTCGGCCAGCG		44	3	0.07	54	0	0				154	0	0.00			
ROBO3	64221	mdanderson.org	37	11	124749826	124749826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	ROBO3_ENST00000397801,mouth,carcinoma,-1,1	ROBO3_ENST00000397801	NM_022370	exon26	c.C3940T	p.R1314W	GCCCAGCGGGTGC		30	3	0.10	65	0	0		-1	1	12	0	0.00			
PRH1-PRR4	0	hgsc.bcm.edu	37	12	11243716	11243716	+	RNA	SNP	T	T	C	rs199540487	bycluster	TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	.	.	.	.	CACACATATATAT		9	4	0.44	6	0	0				0	0				
ETV6	2120	mdanderson.org	37	12	11905470	11905470	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001987	exon2	c.G120T	p.A40A	TCGAGCGCTCAGG		45	3	0.07	37	0	0				1	0	0.00			
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	31632964	31632964	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	DENND5B,NS,carcinoma,+2,1	DENND5B	NM_144973	exon3	c.A463T	p.M155L	AGTCCATACTGCA		168	7	0.04	183	0	0		2	1	1	1	1.00			
RAPGEF3	10411	mdanderson.org	37	12	48141538	48141538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001098531	exon14	c.G1430A	p.G477D	ATGGAGCCATACA		30	3	0.10	31	0	0				1	0	0.00			
RARG	5916	ucsc.edu	37	12	53609563	53609563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	RARG	NM_000966	exon4	c.G200A	p.S67N	CTGGTGCTCTGTG		38	4	0.11	34	0	0		53		4	0	0.00			
DLGAP5	9787	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	55655696	55655696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_014750	exon2	c.C202A	p.Q68K	GCCCTTGAGATGT		232	12	0.05	228	0	0				11	3	0.27			
PSMC1	5700	mdanderson.org	37	14	90726472	90726472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_002802	exon3	c.A71G	p.K24R	AAAAGAAATATGA		14	2	0.14	13	0	0				6	0	0.00			
UNC79	57578	broad.mit.edu	37	14	94079317	94079317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	UNC79,NS,carcinoma,+1,2	UNC79	NM_020818	exon27	c.G3398T	p.R1133L	TCAAGCGACACCT		151	3	0.02	182	1	0.0054945055		366	2	0	0				
.	28454	bcgsc.ca	37	14	107179022	107179022	+	RNA	SNP	C	C	T	rs2157615	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	.	.	.	.	CACATTCCACTAG		326	11	0.03	399	4	0.0100250627				101	16	0.16	rescued with RNA-seq		
.	0	broad.mit.edu	37	15	23407139	23407140	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	.	.	.	.	TGCCTCCACATCT		656	24	0.04	688	0	0				0	0				
WDR76	79968	broad.mit.edu	37	15	44134649	44134649	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	WDR76	NM_024908	exon6	c.G769T	p.E257X	ACTTCTGAAAATC		465	7	0.02	453	1	0.0022075055		34		4	0	0.00			
USP3	9960	broad.mit.edu	37	15	63852125	63852125	+	Silent	SNP	A	A	G	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	USP3	NM_006537	exon7	c.A603G	p.A201A	AACAGCAGGAAGG		300	4	0.01	269	0	0		37		4	0	0.00			
IFT140	9742	broad.mit.edu	37	16	1574556	1574556	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	IFT140	NM_014714	exon24	c.C3138A	p.C1046X	TACCTTGCACAGG		52	4	0.08	73	0	0		128		0	0				
KATNB1	10300	mdanderson.org	37	16	57787863	57787863	+	Missense_Mutation	SNP	C	C	T	rs143811277	bycluster	TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	KATNB1,rectum,carcinoma,0,1	KATNB1	NM_005886	exon13	c.C1184T	p.T395M	GTCGGACGCCACC		55	4	0.07	55	0	0	0	0	1	38	0	0.00			
PSKH1	5681	bcgsc.ca	37	16	67942635	67942635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	PSKH1	.	.	.	.	GGAGAGGATGCCC		73	5	0.07	69	0	0		28		4	0	0.00			
MLYCD	23417	broad.mit.edu	37	16	83949014	83949014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	MLYCD	NM_012213	exon5	c.T1402C	p.Y468H	ACCTCCTACCTCG		98	4	0.04	114	0	0		27		14	0	0.00			
PIEZO1	9780	mdanderson.org	37	16	88788277	88788277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001142864	exon37	c.C5153T	p.A1718V	AGCATGGCCCACA		34	3	0.09	51	0	0				9	0	0.00			
FAM101B	359845	broad.mit.edu	37	17	295726	295726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	FAM101B	.	.	.	.	GACGCTGGACTCT		372	4	0.01	438	2	0.00456621		19		2	0	0.00			
DNAH9	1770	mdanderson.org	37	17	11502151	11502151	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001372	exon1	c.G336T	p.G112G	TCCAGGGCCCGAC		18	3	0.17	12	0	0				0	0				
TVP23C	201158	bcgsc.ca	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	.	.	.	.	GTGTTCCGCAAAA		417	11	0.03	444	7	0.0157657658				0	0				
FLJ36000	0	broad.mit.edu	37	17	21911343	21911346	+	RNA	DEL	GTTT	GTTT	-	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	GTTT	GTTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	.	.	.	.	CTGTCGGTTTGTT		7	2	0.29	4	0	0				0	0				
AP2B1	163	mdanderson.org	37	17	33984625	33984625	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001030006	exon14	c.G1804T	p.A602S	ACTGATGCAGGTG		92	5	0.05	143	0	0				34	0	0.00			
CD300C	10871	mdanderson.org	37	17	72537829	72537829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_006678	exon4	c.C574A	p.L192M	GGGGCAGCTCCAA		39	3	0.08	50	0	0				6	0	0.00			
ICT1	3396	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	73016470	73016470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	ICT1,medulla,primitive_neuroectodermal_tumour-medulloblastoma,0,1	ICT1	NM_001545	exon4	c.C346T	p.R116W	CCCGTGCGGCAGA		149	10	0.07	166	0	0		0	1	68	7	0.10			
TRIM65	201292	mdanderson.org	37	17	73888874	73888874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001256124	exon2	c.C472A	p.Q158K	GTAGCTGGCCTTC		28	4	0.14	23	0	0				8	0	0.00			
AP3D1	8943	broad.mit.edu	37	19	2116651	2116651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	AP3D1,NS,carcinoma,+1,1	AP3D1	NM_001261826	exon17	c.C1954A	p.R652S	TGGGACGCCGCTG		83	4	0.05	95	0	0		81	1	26	0	0.00			
TMIGD2	126259	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	4292623	4292623	+	Silent	SNP	T	T	C	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_144615	exon5	c.A822G	p.K274K	GAACCCTTTTGGC		93	4	0.04	81	0	0				16	0	0.00			
PTPRS	5802	broad.mit.edu	37	19	5212058	5212058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	PTPRS	NM_002850	exon32	c.C4973A	p.A1658E	CTGCGTGCGGGCA		54	3	0.06	69	0	0		169		13	0	0.00			
EVI5L	115704	mdanderson.org	37	19	7927945	7927945	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001159944	exon17	c.G2035T	p.E679X	GAGCTGGAGATCC		13	2	0.15	16	0	0				14	0	0.00			
CCDC105	126402	mdanderson.org	37	19	15122038	15122038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_173482	exon1	c.G401T	p.R134L	GAGCGCGCCTCAC		23	2	0.09	35	1	0.0285714286				0	0				
FAM187B	148109	mdanderson.org	37	19	35719549	35719549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_152481	exon1	c.C35A	p.A12D	GGGGCAGCAAAGT		39	3	0.08	62	0	0				0	0				
TMEM147	10430	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36038332	36038332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	TMEM147	NM_032635	exon7	c.G658T	p.V220F	GCCGTTGTCAATG		72	6	0.08	88	0	0		13		347	97	0.28			
ZNF585A	199704	broad.mit.edu	37	19	37643731	37643731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	ZNF585A	NM_199126	exon6	c.C905A	p.T302N	CACTCAGTACATA		144	5	0.03	109	0	0		117		0	0				
PSG6	5675	mdanderson.org	37	19	43411800	43411800	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_002782	exon4	c.G913T	p.G305X	AGGGTCCTGTTTC		66	4	0.06	51	0	0				0	0				
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56223293	56223293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_176820	exon8	c.G2716A	p.A906T	CTGCGGCGATGTC		128	8	0.06	147	0	0				486	93	0.19			
.	400986	broad.mit.edu	37	2	96643928	96643928	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	.	.	.	.	AATTAGTTCAAAA		62	5	0.08	64	0	0				0	0				
ANKRD36B	57730	broad.mit.edu	37	2	98192550	98192550	+	RNA	DEL	T	T	-	rs370632971		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	.	.	.	.	TGACTATTAAAAA		10	4	0.40	5	0	0				0	0				
CPS1	1373	broad.mit.edu	37	2	211507237	211507237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	CPS1	NM_001122633	exon26	c.G3007T	p.V1003F	TGTGCTGTCTCTA		163	5	0.03	160	0	0		485		3	0	0.00			
SNED1	25992	mdanderson.org	37	2	241979822	241979822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001080437	exon8	c.G1265T	p.C422F	TTCGCTGTGAGAC		47	3	0.06	47	0	0				0	0				
NCOA6	23054	broad.mit.edu	37	20	33345723	33345723	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	NCOA6	NM_014071	exon7	c.G828A	p.Q276Q	TTGTTGCTGCTGC		82	5	0.06	81	2	0.024691358		219		0	0				
COL9A3	1299	mdanderson.org	37	20	61461161	61461161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001853	exon22	c.G1151A	p.R384Q	GCCACCGGGGCTC		44	3	0.07	40	0	0				6	0	0.00			
IGSF11	152404	broad.mit.edu	37	3	118623632	118623632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	IGSF11	NM_001015887	exon6	c.C717A	p.N239K	TCCAATGTTCCTG		341	4	0.01	389	0	0		122		0	0				
MFSD7	84179	mdanderson.org	37	4	676590	676590	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_032219	exon9	c.A1241G	p.E414G	GGATCCTCCCCCT		39	3	0.08	47	0	0				12	0	0.00			
RBM46	166863	broad.mit.edu	37	4	155720331	155720331	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	RBM46	NM_144979	exon4	c.C1017T	p.S339S	AGAGAGCCACCCA		254	5	0.02	291	1	0.0034364261		76		3	0	0.00			
PRRC2A	7916	mdanderson.org	37	6	31595777	31595777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_004638	exon12	c.C1526T	p.A509V	AGCCTGCTGCCCC		39	3	0.08	52	0	0				14	0	0.00			
BEND3	57673	mdanderson.org	37	6	107390550	107390550	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001080450	exon5	c.C1845A	p.R615R	GTAGTGGCGGATG		42	3	0.07	54	0	0				4	0	0.00			
GPC2	221914	mdanderson.org	37	7	99769823	99769823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_152742	exon6	c.G910A	p.A304T	TATCAGCCAGGAT		45	3	0.07	53	0	0				26	0	0.00			
GIGYF1	64599	mdanderson.org	37	7	100279560	100279560	+	Silent	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_022574	exon23	c.C2982A	p.T994T	GAGTTTGGTGCTG		38	3	0.08	33	0	0				120	0	0.00			
FAM185A	222234	broad.mit.edu	37	7	102401776	102401776	+	Silent	SNP	T	T	G	rs2537454		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	FAM185A	NM_001145268	exon4	c.T711G	p.G237G	AGATGGTTTGCTG		457	5	0.01	432	1	0.0023148148		10		3	0	0.00			
KCND2	3751	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	120385930	120385930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	KCND2	NM_012281	exon5	c.C1564A	p.Q522K	TCTTCACAACAAG		235	22	0.09	240	1	0.0041666667		194		0	0				
SGK223	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	8234017	8234017	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001080826	exon2	c.G1902A	p.Q634Q	CCGGCACTGACGA		151	10	0.07	135	0	0				1	0	0.00			
RP1L1	94137	bcgsc.ca	37	8	10465990	10465990	+	Missense_Mutation	SNP	T	T	C	rs200622636	bycluster;byfrequency	TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	RP1L1	NM_178857	exon4	c.A5618G	p.D1873G	TCTACATCTTCTG		87	14	0.16	79	0	0		453		0	0				
PDE7A	5150	broad.mit.edu	37	8	66695027	66695027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	PDE7A	NM_001242318	exon2	c.C190A	p.R64S	GCATACGAATGTA		377	6	0.02	324	1	0.0030864198		78		2	0	0.00			
CRH	1392	mdanderson.org	37	8	67089599	67089599	+	Silent	SNP	C	C	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_000756	exon2	c.G114A	p.P38P	GTGCTGCGGCGCC		15	2	0.13	12	0	0				0	0				
FAM122A	116224	mdanderson.org	37	9	71395191	71395191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_138333	exon1	c.C111A	p.S37R	TAACAGCGCCCCC		48	3	0.06	63	0	0				9	0	0.00			
C9orf57	138240	mdanderson.org	37	9	74667321	74667321	+	Missense_Mutation	SNP	C	C	T	rs372012691	alternate_allele	TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	C9orf57_ENST00000377024,NS,carcinoma,0,2	C9orf57_ENST00000377024	NM_001128618	exon5	c.G377A	p.C126Y	TTTGTGCAGCCTT		95	5	0.05	85	0	0		0	2	0	0				
ZNF883	169834	broad.mit.edu	37	9	115760275	115760276	+	RNA	DEL	TT	TT	-	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	TT	TT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_001101338	exon5	c.264_265del	p.88_89del	GGACTCTTTGATG		136	9	0.07	152	0	0				4	0	0.00			
NTNG2	84628	broad.mit.edu	37	9	135073687	135073687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	NTNG2,NS,carcinoma,-1,1	NTNG2	NM_032536	exon3	c.G548A	p.R183H	GGGCCCGCGACAT		64	3	0.05	58	0	0		66	1	1	0	0.00			
NOTCH1	4851	mdanderson.org	37	9	139412617	139412617	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_017617	exon7	c.C1227A	p.C409X	CTGGCTGCAGGCC		39	3	0.08	41	0	0				0	0				
RNR1	6052	hgsc.bcm.edu	37	MT	754	754	+	RNA	SNP	A	A	G	rs201831870	alternate_allele	TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	.	.	.	.	GGAACAAGCATCA		278	123	0.44	234	0	0				0	0				
NUDT10	170685	broad.mit.edu	37	X	51076095	51076095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	NUDT10	NM_153183	exon2	c.C278A	p.T93K	ACAGAACGTACGT		358	6	0.02	331	1	0.003021148		28		8	0	0.00			
ZNF711	7552	mdanderson.org	37	X	84510318	84510318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VF-A8AE-01A-11D-A435-10	TCGA-VF-A8AE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd37d4b1-1965-4ebc-8f2b-dca4866f2253	f62cd451-1502-489e-b70d-1fbff4f809d1	.	.	NM_021998	exon4	c.G133T	p.V45F	GTTTCAGTTCCTG		126	5	0.04	151	0	0				0	0				
