Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
CCDC18	0	broad.mit.edu	37	1	93744309	93744310	+	RNA	INS	-	-	T	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	CCDC18	.	.	.	.	ATGCAAATTTTTT		6	3	0.50	8	0	0		93		0	0				
IGSF3	3321	ucsc.edu;bcgsc.ca	37	1	117142641	117142641	+	Missense_Mutation	SNP	G	G	A	rs76417519	bycluster;byfrequency	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	IGSF3	NM_001542	exon8	c.C2011T	p.R671W	TCTTCCGCCACAG		83	10	0.12	70	3	0.0428571429		294		49	0	0.00			
SEC22B	9554	broad.mit.edu	37	1	145116147	145116148	+	RNA	INS	-	-	A	rs113058116	bycluster	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	GATTGTTATTTCG		6	2	0.33	7	0	0				91	0	0.00			
HRNR	388697	bcgsc.ca	37	1	152188062	152188062	+	Missense_Mutation	SNP	T	T	C	rs79940627	bycluster;byfrequency	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	HRNR	NM_001009931	exon3	c.A6043G	p.T2015A	CATGGGTAGAGGA		227	11	0.05	237	2	0.0084388186		403		0	0				
BROX	148362	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	222903028	222903028	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_144695	exon10	c.C823T	p.Q275X	TCTCTCCAAGAAG		95	8	0.08	124	0	0				27	1	0.04			
SKIDA1	387640	mdanderson.org	37	10	21806050	21806050	+	Silent	SNP	A	A	G	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_207371	exon4	c.T702C	p.A234A	GGCGGCAGCAGCG		19	8	0.42	19	0	0				0	0				
SKIDA1	387640	mdanderson.org	37	10	21806056	21806056	+	Silent	SNP	G	G	A	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_207371	exon4	c.C696T	p.A232A	AGCAGCGGCGGCG		25	12	0.48	20	0	0				0	0				
ENTPD1-AS1	0	hgsc.bcm.edu	37	10	97684298	97684298	+	RNA	SNP	T	T	A	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	ATATATTTTCCTT		134	8	0.06	168	0	0				0	0				
.	728658	bcgsc.ca	37	10	98510149	98510149	+	RNA	SNP	T	T	C	rs186308547	by1000genomes	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	GGTGGTTGTACGC		53	7	0.13	52	0	0				144	104	0.72			
.	728658	bcgsc.ca	37	10	98510250	98510250	+	RNA	SNP	T	T	G	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	CCCGAGTCCCCTA		67	12	0.18	85	0	0				191	82	0.43			
MUC6	4588	bcgsc.ca	37	11	1017900	1017900	+	Missense_Mutation	SNP	G	G	T	rs77920671	bycluster;byfrequency	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	MUC6	NM_005961	exon31	c.C4901A	p.P1634H	TGGGTAGGGGTGA		184	9	0.05	286	4	0.013986014		408		0	0				
.	390053	bcgsc.ca;mdanderson.org	37	11	5141902	5141902	+	RNA	SNP	T	T	C	rs10837374	bycluster;byfrequency;by1000genomes	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	AATGTGTTTGGTC		75	5	0.07	108	0	0				0	0				
MMP1	4312	mdanderson.org	37	11	102668807	102668807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_002421	exon1	c.C17A	p.P6Q	AGCAGTGGAGGAA		33	3	0.09	29	0	0				1	0	0.00			
NACA	4666	bcgsc.ca	37	12	57110530	57110530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	NACA	.	.	.	.	TTGGGGGATGGGG		98	6	0.06	89	0	0		131		1	0	0.00			
.	0	broad.mit.edu	37	14	106573362	106573364	+	RNA	DEL	ACC	ACC	-	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	ACC	ACC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	GGTACTACCACTA		326	3	0.01	317	0	0				96	0	0.00			
.	0	broad.mit.edu	37	15	20588563	20588563	+	RNA	SNP	A	A	G	rs2291972	bycluster;byfrequency;by2hit2allele	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	TTGCAGAAGCCCA		70	4	0.06	69	0	0				17	0	0.00			
.	0	bcgsc.ca	37	16	32626855	32626855	+	RNA	SNP	A	A	G	rs28446891	bycluster;byfrequency	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	ACAGACATGCCCA		160	7	0.04	181	1	0.0055248619				0	0				
ZNF276	92822	hgsc.bcm.edu	37	16	89793728	89793728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_001113525	exon5	c.G1048T	p.D350Y	TCGGATGATCGGG		117	5	0.04	128	0	0				20	0	0.00			
.	388363	bcgsc.ca	37	17	26794863	26794863	+	RNA	SNP	T	T	C	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	CAAGATTGTGAAG		84	5	0.06	80	0	0				48	38	0.79			
TXNDC2	84203	hgsc.bcm.edu	37	18	9886918	9886918	+	Missense_Mutation	SNP	A	A	G	rs142946305	bycluster	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	TXNDC2_ENST00000306084,NS,carcinoma,0,4	TXNDC2_ENST00000306084	NM_001098529	exon2	c.A442G	p.N148D	GAGAGTAACATCC		71	4	0.06	120	1	0.0083333333	0	0	4	0	0				
ATCAY	85300	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	3909500	3909500	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	ATCAY	NM_033064	exon7	c.663delC	p.S221fs	AGCAGCTTAGAGC		54	16	0.30	81	0	0		84		8	0	0.00			
.	0	bcgsc.ca	37	19	22868665	22868665	+	Missense_Mutation	SNP	A	A	G	rs148261119	bycluster;byfrequency;by1000genomes	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	CTTACTACACATA		90	5	0.06	105	0	0				1	0	0.00			
.	2866	bcgsc.ca;mdanderson.org	37	19	35863014	35863014	+	Silent	SNP	C	C	T	rs145254622	bycluster;byfrequency;by1000genomes	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	TATCTGCGGTGAA		74	6	0.08	109	0	0				0	0				
.	0	bcgsc.ca	37	19	41414408	41414408	+	Missense_Mutation	SNP	C	C	G	rs17656995	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	TAGTTTCGTGGGA		115	7	0.06	135	0	0				1	0	0.00			
B3GNT8	374907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41932262	41932262	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_198540	exon3	c.G422C	p.S141T	GAGCAGCTGGAGA		68	23	0.34	113	0	0				3	0	0.00			
PSG7	5676	broad.mit.edu	37	19	43440069	43440070	+	RNA	INS	-	-	AA	rs147024666	bycluster;by1000genomes;alternate_allele	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	CACAAACACACAC		12	5	0.42	9	0	0				0	0				
.	0	broad.mit.edu	37	2	38709067	38709067	+	RNA	SNP	A	A	G	rs113173138		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	TTATCCAAAATGT		32	4	0.13	34	0	0				54	50	0.93			
.	0	broad.mit.edu	37	2	38709079	38709079	+	RNA	SNP	C	C	T	rs111340107	bycluster;byfrequency;by1000genomes	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	TTTCATCGTGGGA		35	4	0.11	42	0	0				48	26	0.54			
GYPC	2995	bcgsc.ca	37	2	127413734	127413734	+	Missense_Mutation	SNP	C	C	G	rs11542968	bycluster;byfrequency;by1000genomes	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	GYPC	.	.	.	.	CCGCTTCCTCTCG		29	4	0.14	25	0	0		27		3	0	0.00			
.	0	bcgsc.ca	37	2	132591478	132591478	+	RNA	SNP	T	T	C	rs7597931	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	GCCCAGTCCAGGG		19	4	0.21	24	0	0				0	0				
NECAB3	63941	mdanderson.org	37	20	32247749	32247749	+	Silent	SNP	G	G	T	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_031231	exon7	c.C585A	p.R195R	GGCTCGGCGTCCT		36	3	0.08	31	0	0				41	1	0.02			
ELMO2	63916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45017782	45017782	+	Silent	SNP	C	C	T	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_182764	exon6	c.G321A	p.L107L	CTTGGCCAGCTCC		94	19	0.20	64	0	0				35	8	0.23			
LIME1	54923	mdanderson.org	37	20	62369750	62369750	+	Silent	SNP	C	C	T	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_017806	exon5	c.C483T	p.S161S	GGCCAGCCCTGTG		26	3	0.12	25	0	0				44	0	0.00			
TCF20	6942	bcgsc.ca;mdanderson.org	37	22	42608414	42608414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	TCF20	NM_181492	exon1	c.C2898A	p.S966R	TCCAGGGCTGGCA		125	7	0.06	147	0	0		164		41	0	0.00			
.	0	bcgsc.ca	37	3	72926390	72926390	+	RNA	SNP	A	A	G	rs7610496	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	TTATTCAGTGAAC		229	9	0.04	208	0	0				0	0				
TLR1	7096	broad.mit.edu	37	4	38798148	38798148	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	TLR1	NM_003263	exon4	c.2305delT	p.W769fs	TAGCCCAAAAAAG		164	7	0.04	178	0	0		70		10	0	0.00			
.	9425	bcgsc.ca;mdanderson.org	37	6	4735071	4735071	+	Missense_Mutation	SNP	C	C	G	rs28360500	bycluster;byfrequency;by1000genomes	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	CDYL,NS,carcinoma,0,1	.	.	.	.	.	CTCCCGCTTTACA		65	5	0.08	95	0	0			1	0	0				
ITPR3	3710	hgsc.bcm.edu;mdanderson.org	37	6	33638140	33638140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_002224	exon19	c.G2228T	p.R743L	TGGACCGCCAGTA		60	4	0.07	89	0	0				58	0	0.00			
CCDC170	80129	mdanderson.org	37	6	151815308	151815308	+	Silent	SNP	G	G	A	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	NM_025059	exon1	c.G45A	p.S15S	CGCTTCGCCAGCG		13	2	0.15	15	0	0				0	0				
.	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	1733102	1733102	+	Missense_Mutation	SNP	G	G	T	rs4720922	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	CACCCAGACAGGT		203	9	0.04	228	1	0.0043859649				0	0				
.	135942	bcgsc.ca	37	7	143815824	143815824	+	RNA	SNP	C	C	T	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	GGCCGCCAGGATG		84	5	0.06	60	0	0				0	0				
CDCA2	157313	ucsc.edu	37	8	25364715	25364715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	CDCA2,NS,carcinoma,0,3	CDCA2	NM_152562	exon15	c.G2533A	p.E845K	CATTTGGAAAAAA		124	3	0.02	76	0	0		78	3	106	17	0.16	rescued with RNA-seq		
.	441391	bcgsc.ca	37	9	30690221	30690221	+	RNA	SNP	G	G	C	rs12340776	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	CCAAGCGGTGGTG		222	15	0.07	276	0	0				0	0				
.	0	bcgsc.ca	37	9	90796001	90796001	+	RNA	SNP	G	G	A	rs3818707	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	TTCAAGGCCCTGT		70	6	0.09	93	0	0				0	0				
RNR2	6053	hgsc.bcm.edu;broad.mit.edu	37	MT	1824	1824	+	RNA	SNP	T	T	C	novel		TCGA-W4-A7U4-01A-12D-A435-10	TCGA-W4-A7U4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	93e5db42-7b98-42ed-bb10-42cc65aa7f42	3a394593-a286-4619-ac57-928781488648	.	.	.	.	.	.	ATAATATAGCAAG		23	8	0.35	23	0	0				0	0				
