Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
MTHFR	4524	mdanderson.org	37	1	11854012	11854012	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_005957	exon9	c.C1482A	p.S494S	GGGGTCGGAGGAC		34	3	0.09	46	0	0				21	0	0.00			
TMEM53	79639	broad.mit.edu	37	1	45120704	45120704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	TMEM53	NM_024587	exon3	c.C361A	p.R121S	CGTAGCGGTACAG		70	3	0.04	66	0	0		40		49	0	0.00			
KCNN3	3782	hgsc.bcm.edu	37	1	154842235	154842236	+	In_Frame_Ins	INS	-	-	GCTGCTGCTGCTGCT	rs66925179		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	KCNN3	NM_001204087	exon1	c.206_207insAGCAGCAGCAGCAGC	p.Q69delinsQQQQQQ	TGCTGCTGCTGCT		70	14	0.20	66	0	0		141		15	0	0.00			
MIR548F1	100302192	hgsc.bcm.edu	37	1	186120944	186120944	+	RNA	SNP	A	A	C	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	.	.	.	.	AGAAAAATACGTG		106	24	0.23	127	0	0				0	0				
PM20D1	148811	mdanderson.org	37	1	205814017	205814017	+	Silent	SNP	C	C	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_152491	exon4	c.G498A	p.L166L	GGCCTGCAGTAAT		35	3	0.09	37	0	0				0	0				
OR13G1	441933	mdanderson.org	37	1	247835618	247835618	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	OR13G1,NS,malignant_melanoma,0,2	OR13G1	NM_001005487	exon1	c.C726A	p.L242L	CACTGTGAGATGA		68	4	0.06	105	0	0		0	2	0	0				
VCL	7414	broad.mit.edu	37	10	75854211	75854211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	VCL	NM_003373	exon11	c.G1535A	p.R512H	ATGACCGTGGAGT		154	4	0.03	178	1	0.0056179775		77		49	0	0.00			
KIF20B	9585	broad.mit.edu	37	10	91497687	91497687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	KIF20B,colon,carcinoma,-1,1	KIF20B	NM_016195	exon20	c.G2969T	p.G990V	TTTTAGGTAATGA		150	5	0.03	141	0	0		191	1	29	0	0.00			
MUC5B	727897	mdanderson.org	37	11	1247926	1247926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	MUC5B,colon,carcinoma,+1,2	MUC5B	NM_002458	exon4	c.G281A	p.R94H	TCTTCCGCTTCCC		52	3	0.06	89	0	0		1	2	0	0				
DUSP8	1850	mdanderson.org	37	11	1579076	1579076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_004420	exon6	c.G769A	p.A257T	CGATGGCGATGGT		49	3	0.06	65	0	0				5	0	0.00			
ART5	116969	mdanderson.org	37	11	3661510	3661510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001079536	exon3	c.C149T	p.A50V	GGGGCTGCCTTCT		60	5	0.08	99	0	0				39	0	0.00			
CCKBR	887	mdanderson.org	37	11	6290931	6290931	+	Missense_Mutation	SNP	G	G	T	rs141038981	bycluster;by1000genomes	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	CCKBR_ENST00000525462,NS,carcinoma,-1,4	CCKBR_ENST00000525462	NM_176875	exon2	c.G184T	p.A62S	CTTTACGCAGTGA		46	3	0.07	88	0	0		-1	4	2	0	0.00			
STX5	6811	mdanderson.org	37	11	62594629	62594629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_003164	exon5	c.C421A	p.Q141K	TCACCTGTTTGAT		32	3	0.09	61	0	0				27	0	0.00			
NRXN2	9379	mdanderson.org	37	11	64428409	64428409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_015080	exon10	c.C2001A	p.S667R	GTCTCGGCTACGC		46	4	0.09	67	0	0				82	0	0.00			
ATG2A	23130	mdanderson.org	37	11	64668089	64668089	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_015104	exon31	c.C4341A	p.G1447G	TGAGAGGCCAGTT		23	3	0.13	28	0	0				228	0	0.00			
SPTBN2	6712	mdanderson.org	37	11	66468434	66468434	+	Missense_Mutation	SNP	C	C	A	rs199703911	alternate_allele	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_006946	exon16	c.G3136T	p.G1046C	CCCAGCCGGTCTG		16	2	0.13	35	0	0				14	0	0.00			
RHOD	29984	mdanderson.org	37	11	66837951	66837951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_014578	exon4	c.G386T	p.C129F	TGGGCTGCAAGAC		50	3	0.06	72	0	0				15	0	0.00			
ALG8	79053	bcgsc.ca;mdanderson.org	37	11	77825007	77825007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	ALG8	NM_024079	exon7	c.C702A	p.S234R	AACAAAGCTGAAA		87	5	0.06	184	0	0		54		34	0	0.00			
ALG9	79796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111728380	111728380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001077690	exon7	c.G646A	p.V216M	CCAGCACAGCAAT		37	14	0.38	75	0	0				28	21	0.75			
CEP164	22897	bcgsc.ca	37	11	117263330	117263330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	CEP164	NM_001271933	exon18	c.G2489T	p.G830V	TGGCTGGGTATGA		48	4	0.08	119	0	0		121		12	0	0.00			
VSIG2	23584	mdanderson.org	37	11	124621416	124621416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_014312	exon2	c.C122A	p.A41D	AGCTCGGCTGTCT		20	3	0.15	34	0	0				3	0	0.00			
MAGOHB	55110	broad.mit.edu	37	12	10762454	10762454	+	Silent	SNP	A	A	G	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	MAGOHB	NM_018048	exon3	c.T240C	p.P80P	AGGGGGAGGCCAC		125	4	0.03	74	0	0		17		240	0	0.00			
DDX11	1663	ucsc.edu	37	12	31244689	31244689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	DDX11	NM_030653	exon10	c.G1126A	p.A376T	CATGCGGCCACTC		173	23	0.13	112	11	0.0982142857		188		138	36	0.26			
ASIC1	41	broad.mit.edu;mdanderson.org	37	12	50471790	50471790	+	Silent	SNP	G	G	T	rs149521223	bycluster;byfrequency;alternate_allele	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	ACCN2,NS,carcinoma,0,1	.	NM_001256830	exon3	c.G819T	p.T273T	CGAGACGTCCTTC		77	4	0.05	72	0	0			1	13	0	0.00			
KRT82	3888	mdanderson.org	37	12	52790015	52790015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_033033	exon7	c.G1070A	p.R357H	TTGCAGCGCTGTG		18	2	0.11	24	0	0				0	0				
NTN4	59277	broad.mit.edu	37	12	96180865	96180865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	NTN4	NM_021229	exon2	c.G437A	p.R146H	TGGGAGCGGTCCA		83	3	0.04	112	1	0.0089285714		67		3	0	0.00			
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	23909357	23909357	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_014363	exon10	c.C8658G	p.H2886Q	TGCAAAGTGGCCA		82	27	0.33	100	0	0				19	9	0.47			
KIF26A	26153	mdanderson.org	37	14	104643748	104643748	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_015656	exon12	c.G4623T	p.G1541G	GGCCGGGCCCAGT		19	2	0.11	12	0	0				172	1	0.01			
GOLGA8DP	0	broad.mit.edu	37	15	22714031	22714032	+	RNA	INS	-	-	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	.	.	.	.	TGGCTAGAAAAAA		10	6	0.60	6	0	0				0	0				
GABRB3	2562	mdanderson.org	37	15	26812790	26812790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	GABRB3_ENST00000541819,colon,carcinoma,+1,7	GABRB3_ENST00000541819	NM_021912	exon7	c.C773A	p.T258K	AGAATCGTTATCA		53	3	0.06	59	0	0		1	7	7	0	0.00			
SPTBN5	51332	mdanderson.org	37	15	42177937	42177937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_016642	exon7	c.C1411A	p.R471S	ACCTGCGGGCCAC		26	3	0.12	38	0	0				0	0				
TTBK2	146057	mdanderson.org	37	15	43067340	43067340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_173500	exon13	c.T1991C	p.L664P	GCTGTAAGGGGTC		22	3	0.14	32	0	0				3	0	0.00			
ARID3B	10620	broad.mit.edu	37	15	74836313	74836313	+	Silent	SNP	G	G	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	ARID3B,rectum,carcinoma,0,2	ARID3B	NM_006465	exon2	c.G36A	p.Q12Q	GCAGCAGCAACAA		107	5	0.05	110	0	0		35	2	42	0	0.00			
.	0	bcgsc.ca	37	15	90479942	90479942	+	RNA	SNP	C	C	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	.	.	.	.	CATAGGCCTGCAA		24	4	0.17	37	0	0				0	0				
ZNF710	374655	mdanderson.org	37	15	90617483	90617483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_198526	exon4	c.G1786T	p.V596F	ATGAAGGTCAAGC		46	3	0.07	62	0	0				61	0	0.00			
SV2B	9899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91810817	91810817	+	Silent	SNP	G	G	T	rs368688126	alternate_allele	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_014848	exon9	c.G1152T	p.G384G	GATGGGGCCCTAC		133	39	0.29	192	0	0				1	1	1.00			
CACNA1H	8912	broad.mit.edu	37	16	1245464	1245464	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	CACNA1H	NM_021098	exon4	c.G444T	p.A148A	TTTTGCGGTGGAG		63	3	0.05	156	0	0		317		4	0	0.00			
SPSB3	90864	mdanderson.org	37	16	1828458	1828458	+	Silent	SNP	G	G	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_080861	exon3	c.C282T	p.C94C	GCAGCGGCAGTCC		35	3	0.09	45	0	0				119	0	0.00			
C16orf89	146556	hgsc.bcm.edu	37	16	5106086	5106086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001098514	exon5	c.C731A	p.A244D	GGGTAGGCGTATC		88	4	0.05	123	0	0				0	0				
SNX29P2	440352	hgsc.bcm.edu	37	16	29375983	29375983	+	RNA	SNP	T	T	C	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	.	.	.	.	TTTTTTTTCTTTT		82	4	0.05	95	0	0				0	0				
ADCY7	113	ucsc.edu	37	16	50327364	50327364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	ADCY7	NM_001114	exon5	c.C787T	p.P263S	TGCATGCCTGACA		45	4	0.09	107	1	0.0093457944		90		15	0	0.00			
DHX38	9785	mdanderson.org	37	16	72141698	72141698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_014003	exon21	c.G2964T	p.K988N	GCCCAAGGTGGGG		44	3	0.07	39	0	0				113	0	0.00			
GSG2	83903	mdanderson.org	37	17	3627691	3627691	+	Silent	SNP	C	C	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_031965	exon1	c.C462T	p.G154G	GTGCGGCCAGCCC		45	3	0.07	56	0	0				20	0	0.00			
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3999200	3999200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_015113	exon11	c.C1838T	p.A613V	TCTTCCGCACAAA		118	30	0.25	132	0	0				39	11	0.28			
MRPL45P2	0	broad.mit.edu	37	17	45567245	45567246	+	RNA	INS	-	-	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	.	.	.	.	CCATCTCAAAAAA		6	3	0.50	6	0	0				0	0				
CDK5RAP3	80279	mdanderson.org	37	17	46052882	46052882	+	Silent	SNP	C	C	A	rs369343510	alternate_allele	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	CDK5RAP3,NS,carcinoma,0,1	CDK5RAP3	NM_176096	exon7	c.C516A	p.G172G	CTAGGGCGAAAAT		13	3	0.23	17	0	0		0	1	313	0	0.00			
CACNA1G	8913	mdanderson.org	37	17	48697094	48697094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_198385	exon34	c.G5832T	p.E1944D	CCTGGAGTGGGAG		24	3	0.13	36	0	0				1	0	0.00			
PGS1	9489	broad.mit.edu	37	17	76411043	76411043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	PGS1	NM_024419	exon8	c.C1486T	p.R496W	GTTCACCGGGACC		85	4	0.05	105	0	0		30		99	0	0.00			
RNF213	57674	broad.mit.edu	37	17	78313950	78313951	+	In_Frame_Ins	INS	-	-	GGTCTGTGA	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	RNF213	NM_001256071	exon26	c.5783_5784insGGTCTGTGA	p.M1928delinsMVCE	TCGTCATGGTCTG		72	8	0.11	87	0	0		766		23	0	0.00			
B3GNTL1	146712	broad.mit.edu	37	17	81006578	81006578	+	Silent	SNP	G	G	T	rs368812056		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	B3GNTL1	NM_001009905	exon2	c.C144A	p.T48T	CTCCATGGTACCT		97	3	0.03	134	0	0		40		3	0	0.00			
C19orf21	126353	mdanderson.org	37	19	758104	758104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_173481	exon2	c.G1158T	p.Q386H	TCCCCAGCCCGGA		35	3	0.09	48	0	0				0	0				
KDM4B	23030	mdanderson.org	37	19	5131404	5131404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_015015	exon12	c.G1633T	p.V545L	GAGCACGTGTCCT		41	3	0.07	76	0	0				33	0	0.00			
AP1M1	8907	mdanderson.org	37	19	16337286	16337286	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001130524	exon7	c.C637T	p.R213X	AAGATGCGAGTCT		25	3	0.12	29	0	0				179	0	0.00			
F2RL3	9002	mdanderson.org	37	19	17000758	17000758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_003950	exon2	c.G484T	p.G162C	ATGTATGGCTCAG		21	3	0.14	30	0	0				0	0				
SRRM5	100170229	mdanderson.org	37	19	44116881	44116881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001145641	exon1	c.G608T	p.G203V	GCTCAGGTATAGG		35	3	0.09	43	0	0				6	0	0.00			
ZNF233	353355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44778517	44778517	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001207005	exon5	c.G1704T	p.V568V	TGATGTGTGTGGG		96	19	0.20	94	0	0				14	2	0.14			
PPP5D1	100506012	ucsc.edu;bcgsc.ca	37	19	47028997	47028997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001205281	exon3	c.G280T	p.V94L	TTGTCACTTTGTC		18	4	0.22	43	0	0				1	0	0.00			
EPS8L1	54869	mdanderson.org	37	19	55593969	55593969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	EPS8L1_ENST00000310075,colon,carcinoma,0,3	EPS8L1_ENST00000310075	NM_133180	exon12	c.G1213T	p.G405W	CGCCCCGGGTGAG		48	3	0.06	53	0	0		0	3	24	0	0.00			
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32690161	32690161	+	Missense_Mutation	SNP	C	C	T	rs368963586	alternate_allele	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	BIRC6_ENST00000421745,NS,carcinoma,+2,2	BIRC6_ENST00000421745	NM_016252	exon26	c.C5285T	p.A1762V	CCCTTGCAATTTC		567	118	0.21	575	0	0		2	2	167	49	0.29			
ABCG8	64241	mdanderson.org	37	2	44071743	44071743	+	Missense_Mutation	SNP	A	A	T	rs4148211	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_022437	exon2	c.A161T	p.Y54F	TCAACTACCAGGT		48	2	0.04	58	0	0				0	0				
SMPD4	55627	ucsc.edu	37	2	130910188	130910188	+	Silent	SNP	A	A	G	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	SMPD4	NM_017951	exon20	c.T2541C	p.Y847Y	GAGGACATAGCCC		107	2	0.02	86	0	0		67		393	42	0.11	rescued with RNA-seq		
ITGA4	3676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	182358131	182358131	+	Silent	SNP	G	G	A	rs368002151		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_000885	exon11	c.G1233A	p.S411S	GATCTCGTCAACC		90	12	0.13	98	0	0				20	0	0.00			
ADRA1D	146	mdanderson.org	37	20	4202383	4202383	+	Silent	SNP	C	C	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_000678	exon2	c.G1506A	p.P502P	CCGGAACGGCCCC		22	2	0.09	30	0	0				0	0				
JPH2	57158	mdanderson.org	37	20	42788659	42788659	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_020433	exon2	c.C768A	p.G256G	GCTGGCGCCCGAG		23	3	0.13	17	0	0				0	0				
RBBP8NL	140893	mdanderson.org	37	20	60988512	60988512	+	Silent	SNP	A	A	G	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_080833	exon11	c.T1620C	p.P540P	GTGGGGAGGTGGC		22	3	0.14	38	0	0				0	0				
TRMT2A	27037	mdanderson.org	37	22	20102547	20102547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001257994	exon5	c.C946A	p.L316M	CAGTCAGCTGCTT		36	3	0.08	46	0	0				69	0	0.00			
TRMT2A	27037	mdanderson.org	37	22	20104077	20104077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001257994	exon2	c.C83A	p.T28N	GAGACGGTAGGGC		33	3	0.09	42	0	0				34	0	0.00			
DEPDC5	9681	mdanderson.org	37	22	32218702	32218702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_014662	exon24	c.G2030T	p.G677V	AGCCTGGTGACGG		48	3	0.06	70	0	0				28	0	0.00			
VILL	50853	mdanderson.org	37	3	38038598	38038598	+	Missense_Mutation	SNP	G	G	T	rs199511941	bycluster;by1000genomes;alternate_allele	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_015873	exon5	c.G481T	p.G161C	AATAAGGGTGACA		39	3	0.08	81	0	0				1	0	0.00			
NBEAL2	23218	mdanderson.org	37	3	47039154	47039154	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_015175	exon20	c.G2928T	p.G976G	CCAGGGGCCTGCC		36	3	0.08	76	1	0.0131578947				37	0	0.00			
DHX30	22907	bcgsc.ca	37	3	47887257	47887257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	DHX30	NM_138615	exon10	c.G1007T	p.R336L	CTTTGCGTGAGCT		51	4	0.08	112	0	0		101		183	0	0.00			
FAM194A	131831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	150396273	150396273	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_152394	exon10	c.G1180T	p.D394Y	CAATGTCATCAAT		377	49	0.13	261	0	0				0	0				
OTUD4	54726	broad.mit.edu	37	4	146059041	146059041	+	Silent	SNP	A	A	G	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	OTUD4,bladder,carcinoma,0,2	OTUD4	NM_001102653	exon21	c.T2691C	p.H897H	GGGAGGATGAGCC		82	5	0.06	126	2	0.0158730159		120	2	112	0	0.00			
ZNF827	152485	mdanderson.org	37	4	146823705	146823705	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	ZNF827,NS,carcinoma,+1,4	ZNF827	NM_178835	exon2	c.C706T	p.R236X	CAAATCGCATGGT		32	3	0.09	48	0	0		1	4	5	0	0.00			
PPWD1	23398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	64867809	64867809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_015342	exon5	c.A665G	p.H222R	AACTCCATACATC		195	68	0.35	186	0	0				133	79	0.59			
SGTB	54557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	65004355	65004355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	SGTB,trunk,malignant_melanoma,0,1	SGTB	NM_019072	exon4	c.C235T	p.P79S	CTTCAGGCACTGA		72	30	0.42	100	0	0		0	1	39	20	0.51			
C5orf56	441108	mdanderson.org	37	5	131811383	131811383	+	RNA	SNP	G	G	C	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	.	.	.	.	ACAGCCGGGCCTT		40	3	0.08	67	0	0				25	0	0.00			
FBXW11	23291	mdanderson.org	37	5	171303295	171303295	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_012300	exon8	c.C1152A	p.T384T	TTTGATGGTCCTG		42	3	0.07	55	0	0				95	0	0.00			
PPT2	9374	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	32123529	32123533	+	Frame_Shift_Del	DEL	CCTCT	CCTCT	-	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	CCTCT	CCTCT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	PPT2	NM_138717	exon4	c.419_423del	p.140_141del	CATCTCCCTCTCC		145	20	0.14	187	0	0		19		89	0	0.00			
RNF8	9025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	37336599	37336599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_003958	exon3	c.G580A	p.E194K	AAAGGTGAAGTGG		121	25	0.21	141	0	0				91	35	0.38			
C6orf141	135398	broad.mit.edu	37	6	49519197	49519197	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	C6orf141	NM_001145652	exon1	c.T692G	p.V231G	GGAGGGTTTCACC		97	14	0.14	84	8	0.0952380952		7		0	0				
MCM3	4172	mdanderson.org	37	6	52141891	52141891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_002388	exon8	c.C1274T	p.A425V	ACAGCAGCCGTCA		28	3	0.11	55	0	0				214	0	0.00			
KIAA1586	57691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56919177	56919177	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_020931	exon4	c.T1880A	p.I627N	AAGATATTTTTAA		202	37	0.18	237	0	0				17	5	0.29			
EYS	346007	mdanderson.org	37	6	65016865	65016865	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001142800	exon30	c.C6189A	p.C2063X	TTACCTGCAATTG		39	3	0.08	58	0	0				0	0				
HECA	51696	mdanderson.org	37	6	139487973	139487973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_016217	exon2	c.C824T	p.T275M	CACCCACGGGCTA		29	3	0.10	57	0	0				40	0	0.00			
RSPH10B	222967	broad.mit.edu	37	7	5983086	5983086	+	Nonsense_Mutation	SNP	G	G	A	rs142698648	bycluster;byfrequency	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	RSPH10B	NM_173565	exon15	c.C1627T	p.Q543X	GCTGTTGCTCACG		1410	98	0.07	1154	2	0.0017331023		28		12	0	0.00			
SLC12A9	56996	ucsc.edu;bcgsc.ca	37	7	100458762	100458762	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	SLC12A9	NM_001267812	exon10	c.G1221T	p.L407L	CCAGCTGGTGCTC		39	4	0.10	72	0	0		81		44	0	0.00			
PLXNA4	91584	broad.mit.edu	37	7	131817901	131817901	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	PLXNA4	NM_020911	exon31	c.C5496A	p.Y1832X	AGCCAGGTATGCG		59	3	0.05	95	0	0		873		2	0	0.00			
ABCF2	10061	mdanderson.org	37	7	150913107	150913107	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	ABCF2,NS,carcinoma,-1,1	ABCF2	NM_007189	exon12	c.C1347A	p.P449P	ATCTGTGGGTAGT		44	3	0.07	64	0	0		-1	1	133	0	0.00			
MNX1	3110	bcgsc.ca	37	7	156802391	156802391	+	Silent	SNP	G	G	A	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	MNX1	NM_005515	exon1	c.C654T	p.T218T	GCCCGCGGTGGAC		29	4	0.14	43	0	0		17		49	0	0.00			
SPAG1	6674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	101232531	101232532	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	TA	TA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	SPAG1	NM_172218	exon13	c.1559_1560del	p.520_520del	ATTCTCTATGAAA		108	15	0.14	124	0	0		80		18	0	0.00			
MYC	4609	mdanderson.org	37	8	128750607	128750607	+	Missense_Mutation	SNP	G	G	C	rs61752959	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	MYC,trunk,malignant_melanoma,0,1	MYC	NM_002467	exon2	c.G144C	p.Q48H	CTACCAGCAGCAG		60	5	0.08	56	2	0.0357142857		0	1	64	0	0.00			
FAM205A	259308	ucsc.edu	37	9	34726204	34726204	+	Missense_Mutation	SNP	G	G	A	rs521574	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	FAM205A	NM_001141917	exon4	c.C1033T	p.P345S	CCTGAGGAGTATT		78	26	0.33	216	10	0.0462962963		45		0	0				
LMX1B	4010	hgsc.bcm.edu;mdanderson.org	37	9	129455807	129455807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	LMX1B_ENST00000355497,bladder,carcinoma,0,2	LMX1B_ENST00000355497	NM_001174146	exon5	c.G746T	p.R249L	AGGTCCGAGAGAC		64	4	0.06	51	0	0		0	2	1	0	0.00			
FNBP1	23048	mdanderson.org	37	9	132678245	132678245	+	Silent	SNP	C	C	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_015033	exon11	c.G1185A	p.L395L	GCTTACCAGCTTG		41	3	0.07	46	0	0				8	0	0.00			
DNLZ	728489	mdanderson.org	37	9	139256497	139256497	+	Silent	SNP	A	A	G	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_001080849	exon3	c.T504C	p.G168G	GGGGGGACCCTCA		42	3	0.07	59	0	0				162	3	0.02			
ND5	4540	broad.mit.edu	37	MT	13947	13947	+	Silent	SNP	C	C	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	ENST00000361567	exon1	c.C1611T	p.I537I	CACAATCCCCTAT		4	3	0.75	17	0	0				0	0				
RBM3	5935	mdanderson.org	37	X	48434941	48434941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V3-01A-11D-A435-10	TCGA-WZ-A7V3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e7dff85e-11f0-4bd7-b76d-49ac37ad49f1	8fe77e51-5995-4d50-8699-6641bb60ad64	.	.	NM_006743	exon5	c.G362T	p.R121L	ACAGTCGACCTGG		47	3	0.06	47	0	0				2391	2	0.00			
