Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
DDX11L1	0	broad.mit.edu	37	1	13411	13411	+	RNA	DEL	C	C	-	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	.	.	.	.	CCTCCACCACCCC		12	2	0.17	16	0	0				6	0	0.00			
AGRN	375790	broad.mit.edu	37	1	955613	955613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	AGRN	NM_198576	exon1	c.G61T	p.A21S	GTGGCCGCGTGCG		5	2	0.40	12	0	0		110		0	0				
RNF186	0	broad.mit.edu	37	1	20142036	20142036	+	RNA	DEL	T	T	-	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	RNF186	.	.	.	.	TTTAACTTTTTTT		6	2	0.33	5	0	0		14		0	0				
GPN2	54707	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27216507	27216507	+	Silent	SNP	C	C	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	GPN2,NS,carcinoma,-2,1	GPN2	NM_018066	exon1	c.G81A	p.L27L	CATGCCCAGGCAG		20	5	0.25	21	0	0		18	1	16	3	0.19			
FCRL2	79368	mdanderson.org	37	1	157716685	157716685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_030764	exon11	c.C1464A	p.N488K	CCTGATGTTTGCT		22	2	0.09	22	0	0				12	0	0.00			
ARMC4	55130	ucsc.edu	37	10	28250581	28250581	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	ARMC4	NM_018076	exon10	c.A1302T	p.E434D	TGGTTCTTCATCT		153	14	0.09	127	5	0.0393700787		177		0	0				
PDCD11	22984	hgsc.bcm.edu;broad.mit.edu	37	10	105160253	105160253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_014976	exon3	c.G202T	p.A68S	AAGTCCGCAAGAG		74	4	0.05	79	0	0				118	0	0.00			
FANK1	92565	mdanderson.org	37	10	127585221	127585221	+	Nonsense_Mutation	SNP	C	C	T	rs202109621		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_145235	exon1	c.C10T	p.Q4X	GAGCCCCAGAGTA		29	3	0.10	15	0	0				7	0	0.00			
JAKMIP3	282973	mdanderson.org	37	10	133976881	133976881	+	Silent	SNP	C	C	A	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	JAKMIP3,NS,carcinoma,0,1	JAKMIP3	NM_001105521	exon19	c.C2383A	p.R795R	ATCCTGCGGGAGC		12	2	0.17	25	0	0		0	1	0	0				
MUC5B	727897	mdanderson.org	37	11	1258387	1258387	+	Missense_Mutation	SNP	G	G	A	rs202160055		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	MUC5B,NS,carcinoma,+1,4	MUC5B	NM_002458	exon25	c.G3290A	p.R1097H	CCTGCCGCTCCCA		27	3	0.11	23	1	0.0434782609		1	4	0	0				
KRTAP5-2	440021	broad.mit.edu	37	11	1619052	1619052	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	KRTAP5-2	NM_001004325	exon1	c.C429A	p.C143X	GGACTGGCAGCAG		68	3	0.04	96	0	0		38		0	0				
CDKN1C	1028	mdanderson.org	37	11	2906488	2906488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_000076	exon1	c.C232A	p.Q78K	TCCACTGCAGGCG		34	3	0.09	35	0	0				7	0	0.00			
ARAP1	116985	mdanderson.org	37	11	72404840	72404840	+	Silent	SNP	C	C	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001040118	exon28	c.G3705A	p.L1235L	AAAGTGCAGGGGG		29	3	0.10	53	0	0				112	0	0.00			
TMPRSS4	56649	mdanderson.org	37	11	117982461	117982461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_019894	exon8	c.G589T	p.G197W	GCCTGTGGGAAGA		53	3	0.06	53	0	0				0	0				
HYOU1	10525	mdanderson.org	37	11	118925732	118925732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001130991	exon6	c.C460A	p.L154I	AATTGAGAACCAT		35	3	0.09	44	0	0				124	0	0.00			
ERC1	23085	broad.mit.edu	37	12	1292505	1292505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	ERC1	NM_178040	exon11	c.A2075G	p.K692R	TGAAAAAGGACTC		705	7	0.01	428	2	0.0046728972		95		54	0	0.00			
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	25380276	25380276	+	Missense_Mutation	SNP	T	T	C	rs121913240	bycluster	TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	KRAS_ENST00000256078,colon,carcinoma,+1,429	KRAS_ENST00000256078	NM_004985	exon3	c.A182G	p.Q61R	TCCTCTTGACCTG		152	11	0.07	101	0	0		1	429	86	2	0.02			
VDR	7421	mdanderson.org	37	12	48240170	48240170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001017536	exon9	c.C1122A	p.N374K	ATGCAAGTTCAGC		36	3	0.08	45	0	0				2	0	0.00			
KRT84	3890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	52779018	52779018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_033045	exon1	c.G352A	p.G118S	GGCCACCAAAGCC		94	7	0.07	117	0	0				0	0				
CCDC41	51134	hgsc.bcm.edu	37	12	94796963	94796963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_016122	exon5	c.T400C	p.F134L	TCCTAAAACGTTC		65	4	0.06	47	0	0				19	0	0.00			
TPTE2P1	0	broad.mit.edu	37	13	25527621	25527623	+	RNA	DEL	AAC	AAC	-	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	AAC	AAC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	.	.	.	.	ATCTATAACAATA		7	3	0.43	8	0	0				0	0				
STOML3	161003	mdanderson.org	37	13	39542626	39542626	+	Silent	SNP	G	G	T	rs202188494	bycluster;alternate_allele	TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	STOML3,NS,carcinoma,+1,2	STOML3	NM_145286	exon6	c.C562A	p.R188R	CCACTCGGGCCAC		47	3	0.06	75	0	0		1	2	0	0				
LRCH1	23143	mdanderson.org	37	13	47275277	47275277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	LRCH1_ENST00000311191,NS,lymphoid_neoplasm,+1,2	LRCH1_ENST00000311191	NM_001164211	exon11	c.G1335T	p.Q445H	AGATCAGGACATG		41	3	0.07	68	0	0		1	2	12	0	0.00			
SUGT1	10910	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	53239790	53239791	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	SUGT1	NM_001130912	exon10	c.536_537del	p.179_179del	TCAAACAGAATCT		146	22	0.15	197	0	0		37		61	0	0.00			
F7	2155	mdanderson.org	37	13	113770083	113770083	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_000131	exon6	c.G540T	p.L180L	CTCTCTGCTGGCA		44	3	0.07	93	0	0				0	0				
GPHB5	122876	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	63779821	63779821	+	RNA	SNP	G	G	A	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	GPHB5	.	.	.	.	GTTCCAGAATGGG		209	36	0.17	201	1	0.0049751244		57		0	0				
GOLGA6L1	283767	broad.mit.edu	37	15	22742718	22742718	+	Missense_Mutation	SNP	T	T	A	rs77248890		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	GOLGA6L1,NS,carcinoma,0,3	GOLGA6L1	NM_001001413	exon8	c.T1103A	p.L368Q	GGAGGCTGGAGGA		102	6	0.06	99	1	0.0101010101		20	3	1	0	0.00			
CREBBP	1387	bcgsc.ca	37	16	3777942	3777942	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	CREBBP,colon,carcinoma,+1,2	CREBBP	NM_004380	exon31	c.C7106A	p.P2369H	GGCTGGGGCTGTA		44	4	0.09	67	0	0		546	2	224	0	0.00			
XYLT1	64131	mdanderson.org	37	16	17228331	17228331	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_022166	exon9	c.C2026T	p.R676X	CTCACCGGCAGCT		24	2	0.08	31	0	0				2	0	0.00			
ACD	65057	mdanderson.org	37	16	67694279	67694279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001082487	exon1	c.G103A	p.A35T	GTCCTGCTCGGGG		40	3	0.08	51	0	0				0	0				
ZCCHC14	23174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	87451243	87451243	+	Silent	SNP	C	C	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	ZCCHC14,caecum,carcinoma,-1,2	ZCCHC14	NM_015144	exon8	c.G795A	p.A265A	GCTGCCCGCATGG		47	6	0.13	74	0	0		-1	2	6	0	0.00			
RNMTL1	55178	mdanderson.org	37	17	686391	686391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_018146	exon2	c.G383A	p.R128H	AAGGTCGCAGGCT		48	3	0.06	91	0	0				45	0	0.00			
SLC35G6	643664	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	7386120	7386120	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001102614	exon2	c.G817C	p.A273P	AGCTATGCGGTCA		119	9	0.08	157	0	0				0	0				
FLJ36000	0	broad.mit.edu	37	17	21906822	21906822	+	RNA	DEL	G	G	-	rs58465113	alternate_allele	TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	.	.	.	.	GTGTGTGTGTGTG		6	2	0.33	7	0	0				1	0	0.00			
TMEM132E	124842	mdanderson.org	37	17	32962085	32962085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_207313	exon8	c.G1686T	p.E562D	ACTGGAGCCAGGC		36	3	0.08	79	0	0				0	0				
STARD3	10948	mdanderson.org	37	17	37817269	37817269	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_006804	exon13	c.G1070T	p.R357M	GGCGCAGGGACCG		46	3	0.07	74	0	0				86	0	0.00			
GRB7	2886	mdanderson.org	37	17	37903113	37903113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001242442	exon15	c.G1631T	p.C544F	TGCCGTGCTTGCT		22	3	0.14	35	0	0				36	0	0.00			
KRTAP1-1	81851	hgsc.bcm.edu;broad.mit.edu	37	17	39197304	39197304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	KRTAP1-1,NS,malignant_melanoma,0,1	KRTAP1-1	NM_030967	exon1	c.A346G	p.I116V	ACCTGATACGGGT		70	3	0.04	75	1	0.0133333333		0	1	0	0				
TMC6	11322	mdanderson.org	37	17	76120700	76120700	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001127198	exon8	c.C796G	p.L266V	CCACCAGCAGCAG		31	3	0.10	58	0	0				40	0	0.00			
TSPAN10	83882	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	79612648	79612648	+	RNA	SNP	C	C	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	TSPAN10	.	.	.	.	TGGCAGCAGAACC		32	4	0.13	40	0	0		21		4	0	0.00			
.	0	broad.mit.edu	37	18	11911003	11911004	+	RNA	INS	-	-	G	rs71172029	bycluster;by1000genomes	TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	.	.	.	.	CTCTCAAGGTGGA		9	8	0.89	10	0	0				0	0				
ONECUT3	390874	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1775247	1775247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	ONECUT3,colon,carcinoma,-2,1	ONECUT3	NM_001080488	exon2	c.A1288G	p.I430V	ACGCTGATCGCCA		131	36	0.27	134	0	0		-2	1	3	0	0.00			
DOT1L	84444	mdanderson.org	37	19	2216567	2216567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	DOT1L_ENST00000398665,NS,carcinoma,0,2	DOT1L_ENST00000398665	NM_032482	exon20	c.G2211T	p.Q737H	GCCCCAGTACCTG		29	3	0.10	21	0	0		0	2	51	0	0.00			
DOT1L	84444	mdanderson.org	37	19	2226654	2226654	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_032482	exon27	c.G4134T	p.G1378G	GGCTGGGCTGAAG		15	3	0.20	12	0	0				58	0	0.00			
SEMA6B	10501	mdanderson.org	37	19	4555566	4555566	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_032108	exon7	c.T482A	p.L161Q	GGCTGCAGGGTGT		47	3	0.06	85	0	0				21	0	0.00			
KDM4B	23030	broad.mit.edu	37	19	5047517	5047517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	KDM4B	NM_015015	exon6	c.C463T	p.R155W	AGCCTCCGGACCA		83	3	0.04	74	0	0		120		12	0	0.00			
ZNF358	140467	mdanderson.org	37	19	7585211	7585211	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	ZNF358,NS,carcinoma,+1,1	ZNF358	NM_018083	exon2	c.G1083T	p.A361A	CTCAGCGCTGCTC		27	3	0.11	34	0	0		1	1	90	0	0.00			
OLFM2	93145	bcgsc.ca	37	19	10024251	10024251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	OLFM2	.	.	.	.	TGGCCATGGTGCT		24	4	0.17	22	0	0		42		5	3	0.60			
ANKLE1	126549	broad.mit.edu	37	19	17397500	17397501	+	Frame_Shift_Del	DEL	TT	TT	-	rs10606406	alternate_allele	TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	TT	TT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	ANKLE1	.	.	.	.	TGTGTGTTTGTGT		7	6	0.86	14	0	0		27		2	0	0.00			
WDR87	83889	ucsc.edu	37	19	38377404	38377404	+	Missense_Mutation	SNP	C	C	T	rs201328117		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	WDR87	NM_031951	exon6	c.G6790A	p.E2264K	CCTCCTCCCTTAC		87	19	0.22	124	0	0		191		1	0	0.00			
EMP3	2014	mdanderson.org	37	19	48833719	48833719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001425	exon5	c.C484T	p.R162W	CGGAAGCGGGAGT		45	3	0.07	50	0	0				110	0	0.00			
ALDH16A1	126133	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49967466	49967466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_153329	exon10	c.G1277A	p.G426D	GCGGGGGCAGCGC		31	6	0.19	43	0	0				167	56	0.34			
KLK11	11012	broad.mit.edu	37	19	51528037	51528037	+	Silent	SNP	T	T	C	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	KLK11	NM_144947	exon3	c.A150G	p.G50G	GGTCTCTCCCCCT		60	3	0.05	89	1	0.0112359551		28		0	0				
FBXO11	80204	mdanderson.org	37	2	48132711	48132711	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001190274	exon1	c.A149C	p.Q50P	TGCTGCTGCGGCG		8	3	0.38	8	0	0				1	0	0.00			
ALS2CR12	130540	mdanderson.org	37	2	202195505	202195505	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_139163	exon8	c.C576A	p.Y192X	TGCTTTGTAGTTG		77	4	0.05	70	0	0				0	0				
SPTLC3	55304	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	13107267	13107267	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_018327	exon9	c.G1182T	p.S394S	TCACTCGCATAGT		106	5	0.05	124	0	0				1	0	0.00			
FRG1B	284802	mdanderson.org	37	20	29633902	29633902	+	RNA	SNP	C	C	A	rs145072022		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	.	.	.	.	AGAGAACCAAATT		173	8	0.05	190	1	0.0052631579				47	1	0.02			
TOX2	84969	hgsc.bcm.edu	37	20	42694570	42694570	+	Silent	SNP	A	A	G	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	TOX2_ENST00000348077,colon,carcinoma,0,2	TOX2_ENST00000348077	NM_001098797	exon7	c.A1179G	p.P393P	GCCGCCACCCTCC		53	3	0.06	48	0	0		0	2	18	2	0.11			
SNAI1	6615	mdanderson.org	37	20	48600448	48600448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_005985	exon2	c.C170A	p.P57Q	CGCTGCCAATGCT		44	3	0.07	52	0	0				92	0	0.00			
CEBPB	1051	mdanderson.org	37	20	48808332	48808332	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_005194	exon1	c.G762T	p.P254P	CGCGCCGGCGCCC		28	3	0.11	25	0	0				92	0	0.00			
ZDHHC8	29801	mdanderson.org	37	22	20128208	20128208	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001185024	exon6	c.G729T	p.V243V	GCACGTGCTGTGT		46	3	0.07	51	0	0				14	0	0.00			
LOC648691	0	bcgsc.ca	37	22	22901775	22901775	+	Translation_Start_Site	SNP	A	A	G	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	.	.	.	.	AGGGGGATGGTCA		78	4	0.05	49	1	0.0204081633				0	0				
HMGXB4	10042	hgsc.bcm.edu;bcgsc.ca	37	22	35661554	35661554	+	Silent	SNP	G	G	A	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001003681	exon5	c.G1173A	p.K391K	AAAAAAGAAAAAA		146	12	0.08	104	0	0				32	1	0.03			
CRYBG3	131544	mdanderson.org	37	3	97662072	97662072	+	Nonsense_Mutation	SNP	G	G	T	rs200227709	bycluster;byfrequency;alternate_allele	TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_153605	exon22	c.G8827T	p.G2943X	TTAGGAGGAAATT		35	3	0.09	35	0	0				18	0	0.00			
.	0	broad.mit.edu	37	3	114998900	114998900	+	RNA	DEL	A	A	-	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	.	.	.	.	AAATTTAAAAAAA		8	4	0.50	4	0	0				0	0				
MUC4	4585	hgsc.bcm.edu	37	3	195505877	195505877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	MUC4_ENST00000463781,NS,carcinoma,+1,1	MUC4_ENST00000463781	NM_018406	exon2	c.C12574T	p.P4192S	GAAGAGGGGTGGT		69	8	0.12	74	2	0.027027027		1	1	3	0	0.00			
TRMT44	152992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	8470016	8470016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_152544	exon9	c.A1870G	p.K624E	GGTGGAAAGCAAT		66	16	0.24	79	0	0				10	3	0.30			
SGTB	54557	mdanderson.org	37	5	65008803	65008803	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	SGTB,NS,meningioma,0,1	SGTB	NM_019072	exon3	c.C189A	p.T63T	GGAACTGGTAAAC		49	3	0.06	77	0	0		0	1	22	0	0.00			
PAIP2	51247	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	138700433	138700433	+	Splice_Site	SNP	G	G	A	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	PAIP2	NM_016480	exon3	c.318+1G>A	.	CTTGTGGTAAAAA		71	4	0.06	94	0	0		10		36	9	0.25			
DIAPH1	1729	mdanderson.org	37	5	140953766	140953766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_005219	exon16	c.C1651A	p.L551M	TTGTCAGCTTGGC		41	3	0.07	56	0	0				73	0	0.00			
UBD	10537	hgsc.bcm.edu;broad.mit.edu	37	6	29524057	29524058	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	UBD	NM_006398	exon2	c.98_99insA	p.I33fs	TCTTTGATTTTTT		134	10	0.07	133	0	0		13		1253	0	0.00			
NCOA7	135112	broad.mit.edu;mdanderson.org	37	6	126249822	126249822	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	NCOA7	NM_001199619	exon17	c.G2734T	p.G912X	TACCACGGACGAA		61	3	0.05	83	0	0		92		33	0	0.00			
HGC6.3	0	broad.mit.edu	37	6	168376821	168376821	+	RNA	SNP	T	T	C	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001129895	exon1	c.A512G	p.E171G	GGTCACTCCCCCT		190	3	0.02	222	1	0.0045045045				48	0	0.00			
SKAP2	8935	hgsc.bcm.edu;mdanderson.org	37	7	26883702	26883702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_003930	exon4	c.C254A	p.T85N	GAAATAGTGTCTG		76	4	0.05	54	0	0				21	0	0.00			
RABGEF1	27342	mdanderson.org	37	7	66273943	66273943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	RABGEF1,colon,carcinoma,+1,2	RABGEF1	NM_014504	exon9	c.G1148T	p.R383L	TTGATCGCTACAT		95	5	0.05	73	0	0		1	2	94	0	0.00			
RP1L1	94137	ucsc.edu	37	8	10474009	10474009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	RP1L1	NM_178857	exon3	c.C698T	p.A233V	CTCCTGGCATTTT		43	4	0.09	42	0	0		453		0	0				
HR	55806	mdanderson.org	37	8	21981246	21981246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_018411	exon6	c.C1831A	p.H611N	GCCAGTGGGTGTT		22	3	0.14	28	0	0				0	0				
LRRCC1	85444	broad.mit.edu	37	8	86019547	86019547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	LRRCC1,colon,carcinoma,0,2	LRRCC1	NM_033402	exon1	c.C17T	p.A6V	CGGCGGCGGTGGT		103	4	0.04	79	2	0.0253164557		212	2	4	0	0.00			
SYBU	55638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110587804	110587804	+	Silent	SNP	C	C	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_001099752	exon8	c.G1323A	p.L441L	ATCGAACAAATCT		153	24	0.16	133	0	0				1	0	0.00			
ND4	4538	broad.mit.edu;bcgsc.ca	37	MT	11356	11356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	ENST00000361381	exon1	c.C597T	p.Y199Y	AGCTTACACAATA		19	5	0.26	42	0	0				0	0				
SPIN2B	474343	broad.mit.edu	37	X	57146615	57146615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	SPIN2B	NM_001006683	exon2	c.A448G	p.M150V	AGACCATCCCCCT		406	6	0.01	376	1	0.0026595745		11		12	0	0.00			
AMMECR1	9949	mdanderson.org	37	X	109561071	109561071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_015365	exon1	c.G229T	p.G77C	CGCCGCCGCAGCC		50	4	0.08	36	1	0.0277777778				12	0	0.00			
CSAG4	0	broad.mit.edu	37	X	151896095	151896095	+	RNA	SNP	G	G	A	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	CSAG4	.	.	.	.	CAGGTAGCCTTGA		93	16	0.17	92	0	0		13		1	0	0.00			
PDZD4	57595	mdanderson.org	37	X	153069641	153069641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A8D5-01A-11D-A435-10	TCGA-WZ-A8D5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f9769d8-ba26-4ac7-91c7-7ae0494130e7	928cb9ff-09c7-4a5f-bd42-198e31335976	.	.	NM_032512	exon8	c.C1477T	p.R493W	CCCGCCGCAGGGG		21	3	0.14	38	0	0				8	0	0.00			
