Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
ACOT7	11332	mdanderson.org	37	1	6324673	6324673	+	Missense_Mutation	SNP	G	G	T	rs139667005	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ACOT7	NM_181864	exon9	c.C1127A	p.A376E	GGCTCCGCGTGGC		53	3	0.06	46	0	0		71		1150	0	0.00			
ESPNP	0	broad.mit.edu	37	1	17030903	17030905	+	RNA	DEL	GAG	GAG	-	rs55663095	alternate_allele	TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	GAG	GAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	.	.	.	.	.	ATCGACGAGGAGG		8	4	0.50	5	0	0				0	0				
AGO3	192669	bcgsc.ca;mdanderson.org	37	1	36469953	36469953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	.	NM_024852	exon6	c.G670A	p.A224T	GCCACTGCCTTCT		94	5	0.05	78	0	0				6	0	0.00			
MMACHC	25974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45973168	45973168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	.	NM_015506	exon2	c.G222A	p.M74I	CCGAATGCTGACT		116	20	0.17	115	0	0				32	6	0.19			
CTH	1491	broad.mit.edu	37	1	70877110	70877110	+	Silent	SNP	A	A	G	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	CTH	NM_153742	exon1	c.A12G	p.K4K	GGAAAAAGACGCC		207	4	0.02	202	0	0		48		244	0	0.00			
KCNA2	3737	bcgsc.ca;mdanderson.org	37	1	111147358	111147358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	KCNA2	NM_001204269	exon3	c.C47A	p.P16H	TGCCCAGGGAGGG		123	5	0.04	144	0	0		61		1	0	0.00			
ITGA10	8515	mdanderson.org	37	1	145532485	145532485	+	Missense_Mutation	SNP	G	G	T	rs151338211	alternate_allele	TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	ITGA10,NS,carcinoma,+1,1	ITGA10	NM_003637	exon9	c.G938T	p.R313L	GGCAGCGAGATCC		57	3	0.05	56	0	0		131	1	0	0				
KCNN3	3782	mdanderson.org	37	1	154698449	154698449	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	KCNN3	NM_001204087	exon6	c.C1689A	p.L563L	TTTGGTGAGTTCC		43	3	0.07	50	0	0		141		4	0	0.00			
ILDR2	387597	mdanderson.org	37	1	166890443	166890443	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ILDR2	NM_199351	exon9	c.C1385A	p.S462X	GCCCGCGACTCCG		16	2	0.13	15	0	0		79		4	0	0.00			
FMN2	56776	mdanderson.org	37	1	240255583	240255583	+	Silent	SNP	C	C	G	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	FMN2,NS,carcinoma,0,1	FMN2	NM_020066	exon1	c.C174G	p.G58G	CGGCGGCGGGGAG		28	2	0.07	33	0	0		451	1	2	0	0.00			
OR2T3	343173	broad.mit.edu	37	1	248637495	248637495	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	OR2T3	NM_001005495	exon1	c.844delT	p.F282fs	TCTGCCTTTTACA		869	7	0.01	813	0	0		79		0	0				
CUL2	8453	mdanderson.org	37	10	35300781	35300781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	CUL2	NM_001198778	exon20	c.C2158A	p.Q720K	CCTCTTGAATAAG		59	3	0.05	62	0	0		63		199	0	0.00			
ERCC6	2074	mdanderson.org	37	10	50708743	50708743	+	Splice_Site	SNP	C	C	A	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ERCC6	NM_000124	exon8	c.1527-1G>T	.	TGGTACCTATGAC		49	3	0.06	54	0	0		162		0	0				
ANXA7	310	mdanderson.org	37	10	75138760	75138760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ANXA7	NM_004034	exon13	c.C1253A	p.P418H	AAGGCAGGGCGGT		46	3	0.07	70	0	0		50		361	0	0.00			
EXOC6	54536	broad.mit.edu	37	10	94773973	94773973	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	EXOC6	NM_019053	exon20	c.G2118T	p.V706V	GCCTGTGCCAGGA		364	5	0.01	385	1	0.0025974026		147		32	0	0.00			
ZDHHC16	84287	mdanderson.org	37	10	99214534	99214534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ZDHHC16	NM_198046	exon9	c.G802T	p.V268F	AGTCTTGTCTACC		148	6	0.04	126	0	0		25		423	0	0.00			
HPS6	79803	mdanderson.org	37	10	103825727	103825727	+	Silent	SNP	C	C	A	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	HPS6	NM_024747	exon1	c.C496A	p.R166R	TGCGTCCGGACTC		16	2	0.13	18	0	0		38		31	3	0.10			
PPRC1	23082	mdanderson.org	37	10	103892979	103892979	+	Splice_Site	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PPRC1	NM_015062	exon1	c.153+1G>T	.	GAGCAGGTGAGAG		51	3	0.06	44	0	0		151		5	0	0.00			
TH	7054	mdanderson.org	37	11	2188684	2188684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	TH	NM_199292	exon7	c.G769A	p.A257T	CCTCGGCGGTGTA		54	3	0.06	69	0	0		43		0	0				
ILK	3611	mdanderson.org	37	11	6625505	6625505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ILK	NM_001014794	exon2	c.G4T	p.D2Y	GCTATGGACGACA		36	3	0.08	39	0	0		41		200	0	0.00			
ABCC8	6833	mdanderson.org	37	11	17464383	17464383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ABCC8	NM_000352	exon10	c.G1514A	p.G505D	TTGATGCCGCGGA		47	3	0.06	55	0	0		170		2	0	0.00			
PCNXL3	399909	mdanderson.org	37	11	65386388	65386388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PCNXL3	NM_032223	exon6	c.G1555A	p.A519T	CCACTGGCTGGCT		24	2	0.08	32	0	0		140		53	0	0.00			
SORL1	6653	mdanderson.org	37	11	121475015	121475015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	SORL1	NM_003105	exon33	c.G4633T	p.D1545Y	GAGAGCGATGAAA		44	3	0.07	42	0	0		218		37	0	0.00			
EMG1	10436	broad.mit.edu;mdanderson.org	37	12	7084421	7084421	+	RNA	SNP	C	C	G	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	.	.	.	.	.	CACTTTCCAGTTG		307	24	0.08	124	1	0.0080645161				2244	199	0.09			
MRPS35	60488	broad.mit.edu;mdanderson.org	37	12	27863860	27863860	+	Silent	SNP	G	G	T	rs145435105	byfrequency	TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	MRPS35	NM_001190864	exon1	c.G84T	p.S28S	CTACTCGGCCACT		95	4	0.04	61	0	0		26		729	0	0.00			
HOXC10	3226	broad.mit.edu	37	12	54379332	54379332	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	HOXC10	NM_017409	exon1	c.T289C	p.S97P	CCGCTGTCCTCCT		69	4	0.06	72	0	0		42		1	0	0.00			
RNF10	9921	mdanderson.org	37	12	120972700	120972700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	RNF10	NM_014868	exon1	c.G86A	p.G29D	CTTCGGGCAGCAG		21	2	0.10	24	0	0		75		244	0	0.00			
CDK8	1024	mdanderson.org	37	13	26956976	26956976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	CDK8	NM_001260	exon5	c.G482T	p.G161V	TTATGGGTGAAGG		52	3	0.06	55	0	0		61		19	0	0.00			
.	0	bcgsc.ca	37	14	22070772	22070772	+	RNA	SNP	C	C	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	.	.	.	.	.	GCACTCCCAGAAG		113	13	0.12	151	0	0				0	0				
PCK2	5106	mdanderson.org	37	14	24567817	24567817	+	Silent	SNP	G	G	T	rs373177664	bycluster	TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PCK2	NM_004563	exon4	c.G594T	p.V198V	ACCTGTGCTTCAG		52	3	0.06	57	0	0		66		80	0	0.00			
TGM1	7051	mdanderson.org	37	14	24724426	24724426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	TGM1	NM_000359	exon12	c.C1679T	p.A560V	GCTGCTGCTGTCT		50	3	0.06	76	0	0		73		3	0	0.00			
ZFP36L1	677	mdanderson.org	37	14	69256669	69256669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	ZFP36L1,NS,carcinoma,+1,1	ZFP36L1	NM_001244701	exon3	c.C805A	p.H269N	AGCTATGCTGGAG		31	3	0.10	33	0	0		47	1	443	0	0.00			
.	317775	bcgsc.ca	37	14	90204733	90204733	+	RNA	SNP	G	G	C	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	.	.	.	.	.	AGCACCGGTTTGA		30	5	0.17	38	0	0				0	0				
FSIP1	161835	mdanderson.org	37	15	40034047	40034047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	FSIP1	NM_152597	exon6	c.C614A	p.P205H	TCTGGAGGGATTT		47	3	0.06	50	0	0		53		3	0	0.00			
ITGA11	22801	mdanderson.org	37	15	68628046	68628046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ITGA11	NM_001004439	exon12	c.C1414T	p.R472W	GGCCCCGCATAGC		62	3	0.05	91	0	0		110		22	0	0.00			
ARIH1	25820	broad.mit.edu	37	15	72767235	72767235	+	Silent	SNP	C	C	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ARIH1	NM_005744	exon1	c.C255T	p.G85G	CGGCGGCGGTGGT		61	6	0.10	74	1	0.0135135135		42		1	0	0.00			
PML	5371	mdanderson.org	37	15	74327860	74327860	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PML	NM_033239	exon8	c.G2058A	p.W686X	GACTTGGTCTCCC		34	4	0.12	36	0	0		169		117	1	0.01			
PIGQ	9091	mdanderson.org	37	16	626214	626214	+	Missense_Mutation	SNP	G	G	A	rs371210440		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PIGQ	NM_148920	exon4	c.G902A	p.R301H	GAAGCCGCATCGG		40	3	0.08	50	0	0		43		72	0	0.00			
NTHL1	4913	ucsc.edu;bcgsc.ca	37	16	2096364	2096364	+	Missense_Mutation	SNP	G	G	T	rs375615004	alternate_allele	TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	NTHL1	NM_002528	exon2	c.C143A	p.A48E	TTCCTCGCTTCTG		42	4	0.10	64	0	0		24		156	0	0.00			
CREBBP	1387	mdanderson.org	37	16	3778522	3778522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	CREBBP	NM_004380	exon31	c.C6526A	p.P2176T	GTCCTGGGTTCAT		47	3	0.06	65	0	0		546		222	0	0.00			
KIFC3	3801	mdanderson.org	37	16	57803627	57803627	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	KIFC3	NM_005550	exon9	c.C1098A	p.T366T	CAAGTTGGTCCGG		47	3	0.06	51	0	0		55		51	0	0.00			
TCF25	22980	broad.mit.edu	37	16	89940142	89940142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	TCF25	NM_014972	exon1	c.G67T	p.A23S	CCCGGCGCCTTGC		71	6	0.08	72	1	0.0138888889		61		150	2	0.01			
TMEM132E	124842	mdanderson.org	37	17	32964437	32964437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	TMEM132E	NM_207313	exon10	c.C2141T	p.T714M	TCGCCACGACCCC		48	3	0.06	65	0	0		122		0	0				
KRT26	353288	broad.mit.edu	37	17	38925171	38925171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	KRT26	NM_181539	exon6	c.G1147A	p.E383K	CAATTTCTTTTTC		95	15	0.16	111	8	0.0720720721		49		0	0				
BRCA1	672	hgsc.bcm.edu;bcgsc.ca	37	17	41234509	41234509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	BRCA1,NS,carcinoma,0,1	BRCA1	NM_007300	exon12	c.C4269A	p.S1423R	AGGCTGGCTCCCA		115	6	0.05	112	0	0		0	1	82	0	0.00			
.	0	broad.mit.edu	37	17	43601766	43601766	+	RNA	DEL	A	A	-	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	.	.	.	.	.	CAGGTCAAAAACC		7	2	0.29	8	0	0				3	0	0.00			
TLK2	11011	broad.mit.edu	37	17	60637441	60637441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	TLK2_ENST00000346027,NS,carcinoma,0,31	TLK2	NM_006852	exon10	c.G785A	p.R262Q	AGGAACGATTAAA		457	7	0.02	500	0	0		223	31	43	0	0.00			
SMCHD1	23347	mdanderson.org	37	18	2724961	2724961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	SMCHD1	NM_015295	exon21	c.G2668T	p.A890S	GTTACAGCCAAGG		67	4	0.06	87	0	0		88		26	0	0.00			
LRG1	116844	mdanderson.org	37	19	4538737	4538737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	LRG1	NM_052972	exon2	c.C259A	p.L87I	GGAGGAGGTTGGC		52	3	0.06	59	0	0		25		6	0	0.00			
KHSRP	8570	mdanderson.org	37	19	6417053	6417053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	KHSRP	NM_003685	exon12	c.C1127A	p.P376Q	CTGTCTGGGGGCC		36	3	0.08	51	0	0		51		1844	1	0.00			
KRI1	65095	mdanderson.org	37	19	10665783	10665783	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	KRI1	NM_023008	exon18	c.C1779G	p.F593L	TGACTTGAAGACC		57	3	0.05	93	0	0		65		181	0	0.00			
KANK2	25959	broad.mit.edu	37	19	11304551	11304551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	KANK2	NM_015493	exon2	c.C205A	p.R69S	TCAGGCGGGGGCG		109	4	0.04	130	0	0		47		59	0	0.00			
EPOR	2057	mdanderson.org	37	19	11492419	11492419	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	EPOR	NM_000121	exon4	c.C534A	p.I178I	GTAGCGGATGTGA		47	3	0.06	81	0	0		26		11	0	0.00			
F2RL3	9002	mdanderson.org	37	19	17000071	17000071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	F2RL3	NM_003950	exon1	c.G71T	p.S24I	CCCCCAGCGTCTA		42	3	0.07	56	0	0		20		2	0	0.00			
CILP2	148113	mdanderson.org	37	19	19655439	19655439	+	Silent	SNP	C	C	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	CILP2	NM_153221	exon8	c.C2085T	p.S695S	GGAGAGCGGCTTC		16	2	0.13	20	0	0		84		10	0	0.00			
ZNF492	57615	mdanderson.org	37	19	22836775	22836775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	ZNF492_ENST00000456783,NS,carcinoma,0,1	ZNF492	NM_020855	exon3	c.C88A	p.P30T	AAAGAACCTTGGA		59	3	0.05	85	0	0		129	1	28	0	0.00			
LTBP4	8425	broad.mit.edu;mdanderson.org	37	19	41113429	41113429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	LTBP4	.	.	.	.	CCCTTCGGCTCAG		59	3	0.05	66	0	0		101		42	0	0.00			
DACT3	147906	broad.mit.edu	37	19	47151865	47151865	+	Silent	SNP	A	A	C	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	DACT3	NM_145056	exon4	c.T1764G	p.G588G	TGCTCCACCCCCA		94	14	0.15	91	20	0.2197802198		26		10	1	0.10			
GLTSCR1	29998	mdanderson.org	37	19	48204805	48204805	+	Silent	SNP	C	C	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	GLTSCR1	NM_015711	exon15	c.C3816T	p.S1272S	CTCTTCCTCCTCC		26	2	0.08	43	0	0		79		57	0	0.00			
SPHK2	56848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49131956	49131956	+	Silent	SNP	C	C	A	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	.	NM_020126	exon7	c.C891A	p.G297G	CCTGGGCCTCGAC		22	7	0.32	31	0	0				22	6	0.27			
NR1H2	7376	mdanderson.org	37	19	50885775	50885775	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	NR1H2	NM_007121	exon10	c.G1299T	p.V433V	CTCTGTGCACTCG		54	3	0.06	52	0	0		47		248	0	0.00			
POLD1	5424	mdanderson.org	37	19	50918754	50918754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	POLD1	NM_002691	exon21	c.G2624A	p.R875H	GCAACCGCATCGA		129	5	0.04	177	0	0		174		402	0	0.00			
U2AF2	11338	mdanderson.org	37	19	56172490	56172490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	U2AF2	NM_001012478	exon5	c.G421T	p.G141W	GTGGTCGGGAGCC		36	3	0.08	60	0	0		62		1310	1	0.00			
PUM2	23369	mdanderson.org	37	2	20507802	20507802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	PUM2,NS,carcinoma,+1,1	PUM2	NM_015317	exon6	c.C820A	p.Q274K	ACTGTTGAACTGT		44	3	0.07	50	0	0		91	1	84	0	0.00			
EFR3B	22979	mdanderson.org	37	2	25364277	25364277	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	EFR3B	NM_014971	exon17	c.G1897T	p.E633X	CTCCCCGAGGATG		54	3	0.06	55	0	0		29		72	0	0.00			
.	0	bcgsc.ca	37	2	130987508	130987508	+	RNA	SNP	G	G	T	rs75869381	bycluster	TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	.	.	.	.	.	AGGAAAGTGCTGA		72	7	0.10	52	0	0				45	2	0.04			
NFE2L2	4780	broad.mit.edu	37	2	178096691	178096691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	NFE2L2	NM_006164	exon5	c.C640A	p.P214T	GACTTGGAACCAT		250	6	0.02	255	1	0.0039215686		225		170	0	0.00			
SPEG	10290	mdanderson.org	37	2	220342106	220342106	+	Silent	SNP	C	C	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	SPEG	NM_005876	exon20	c.C4668T	p.T1556T	CTACACCTGCACC		56	3	0.05	52	0	0		272		7	0	0.00			
WDFY1	57590	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	224809898	224809898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	.	NM_020830	exon1	c.A104G	p.K35R	TCCTCCTTGGGGA		32	7	0.22	32	0	0				109	28	0.26			
B3GNT7	93010	mdanderson.org	37	2	232263526	232263526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	B3GNT7	NM_145236	exon2	c.T1096C	p.F366L	CCGTGCTTTTTCC		13	2	0.15	24	0	0		38		294	1	0.00			
MRPS26	64949	mdanderson.org	37	20	3027059	3027059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	MRPS26	NM_030811	exon2	c.G253T	p.A85S	CACGAGGCCCGAG		28	3	0.11	33	0	0		7		610	1	0.00			
PXMP4	11264	mdanderson.org	37	20	32307918	32307918	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PXMP4	NM_183397	exon1	c.C96A	p.G32G	CCGGAAGCCCTTA		68	4	0.06	70	0	0		20		16	0	0.00			
MOCS3	27304	mdanderson.org	37	20	49576174	49576174	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	MOCS3	NM_014484	exon1	c.G795T	p.A265A	CGCTGCGGGTCTG		47	3	0.06	55	0	0		44		48	0	0.00			
KRTAP10-7	386675	mdanderson.org	37	21	46020867	46020867	+	Missense_Mutation	SNP	A	A	T	rs944419	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	KRTAP10-7	NM_198689	exon2	c.A331T	p.M111L	TGCTGCATGCCCG		70	3	0.04	87	0	0		41		0	0				
DIP2A	23181	mdanderson.org	37	21	47965817	47965817	+	Silent	SNP	A	A	G	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	DIP2A	NM_206890	exon20	c.A2337G	p.G779G	AGGAGGAGCACCC		46	3	0.07	56	0	0		332		38	0	0.00			
LINC00207	388910	mdanderson.org	37	22	44966385	44966385	+	RNA	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	LINC00207	.	.	.	.	GGTTCTGTTTAAA		55	3	0.05	77	0	0		8		0	0				
ULK4	54986	mdanderson.org	37	3	41705146	41705146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ULK4	NM_017886	exon30	c.C3023A	p.A1008D	TTCAGAGCATATG		55	3	0.05	76	0	0		150		10	0	0.00			
PTPN23	25930	mdanderson.org	37	3	47448239	47448239	+	Missense_Mutation	SNP	G	G	T	rs148327878	bycluster;alternate_allele	TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PTPN23	NM_015466	exon9	c.G806T	p.R269L	GGGAGCGGGTGAG		99	4	0.04	117	0	0		85		117	0	0.00			
PVRL3	25945	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	110831212	110831212	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PVRL3	NM_001243286	exon2	c.G496C	p.V166L	GTAACTGTGTTAG		227	34	0.15	213	2	0.0093896714		78		15	5	0.33			
FAM86HP	729375	hgsc.bcm.edu	37	3	129818153	129818153	+	RNA	SNP	A	A	C	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	.	.	.	.	.	GGAAACAGTTTCT		623	26	0.04	630	0	0				13	0	0.00			
NOP14	8602	mdanderson.org	37	4	2949327	2949327	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	NOP14	NM_003703	exon10	c.C1425A	p.G475G	AAGAAAGCCAAAC		45	3	0.07	57	0	0		69		140	1	0.01			
PCDH7	5099	mdanderson.org	37	4	30724751	30724751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PCDH7	NM_002589	exon1	c.G1707T	p.E569D	CGCCGAGATCGCC		55	3	0.05	80	0	0		215		2	0	0.00			
PDGFRA	5156	mdanderson.org	37	4	55153609	55153609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PDGFRA	NM_006206	exon19	c.G2575A	p.V859M	CTGCCCGTGAAGT		59	3	0.05	71	0	0		1583		53	0	0.00			
TSPAN5	10098	mdanderson.org	37	4	99579371	99579371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	TSPAN5	NM_005723	exon1	c.G7A	p.G3R	GCTTCCCGGACAT		51	3	0.06	85	0	0		32		28	0	0.00			
PCDHB10	56126	mdanderson.org	37	5	140573922	140573922	+	Silent	SNP	C	C	T	rs376773467	bycluster	TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	PCDHB10	NM_018930	exon1	c.C1797T	p.N599N	CCAGAACGCCTGG		25	2	0.08	13	0	0		177		0	0				
PCDHGA8	0	broad.mit.edu	37	5	140774176	140774176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	PCDHGA8,NS,carcinoma,0,4	PCDHGA8	NM_014004	exon1	c.G1796T	p.G599V	ACTCGGGCCAGAA		86	6	0.07	90	3	0.0333333333		146	4	2	0	0.00			
ZNF184	7738	mdanderson.org	37	6	27435652	27435652	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ZNF184	NM_007149	exon3	c.C55A	p.L19I	ATGAGAGTAGATT		49	3	0.06	58	0	0		89		13	0	0.00			
ZBTB9	221504	mdanderson.org	37	6	33423522	33423522	+	Silent	SNP	G	G	A	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ZBTB9	NM_152735	exon2	c.G645A	p.E215E	AGAAGAGGAGGAG		50	3	0.06	60	0	0		23		57	0	0.00			
DEF6	50619	broad.mit.edu	37	6	35287347	35287347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	DEF6	NM_022047	exon8	c.C1262A	p.A421D	AGGAGGCTGCCCG		159	7	0.04	182	6	0.032967033		36		34	2	0.06			
RIPPLY2	134701	mdanderson.org	37	6	84563870	84563870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	RIPPLY2	NM_001009994	exon3	c.C229A	p.H77N	TTCAGGCACCCAG		49	3	0.06	61	0	0		17		1	0	0.00			
LRP11	84918	mdanderson.org	37	6	150164182	150164182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	LRP11	NM_032832	exon3	c.G850A	p.A284T	GCCCGGCAGTGTC		55	3	0.05	89	0	0		27		44	0	0.00			
UNCX	340260	broad.mit.edu	37	7	1275520	1275520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	UNCX	NM_001080461	exon3	c.A503G	p.K168R	CGAAAAAGGGCCC		149	5	0.03	167	0	0		17		8	0	0.00			
ZAN	7455	broad.mit.edu	37	7	100349991	100349991	+	RNA	SNP	T	T	C	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	ZAN_ENST00000542585,NS,carcinoma,0,5	ZAN	.	.	.	.	ACCATCTCCCCAG		74	9	0.12	95	7	0.0736842105		658	5	0	0				
ZAN	7455	broad.mit.edu	37	7	100350655	100350655	+	RNA	SNP	T	T	C	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	ZAN	.	.	.	.	AAAAACTTACCAT		83	6	0.07	139	1	0.0071942446		658		3	0	0.00			
MFHAS1	9258	broad.mit.edu	37	8	8748487	8748487	+	Silent	SNP	A	A	C	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	MFHAS1	NM_004225	exon1	c.T2082G	p.G694G	GGTCAGACCCGCC		60	14	0.23	57	15	0.2631578947		58		62	6	0.10			
CPSF1	29894	mdanderson.org	37	8	145618734	145618734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	CPSF1	NM_013291	exon37	c.G4217A	p.R1406H	AGGTAGCGGTTGA		44	3	0.07	69	0	0		92		784	0	0.00			
NPR2	4882	mdanderson.org	37	9	35792487	35792487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	NPR2	NM_003995	exon1	c.G82T	p.A28S	ACGCTGGCGGTGG		42	3	0.07	22	0	0		162		6	0	0.00			
IPPK	64768	mdanderson.org	37	9	95400366	95400366	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	IPPK	NM_022755	exon9	c.C833A	p.A278E	GTGCCTGCCCGGC		42	3	0.07	50	0	0		34		57	0	0.00			
DCAF8L2	347442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	27765692	27765692	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-A8H1-01A-11D-A435-10	TCGA-XE-A8H1-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	308bc9ed-2d07-4805-8c9b-721b6dac164d	74fe1db1-9f3c-4457-804a-9432ce8156f5	.	.	NM_001136533	exon1	c.A680G	p.H227R	CAGACCATGTCGG		117	43	0.37	104	0	0				15	0	0.00			
