Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
TAS1R3	83756	mdanderson.org	37	1	1269365	1269365	+	Missense_Mutation	SNP	G	G	A	rs201157733	by1000genomes	TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_152228	exon6	c.G2080A	p.A694T	GAGGTCGCACTGT		17	2	0.12	18	0	0	0.001			3	0	0.00			
EIF2B3	8891	broad.mit.edu;mdanderson.org	37	1	45341312	45341312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	EIF2B3	NM_020365	exon9	c.C1031A	p.A344D	ATCTGGGCTGACG		91	5	0.05	89	0	0		43		262	1	0.00			
PKP1	5317	bcgsc.ca	37	1	201291157	201291157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	PKP1	NM_000299	exon9	c.G1462T	p.A488S	CTGGACGCCGAGG		56	4	0.07	88	1	0.0113636364		127		0	0				
.	343170	broad.mit.edu	37	1	247902370	247902370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	.	.	.	.	AGAGGGGCCTTGG		129	5	0.04	150	0	0				0	0				
SKIDA1	387640	broad.mit.edu	37	10	21805483	21805483	+	Silent	SNP	C	C	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_207371	exon4	c.G1269A	p.E423E	CTCTTCCTCCTCC		49	4	0.08	56	0	0				0	0				
RET	5979	mdanderson.org	37	10	43596103	43596103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_020975	exon2	c.G270T	p.E90D	CCAGGAGGACACC		45	3	0.07	51	0	0				23	0	0.00			
BMS1P4	0	broad.mit.edu	37	10	75476823	75476824	+	RNA	INS	-	-	A	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	.	.	.	.	GGGTAAGAAAAAA		5	1	0.20	6	0	0				7	0	0.00			
SORCS1	114815	mdanderson.org	37	10	108469042	108469042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001206572	exon7	c.C1082A	p.P361H	GGAAAAGGCTGAT		53	3	0.06	66	0	0				0	0				
MUC6	4588	bcgsc.ca	37	11	1017280	1017280	+	Missense_Mutation	SNP	G	G	T	rs199539548	bycluster	TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	MUC6	NM_005961	exon31	c.C5521A	p.P1841T	AAGATGGAACGTG		200	17	0.09	236	4	0.0169491525		408		0	0				
MUC2	4583	hgsc.bcm.edu	37	11	1092602	1092619	+	In_Frame_Del	DEL	CCACCACTCCCAGCCCTC	CCACCACTCCCAGCCCTC	-	rs201595190		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	CCACCACTCCCAGCCCTC	CCACCACTCCCAGCCCTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	MUC2	NM_002457	exon30	c.4420_4437del	p.1474_1479del	CTCCAACCACCAC		98	0	0.00	126	0	0		614		0	0				
LSP1	4046	mdanderson.org	37	11	1901421	1901421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001242932	exon3	c.G542A	p.G181D	GAGGCGGCCATGT		43	3	0.07	52	0	0				594	0	0.00			
TAF6L	10629	mdanderson.org	37	11	62545499	62545499	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_006473	exon4	c.G284T	p.R95M	CCGCCAGGGAGGG		43	3	0.07	74	0	0				15	0	0.00			
SNX32	254122	mdanderson.org	37	11	65620365	65620365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_152760	exon12	c.G1094A	p.R365H	AGTCCCGCCGGGT		52	3	0.06	92	0	0				0	0				
BRMS1	25855	mdanderson.org	37	11	66108711	66108711	+	Silent	SNP	C	C	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_015399	exon4	c.G324A	p.L108L	CCGCTGCAGCCCC		33	3	0.09	56	0	0				100	0	0.00			
PPP6R3	55291	mdanderson.org	37	11	68331885	68331885	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001164161	exon9	c.G960T	p.L320L	ACTCCTGCTGGAG		40	3	0.08	68	0	0				42	0	0.00			
C11orf54	28970	bcgsc.ca	37	11	93492996	93492996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	C11orf54	NM_014039	exon7	c.G596T	p.C199F	TGGTTTGTCTACC		45	4	0.09	65	0	0		23		17	0	0.00			
THY1	7070	mdanderson.org	37	11	119291054	119291054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	THY1,NS,carcinoma,+1,1	THY1	NM_006288	exon3	c.C80A	p.A27D	AGGCAGGCCGTTA		43	3	0.07	56	0	0		1	1	249	0	0.00			
WNK1	65125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	994308	994308	+	Silent	SNP	A	A	G	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001184985	exon19	c.A5118G	p.A1706A	TACAGCACTGTAT		188	46	0.24	130	0	0				99	31	0.31			
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	25378562	25378562	+	Missense_Mutation	SNP	C	C	T	rs121913527		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	KRAS_ENST00000256078,colon,carcinoma,+1,137	KRAS_ENST00000256078	NM_004985	exon4	c.G436A	p.A146T	TCTTTGCTGATGT		144	8	0.06	58	0	0		1	137	245	28	0.11			
SSPN	8082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	26383896	26383896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_005086	exon3	c.C619T	p.L207F	TGCGGCCTTGTGT		131	9	0.07	62	0	0				7	0	0.00			
ANKRD33	341405	mdanderson.org	37	12	52282494	52282494	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_182608	exon2	c.G288T	p.L96L	CAGGCTGGGGGCC		51	3	0.06	53	0	0				0	0				
APAF1	317	broad.mit.edu	37	12	99056499	99056499	+	Silent	SNP	A	A	G	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	APAF1	NM_181868	exon7	c.A870G	p.K290K	GGAAAAAGGACTT		190	4	0.02	202	1	0.004950495		111		6	0	0.00			
MYL2	4633	mdanderson.org	37	12	111348947	111348947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	MYL2,NS,carcinoma,0,1	MYL2	NM_000432	exon7	c.C435A	p.D145E	AGTCACGTCAGGG		48	3	0.06	65	0	0		0	1	0	0				
TUBA3C	7278	mdanderson.org	37	13	19751274	19751274	+	Silent	SNP	G	G	A	rs143115179	byfrequency	TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_006001	exon4	c.C849T	p.H283H	CTGCTCGTGGTAG		107	9	0.08	113	1	0.0088495575	0.008			19	0	0.00			
TUBA3C	7278	mdanderson.org	37	13	19751292	19751292	+	Silent	SNP	T	T	C	rs147482964	byfrequency	TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_006001	exon4	c.A831G	p.S277S	CTCGGCTGAGATG		115	11	0.10	109	1	0.0091743119	0.006			18	0	0.00			
TPTE2	93492	bcgsc.ca	37	13	20056686	20056686	+	Missense_Mutation	SNP	T	T	C	rs201542496		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	TPTE2	NM_199254	exon5	c.A121G	p.M41V	CTAACATACTTTA		387	15	0.04	507	1	0.0019723866		225		1	0	0.00			
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45618040	45618040	+	Missense_Mutation	SNP	G	G	T	rs141336758	bycluster;alternate_allele	TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	FANCM,NS,carcinoma,-1,1	FANCM	NM_020937	exon4	c.G760T	p.A254S	ATATAGGCTGTGC		71	10	0.14	74	0	0		-1	1	1	1	1.00			
ZBTB1	22890	mdanderson.org	37	14	64998614	64998614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_014950	exon3	c.G1934T	p.X645L	AGAAGTGAGAGAT		110	5	0.05	92	0	0				3	0	0.00			
TLN2	83660	mdanderson.org	37	15	62994394	62994394	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_015059	exon15	c.G1900T	p.G634X	ACTTCTGGAGAGG		43	3	0.07	50	0	0				17	0	0.00			
TMEM8A	58986	mdanderson.org	37	16	422283	422283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_021259	exon13	c.G2020A	p.A674T	GGTAAGCCTGGAG		20	2	0.10	25	0	0				98	0	0.00			
PIGQ	9091	mdanderson.org	37	16	626176	626176	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_148920	exon4	c.G864T	p.L288L	GGCCCTGGGCCTC		36	3	0.08	30	0	0				41	0	0.00			
FAM86A	196483	ucsc.edu	37	16	5140488	5140488	+	Missense_Mutation	SNP	C	C	T	rs200021489	byfrequency	TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	FAM86A	NM_201400	exon5	c.G421A	p.A141T	GGGCGGCGTCCCA		127	2	0.02	169	3	0.0177514793		32		69	17	0.25	rescued with RNA-seq		
KIAA0430	9665	mdanderson.org	37	16	15692880	15692880	+	Silent	SNP	C	C	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001184998	exon26	c.G4815A	p.G1605G	ACTGGGCCCTGGG		35	3	0.09	23	0	0				46	0	0.00			
BCL7C	9274	mdanderson.org	37	16	30904221	30904221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_004765	exon3	c.C220A	p.R74S	CCCGACGTTCCCG		27	3	0.11	42	0	0				171	0	0.00			
NRN1L	123904	ucsc.edu;bcgsc.ca	37	16	67918828	67918828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	NRN1L	NM_198443	exon1	c.C22T	p.R8C	CGCCGCCGCTGCT		22	4	0.18	22	0	0		13		29	0	0.00			
TMED6	146456	mdanderson.org	37	16	69377514	69377514	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_144676	exon4	c.C519A	p.I173I	GTGAAAGATATTG		85	5	0.06	86	0	0				6	0	0.00			
CDYL2	124359	mdanderson.org	37	16	80638332	80638332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_152342	exon7	c.C1474A	p.L492I	AGTCAAGGCCTTT		41	3	0.07	42	0	0				12	0	0.00			
BANP	54971	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	88068971	88068971	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001173542	exon10	c.G1243C	p.E415Q	CAGGGGGAGCAAG		118	11	0.09	125	0	0				43	5	0.12			
GUCY2D	3000	mdanderson.org	37	17	7915838	7915838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_000180	exon10	c.G2027T	p.G676V	TGGATGGCAGATT		30	3	0.10	52	0	0				1	0	0.00			
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		176	10	0.06	182	8	0.043956044				22	10	0.45			
SUPT6H	6830	broad.mit.edu	37	17	27010745	27010745	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	SUPT6H	NM_003170	exon17	c.G2140T	p.E714X	GCCATCGAACGGG		153	5	0.03	182	1	0.0054945055		165		70	0	0.00			
SUPT6H	6830	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	27015153	27015153	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	SUPT6H	NM_003170	exon24	c.G3051T	p.L1017L	CCAGCTGGTCACC		58	4	0.07	85	0	0		165		61	10	0.16			
MRPL45P2	0	broad.mit.edu	37	17	45567245	45567246	+	RNA	INS	-	-	A	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	.	.	.	.	CCATCTCAAAAAA		12	5	0.42	8	0	0				0	0				
PITPNC1	26207	mdanderson.org	37	17	65574359	65574359	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_012417	exon5	c.G352T	p.G118X	AACAAAGGAAGCA		32	3	0.09	43	0	0				226	0	0.00			
TBCD	6904	bcgsc.ca;mdanderson.org	37	17	80869665	80869665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	TBCD	NM_005993	exon23	c.G2038T	p.V680L	CAAGCAGGTAAGT		75	5	0.07	71	0	0		94		138	0	0.00			
HCN2	610	mdanderson.org	37	19	590563	590563	+	Silent	SNP	G	G	A	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001194	exon1	c.G618A	p.P206P	CCACCCGTACAGC		32	3	0.09	39	0	0				62	0	0.00			
LONP1	9361	broad.mit.edu;mdanderson.org	37	19	5693409	5693409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	LONP1	NM_004793	exon17	c.C2603T	p.T868I	CCCATGGCCAGGG		41	3	0.07	44	1	0.0227272727		66		427	0	0.00			
PNPLA6	10908	mdanderson.org	37	19	7619921	7619921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001166111	exon24	c.G2807T	p.C936F	TGCGCTGTCCGCG		15	3	0.20	10	0	0				65	0	0.00			
COL5A3	50509	mdanderson.org	37	19	10077257	10077257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_015719	exon63	c.C4624A	p.L1542I	ACACGAGGCCCGG		13	2	0.15	24	0	0				16	0	0.00			
COL5A3	50509	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	10096522	10096522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	COL5A3	NM_015719	exon31	c.C2402A	p.P801H	ACCTTAGGTCCAG		66	5	0.08	73	0	0		243		1	0	0.00			
CHERP	10523	ucsc.edu	37	19	16641681	16641681	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	CHERP	NM_006387	exon6	c.C685T	p.Q229X	GGGCCTGCTTGCG		38	4	0.11	23	0	0		70		170	0	0.00			
KIAA1683	80726	mdanderson.org	37	19	18368036	18368036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001145304	exon4	c.C4058A	p.A1353E	GGGTCTGCTGGTC		48	3	0.06	58	0	0				3	0	0.00			
TMEM161A	54929	mdanderson.org	37	19	19232386	19232386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_017814	exon8	c.G748A	p.A250T	TCTGGGCCAGCCG		41	3	0.07	52	0	0				51	0	0.00			
WDR62	284403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36582162	36582162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_173636	exon17	c.G2095A	p.V699M	ATCTCAGTGATTG		93	10	0.11	97	0	0				145	40	0.28			
DMWD	1762	mdanderson.org	37	19	46287528	46287528	+	Silent	SNP	G	G	A	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_004943	exon5	c.C1998T	p.G666G	GGAGTTGCCTGGT		24	3	0.13	30	0	0				48	0	0.00			
SIGLEC9	27180	mdanderson.org	37	19	51630549	51630549	+	Silent	SNP	G	G	A	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_014441	exon4	c.G1011A	p.L337L	CTCCCTGCAGAGT		47	3	0.06	38	0	0				31	0	0.00			
PPP2R1A	5518	mdanderson.org	37	19	52723049	52723049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	PPP2R1A,NS,carcinoma,-1,1	PPP2R1A	NM_014225	exon10	c.G1234T	p.A412S	GAGCTGGCTGAGG		42	4	0.10	38	0	0		-1	1	805	0	0.00			
ZNF525	170958	broad.mit.edu	37	19	53879043	53879043	+	Silent	SNP	T	T	C	rs62115350		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	ZNF525	.	.	.	.	CAGGGATGTGGCC		47	3	0.06	41	2	0.0487804878		35		8	0	0.00			
NLRP8	126205	mdanderson.org	37	19	56487528	56487528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_176811	exon8	c.G2735T	p.C912F	TTAATTGCTGTCA		82	5	0.06	73	0	0				0	0				
RNASEH1	246243	broad.mit.edu	37	2	3599780	3599780	+	Missense_Mutation	SNP	G	G	T	rs201104222	by1000genomes;alternate_allele	TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	RNASEH1	NM_002936	exon3	c.C363A	p.S121R	CTCCACGCTCGGC		95	3	0.03	79	0	0		27		158	0	0.00			
EPAS1	2034	broad.mit.edu;mdanderson.org	37	2	46605204	46605204	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	EPAS1	NM_001430	exon10	c.G1421C	p.S474T	CCACCAGCAGCAG		75	4	0.05	63	0	0		83		30	0	0.00			
STAT1	6772	mdanderson.org	37	2	191864377	191864377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_139266	exon7	c.C516A	p.F172L	GCATTTGAAGTCA		84	4	0.05	98	0	0				648	0	0.00			
ENTPD6	955	mdanderson.org	37	20	25187787	25187787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001247	exon3	c.G130A	p.A44T	AAGGTGGCATACC		42	3	0.07	79	1	0.0126582278				54	0	0.00			
ANKRD20A11P	0	broad.mit.edu	37	21	15343746	15343749	+	RNA	DEL	TCTG	TCTG	-	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	TCTG	TCTG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	.	.	.	.	GTGCTTTCTGATG		13	5	0.38	5	0	0				0	0				
GGT3P	0	broad.mit.edu	37	22	18770143	18770144	+	RNA	INS	-	-	T	rs112524868		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	.	.	.	.	TTAATTGTTTTTT		10	2	0.20	5	0	0				1	0	0.00			
GAS2L1	10634	mdanderson.org	37	22	29704567	29704567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_152237	exon2	c.G472T	p.V158L	CGCCTCGTGCAGT		24	3	0.13	22	0	0				101	0	0.00			
CHL1	10752	mdanderson.org	37	3	407688	407688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001253388	exon13	c.G1641T	p.M547I	GCATATGCTTGAA		44	3	0.07	67	0	0				0	0				
IL17RC	84818	mdanderson.org	37	3	9974650	9974650	+	Silent	SNP	C	C	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_153461	exon19	c.C1749T	p.G583G	CAGGGGCCGCGCG		32	3	0.09	28	0	0				25	0	0.00			
FEZF2	55079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	62355878	62355878	+	Silent	SNP	G	G	A	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_018008	exon5	c.C1260T	p.A420A	GCAAGTGGCGCAC		155	17	0.11	188	0	0				0	0				
NEK11	79858	mdanderson.org	37	3	130947422	130947422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_024800	exon15	c.G1450T	p.D484Y	GCATTTGATTCCT		51	3	0.06	56	0	0				7	0	0.00			
HPS3	84343	broad.mit.edu	37	3	148858028	148858028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	HPS3	NM_032383	exon2	c.G455A	p.C152Y	TTGGCTGCACAAA		159	5	0.03	174	0	0		104		8	0	0.00			
PKD2	5311	mdanderson.org	37	4	88964595	88964595	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_000297	exon5	c.G1305T	p.L435L	TAACCTGTTCTGT		42	3	0.07	65	0	0				14	0	0.00			
UBE2D3	7323	broad.mit.edu	37	4	103730964	103730964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	UBE2D3_ENST00000343106,right_upper_lobe,carcinoma,0,2	UBE2D3	NM_181893	exon2	c.C79A	p.P27T	CAACTGGACCTGC		256	4	0.02	301	0	0		25	2	475	0	0.00			
MGC45800	0	mdanderson.org	37	4	183064680	183064680	+	RNA	SNP	C	C	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	.	.	.	.	ACTCAGCTGACCT		116	5	0.04	161	0	0				1	0	0.00			
PLEKHG4B	153478	bcgsc.ca;mdanderson.org	37	5	174144	174144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	PLEKHG4B	NM_052909	exon16	c.G3265A	p.A1089T	AGCTCGGCAGAGG		96	5	0.05	101	0	0		167		1	0	0.00			
PCDHB10	56126	mdanderson.org	37	5	140573922	140573922	+	Silent	SNP	C	C	T	rs376773467	bycluster	TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_018930	exon1	c.C1797T	p.N599N	CCAGAACGCCTGG		15	2	0.13	20	0	0				1	0	0.00			
SIMC1	375484	broad.mit.edu	37	5	175717431	175717431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	.	.	.	.	CAAGATGTGGCAT		155	4	0.03	158	0	0				4	0	0.00			
FAM8A1	51439	hgsc.bcm.edu	37	6	17602826	17602826	+	Nonsense_Mutation	SNP	G	G	T	rs74444948	bycluster;byfrequency	TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	FAM8A1,NS,carcinoma,-1,2	FAM8A1	NM_016255	exon2	c.G718T	p.E240X	GGCAGAGAATATG		56	3	0.05	41	2	0.0487804878	0.008	-1	2	16	0	0.00			
EHMT2	10919	mdanderson.org	37	6	31860678	31860678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_025256	exon5	c.C592A	p.P198T	TCTCAGGGACCGG		45	3	0.07	76	0	0				29	0	0.00			
MEP1A	4224	mdanderson.org	37	6	46766384	46766384	+	Splice_Site	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_005588	exon4	c.186+1G>T	.	TTGCAGGTGAGTA		24	3	0.13	25	0	0				0	0				
WIPI2	26100	broad.mit.edu	37	7	5266833	5266833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	WIPI2	NM_015610	exon10	c.T871C	p.W291R	ACCACCTGGACCG		79	3	0.04	78	0	0		41		241	0	0.00			
BZW2	28969	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	16725542	16725542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	BZW2	NM_014038	exon6	c.C418T	p.L140F	CTCTTCCTTAAAG		55	21	0.38	49	3	0.0612244898		35		79	17	0.22			
ZAN	7455	broad.mit.edu	37	7	100349595	100349595	+	RNA	SNP	T	T	A	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	ZAN_ENST00000542585,NS,carcinoma,-1,2	ZAN	.	.	.	.	ATTCCCTCAGAAA		160	6	0.04	129	0	0		658	2	8	0	0.00			
.	0	broad.mit.edu	37	7	128210686	128210687	+	RNA	DEL	AT	AT	-	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	AT	AT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	.	.	.	.	ATGACCATCCTCC		5	2	0.40	8	0	0				3	0	0.00			
EZH2	2146	mdanderson.org	37	7	148529746	148529746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001203247	exon4	c.C343A	p.P115T	GTAGGGGAGACCA		45	3	0.07	28	0	0				54	0	0.00			
CHPF2	54480	broad.mit.edu	37	7	150935559	150935559	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	CHPF2	NM_019015	exon4	c.T2111G	p.V704G	TGGAGGTGATGGA		99	18	0.18	104	9	0.0865384615		52		47	2	0.04			
BHLHE22	27319	mdanderson.org	37	8	65494205	65494205	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_152414	exon1	c.G858T	p.L286L	CACGCTGCTGCTC		35	3	0.09	35	0	0				12	0	0.00			
FABP12	0	broad.mit.edu	37	8	82437068	82437069	+	RNA	INS	-	-	TAT	rs10627097	bycluster;by1000genomes	TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	FABP12	.	.	.	.	CTGAAAATATCCC		7	5	0.71	6	0	0		20		0	0				
PLEC	5339	mdanderson.org	37	8	144993686	144993686	+	Missense_Mutation	SNP	C	C	T	rs375044211		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	PLEC_ENST00000436759,right_upper_lobe,carcinoma,0,3	PLEC_ENST00000436759	NM_201380	exon32	c.G10714A	p.G3572S	TGTAGCCGGTGAC		27	3	0.11	15	0	0		0	3	197	0	0.00			
MPDZ	8777	mdanderson.org	37	9	13115250	13115250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001261406	exon39	c.C5364A	p.S1788R	CACCTGGCTGCTT		28	3	0.11	43	0	0				28	0	0.00			
GNAQ	2776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	80430592	80430592	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_002072	exon3	c.C416G	p.P139R	ATTCCAGGATCAT		83	34	0.41	109	0	0				45	31	0.69			
ROR2	4920	mdanderson.org	37	9	94486405	94486405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_004560	exon9	c.C2371A	p.Q791K	CCTTCTGCTTGGG		34	3	0.09	34	0	0				29	0	0.00			
RNR1	6052	hgsc.bcm.edu	37	MT	810	810	+	RNA	SNP	G	G	A	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	.	.	.	.	CCCACGGGAAACA		210	23	0.11	548	0	0				0	0				
WNK3	65267	mdanderson.org	37	X	54320996	54320996	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	NM_001002838	exon8	c.C1683A	p.S561S	AACAGAGGAGCAG		40	3	0.08	36	0	0				7	0	0.00			
.	0	bcgsc.ca	37	X	89295592	89295592	+	RNA	SNP	G	G	T	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	.	.	.	.	.	ATGTCTGCTCACC		38	4	0.11	36	0	0				2	0	0.00			
PAK3	5063	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	110385387	110385387	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XE-A8H4-01A-31D-A435-10	TCGA-XE-A8H4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2cc915-3956-4c23-9ebc-a6e10b61529e	6423e32a-2e67-4707-a9ad-80324f8a4cc1	.	PAK3	NM_001128166	exon4	c.T239G	p.I80S	ATACGATTCATGT		72	5	0.07	79	0	0		179		1	0	0.00			
