Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
TAS1R1	80835	mdanderson.org	37	1	6615594	6615594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_177540	exon1	c.G161T	p.R54M	AGGTGAGGCACAG		32	3	0.09	41	0	0				1	0	0.00			
FBXO2	26232	mdanderson.org	37	1	11710791	11710791	+	Silent	SNP	C	C	G	rs61749273	bycluster	TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_012168	exon2	c.G123C	p.A41A	GGCGGCCGCCGCC		9	2	0.22	17	0	0				17	5	0.29			
TMEM51-AS1	200197	hgsc.bcm.edu	37	1	15439098	15439098	+	RNA	SNP	C	C	T	rs114844404	bycluster	TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	.	.	.	.	TTTTCTCCTCCCG		107	19	0.18	85	0	0				10	0	0.00			
MYOM3	127294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24406587	24406587	+	Silent	SNP	G	G	A	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_152372	exon20	c.C2505T	p.G835G	GTGATAGCCTGTG		105	26	0.25	150	0	0				0	0				
SLC9A1	6548	broad.mit.edu	37	1	27436115	27436115	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	SLC9A1	NM_003047	exon3	c.A967C	p.T323P	GGGAGGTAAATCG		103	23	0.22	79	13	0.164556962		68		82	5	0.06			
COL24A1	255631	mdanderson.org	37	1	86246917	86246917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_152890	exon52	c.C4324A	p.P1442T	CTGTTGGGCCTAT		40	3	0.08	24	0	0				2	0	0.00			
RORC	6097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151783858	151783858	+	Silent	SNP	C	C	A	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	RORC,NS,neuroblastoma,-2,1	RORC	NM_005060	exon10	c.G1338T	p.L446L	CAGCTCCAGATTG		108	20	0.19	112	0	0		-2	1	1	0	0.00			
RFWD2	64326	broad.mit.edu	37	1	176105674	176105674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	RFWD2	NM_022457	exon7	c.C841A	p.Q281K	GGATCTGTTCCAG		215	15	0.07	150	1	0.0066666667		67		112	0	0.00			
DIP2C	22982	mdanderson.org	37	10	395386	395386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_014974	exon25	c.A2994G	p.I998M	GTTCGCTATCGCA		49	4	0.08	42	0	0				24	0	0.00			
ATOH7	220202	mdanderson.org	37	10	69991089	69991089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	ATOH7,NS,carcinoma,+2,1	ATOH7	NM_145178	exon1	c.T346C	p.F116L	GGCCGAAGTGCTC		48	3	0.06	28	0	0		2	1	3	0	0.00			
NEUROG3	50674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	71332771	71332771	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_020999	exon2	c.C29G	p.T10S	TGGACAGTGGGCG		31	7	0.23	46	0	0				0	0				
C10orf76	79591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103766354	103766354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_024541	exon14	c.A991G	p.S331G	CAGGACTGACAGG		70	15	0.21	66	0	0				82	33	0.40			
FANK1	92565	mdanderson.org	37	10	127585221	127585221	+	Nonsense_Mutation	SNP	C	C	T	rs202109621		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_145235	exon1	c.C10T	p.Q4X	GAGCCCCAGAGTA		17	2	0.12	17	0	0				31	0	0.00			
ANO9	338440	mdanderson.org	37	11	431763	431763	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	ANO9,bladder,carcinoma,0,1	ANO9	NM_001012302	exon7	c.A470G	p.E157G	CGTCCCTCCCCCT		42	3	0.07	67	0	0		0	1	3	0	0.00			
PIDD	55367	ucsc.edu;bcgsc.ca	37	11	802246	802246	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	PIDD	NM_145887	exon6	c.C1125A	p.A375A	GAGCAGGGCGTCA		43	4	0.09	62	0	0		76		34	0	0.00			
MUC6	4588	bcgsc.ca	37	11	1017092	1017092	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	MUC6	NM_005961	exon31	c.C5709G	p.S1903R	GGATTGGCTGGTC		133	12	0.09	246	8	0.0325203252		408		1	0	0.00			
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1271284	1271284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_002458	exon31	c.C13174T	p.L4392F	TGGATCCTCACAG		109	33	0.30	196	0	0				0	0				
ZNF195	7748	mdanderson.org	37	11	3383000	3383000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001242841	exon5	c.C358A	p.L120I	CATTGAGGCCTGG		34	3	0.09	63	0	0				23	0	0.00			
RRP8	23378	mdanderson.org	37	11	6623111	6623111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_015324	exon2	c.C434T	p.A145V	TGCTGGGCTGAAT		52	3	0.06	112	0	0				86	0	0.00			
DCHS1	8642	mdanderson.org	37	11	6644407	6644407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_003737	exon21	c.C8500A	p.H2834N	GCACGTGACCCAA		52	4	0.08	43	0	0				96	0	0.00			
RCN1	5954	mdanderson.org	37	11	32119923	32119923	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_002901	exon3	c.C476A	p.S159X	ATTCTTCAGATCA		45	3	0.07	91	0	0				116	0	0.00			
SLC15A3	51296	mdanderson.org	37	11	60718930	60718930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_016582	exon1	c.C94T	p.R32W	CCGCCCGCCGCCA		25	3	0.12	20	0	0				2	0	0.00			
SIPA1	6494	mdanderson.org	37	11	65408903	65408903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_006747	exon2	c.G511T	p.G171C	CTCGGGGGTGAGG		21	2	0.10	44	0	0				29	0	0.00			
CPT1A	1374	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	68527806	68527806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001876	exon17	c.G2029A	p.V677I	ATAAAACCTATTG		95	9	0.09	182	0	0				90	3	0.03			
IL18BP	10068	mdanderson.org	37	11	71711470	71711470	+	Silent	SNP	G	G	A	rs202132601	bycluster;by1000genomes	TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001039660	exon3	c.G102A	p.S34S	TGTCTCGCAGACC		37	3	0.08	64	0	0	0.001			156	0	0.00			
INTS4	92105	broad.mit.edu	37	11	77635932	77635932	+	Missense_Mutation	SNP	A	A	C	rs148749715		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	INTS4	NM_033547	exon12	c.T1378G	p.S460A	CTCTGGATGAATC		202	3	0.01	285	2	0.0070175439		89		66	0	0.00			
TTC12	54970	mdanderson.org	37	11	113233143	113233143	+	Silent	SNP	C	C	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_017868	exon19	c.C1635T	p.S545S	TCTGAGCCGGACC		41	3	0.07	49	0	0				28	0	0.00			
C2CD2L	9854	broad.mit.edu	37	11	118984835	118984835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	C2CD2L	NM_014807	exon13	c.G1672A	p.A558T	TATGCGGCATCCC		45	3	0.07	60	0	0		39		18	0	0.00			
PRDM10	56980	mdanderson.org	37	11	129785738	129785738	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_020228	exon17	c.C2355A	p.S785R	GCGCTTGCTGGCA		39	3	0.08	71	0	0				17	0	0.00			
WNK1	65125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	968427	968427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001184985	exon6	c.C1417T	p.L473F	AAAGACCTTTTGA		556	44	0.08	217	0	0				282	18	0.06			
RHNO1	83695	broad.mit.edu	37	12	2997087	2997087	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001257098	exon3	c.A179T	p.D60V	CACCTGATTTTGA		254	27	0.11	99	8	0.0808080808				487	1	0.00			
WBP11	51729	broad.mit.edu	37	12	14941901	14941901	+	Silent	SNP	A	A	G	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	WBP11	NM_016312	exon11	c.T1476C	p.P492P	AGGGGGAGGTAGC		279	6	0.02	113	2	0.017699115		66		1037	9	0.01			
WBP11	51729	broad.mit.edu	37	12	14941934	14941934	+	Silent	SNP	A	A	G	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	WBP11	NM_016312	exon11	c.T1443C	p.G481G	AGGGGGACCAGGA		246	4	0.02	93	0	0		66		1043	10	0.01			
.	0	broad.mit.edu	37	12	20096041	20096042	+	RNA	INS	-	-	A	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	.	.	.	.	AGCTGTTAAAAAA		87	8	0.09	32	0	0				0	0				
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	C	G	rs121913530	bycluster	TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	KRAS_ENST00000256078,NS,adenocarcinoma,+1,25136	KRAS_ENST00000256078	NM_004985	exon2	c.G34C	p.G12R	CGCCACCAGCTCC		660	34	0.05	179	0	0		1	25136	214	26	0.12			
.	283463	bcgsc.ca;mdanderson.org	37	12	40805858	40805858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	.	.	.	.	AGTTCATCCTCTG		41	6	0.15	52	0	0				0	0				
ATF7	11016	mdanderson.org	37	12	53927032	53927032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_006856	exon7	c.G572A	p.G191D	AGGGAGCCAGTGG		105	5	0.05	83	0	0				30	0	0.00			
MTIF3	219402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28014201	28014201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001166263	exon4	c.C385A	p.Q129K	TGAGCTGATACTC		110	46	0.42	120	0	0				131	53	0.40			
FRY	10129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	32721459	32721459	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_023037	exon12	c.T1220G	p.L407R	AATCTCTCTACAG		84	30	0.36	115	0	0				1	0	0.00			
PPP1R13B	23368	mdanderson.org	37	14	104206527	104206527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_015316	exon12	c.C2226A	p.F742L	CTGGTAGAAAGGG		41	3	0.07	40	0	0				29	0	0.00			
AHNAK2	113146	mdanderson.org	37	14	105406054	105406054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_138420	exon7	c.C15734A	p.A5245D	GACATAGCTGCCT		39	3	0.08	85	0	0				2	0	0.00			
HERC1	8925	ucsc.edu	37	15	64039940	64039940	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	HERC1	NM_003922	exon11	c.C2337A	p.L779L	GAAAGGGAGTGGG		44	4	0.09	53	0	0		624		10	0	0.00			
PLEKHO2	80301	mdanderson.org	37	15	65153711	65153711	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_025201	exon5	c.G420T	p.V140V	GCATGTGACACGG		45	3	0.07	52	0	0				60	0	0.00			
CELF6	60677	mdanderson.org	37	15	72608195	72608195	+	Silent	SNP	G	G	A	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001172684	exon2	c.C336T	p.T112T	TGGCAGGGTCTTC		30	3	0.10	42	0	0				16	0	0.00			
HAPLN3	145864	mdanderson.org	37	15	89421275	89421275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_178232	exon5	c.C1009A	p.P337T	CCCCAGGCTCTGG		43	3	0.07	48	0	0				33	0	0.00			
ROGDI	79641	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	4848606	4848606	+	Silent	SNP	G	G	A	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	ROGDI	NM_024589	exon7	c.C495T	p.T165T	GGTGAGGGTGGCG		20	7	0.35	23	0	0		11		119	31	0.26			
DNAH3	55567	broad.mit.edu	37	16	20976354	20976354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	DNAH3_ENST00000261383,bladder,carcinoma,0,4	DNAH3	NM_017539	exon53	c.A8852G	p.K2951R	AAGTCCTTTTTCT		82	3	0.04	136	0	0		1142	4	5	0	0.00			
USP10	9100	hgsc.bcm.edu	37	16	84797756	84797756	+	Silent	SNP	T	T	C	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001272075	exon11	c.T1731C	p.G577G	ACAAGGTGAAGGA		100	5	0.05	125	0	0				277	0	0.00			
MAPT	4137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	44060770	44060770	+	Silent	SNP	G	G	A	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001123066	exon6	c.G600A	p.G200G	GGAGGGGCCGCCG		65	21	0.32	72	0	0				0	0				
PTBP1	5725	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	806515	806515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_002819	exon10	c.G1078A	p.A360T	GCGGGGGCAGGAA		180	29	0.16	168	0	0				776	189	0.24			
FBN3	84467	broad.mit.edu	37	19	8159377	8159377	+	Missense_Mutation	SNP	C	C	T	rs137977437		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	FBN3	NM_032447	exon46	c.G5858A	p.R1953H	ATGCAGCGGAAGG		67	16	0.24	74	2	0.027027027		300		120	30	0.25			
ANKLE1	126549	broad.mit.edu	37	19	17397490	17397501	+	In_Frame_Del	DEL	TGTGTGTGTGTT	TGTGTGTGTGTT	-	rs35771129	alternate_allele	TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	TGTGTGTGTGTT	TGTGTGTGTGTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	ANKLE1	.	.	.	.	TGTGTGTGTGTGT		20	8	0.40	17	0	0		27		6	0	0.00			
GATAD2A	54815	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19611944	19611944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	GATAD2A	NM_017660	exon9	c.G1219A	p.A407T	TCGGCCGCCACTG		95	18	0.19	101	1	0.0099009901		81		570	144	0.25			
ZNF432	9668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52550107	52550107	+	Silent	SNP	C	C	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_014650	exon2	c.G15A	p.Q5Q	AGTCACCTGGGCA		150	28	0.19	106	0	0				49	4	0.08			
ALK	238	mdanderson.org	37	2	29462644	29462644	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	ALK,right_lower_lobe,carcinoma,+1,1	ALK	NM_004304	exon13	c.C2257A	p.R753R	GGGACCGCATCAT		54	3	0.06	54	0	0		1	1	1	0	0.00			
TEKT4	150483	ucsc.edu	37	2	95542476	95542476	+	Missense_Mutation	SNP	C	C	T	rs1052809	bycluster;byfrequency	TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	TEKT4,NS,carcinoma,0,1	TEKT4	NM_144705	exon6	c.C1270T	p.R424C	CGTACTCGCTACC		27	5	0.19	16	0	0		72	1	2	2	1.00			
FAHD2CP	0	broad.mit.edu	37	2	96679935	96679937	+	RNA	DEL	AAC	AAC	-	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	AAC	AAC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	.	.	.	.	GTGATTAACAATT		8	3	0.38	4	0	0				1	0	0.00			
FAM178B	51252	mdanderson.org	37	2	97543710	97543710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001122646	exon16	c.G1924A	p.A642T	GCATGGCCTGGGG		45	3	0.07	44	0	0				18	0	0.00			
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141459406	141459406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	LRP1B,colon,carcinoma,+1,2	LRP1B	NM_018557	exon40	c.C6311T	p.A2104V	CCGTTTGCATGTG		199	46	0.23	204	0	0		1	2	1	0	0.00			
TTN	7273	bcgsc.ca;mdanderson.org	37	2	179605648	179605648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	TTN_ENST00000359218,NS,carcinoma,-1,3	TTN	NM_001267550	exon48	c.C12312A	p.S4104R	CTGACTGCTCAAT		70	5	0.07	91	0	0		18412	3	0	0				
UNC80	285175	mdanderson.org	37	2	210707111	210707111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_032504	exon21	c.G3401T	p.G1134V	AAGGTGGGCCAGG		50	3	0.06	44	0	0				0	0				
XRCC5	7520	broad.mit.edu	37	2	217012963	217012963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	XRCC5	NM_021141	exon14	c.A1634G	p.K545R	AGAAAAAGGATCA		287	4	0.01	270	0	0		64		3275	1	0.00			
PER2	8864	mdanderson.org	37	2	239171600	239171600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_022817	exon10	c.C1146A	p.H382Q	CTTTTTGTGGATG		50	3	0.06	58	0	0				10	0	0.00			
SRMS	6725	mdanderson.org	37	20	62172595	62172595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_080823	exon7	c.T1234C	p.F412L	CGCCGAAGGACCA		48	3	0.06	51	0	0				1	0	0.00			
LDOC1L	84247	broad.mit.edu;ucsc.edu;mdanderson.org	37	22	44893010	44893010	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	LDOC1L	NM_032287	exon2	c.C427T	p.R143X	TCAGTCGAGACAC		75	16	0.21	72	0	0		24		20	3	0.15			
ITPR1	3708	mdanderson.org	37	3	4730230	4730230	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001099952	exon31	c.C3727T	p.Q1243X	TTTTTGCAGAATT		50	3	0.06	65	0	0				2	0	0.00			
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	4810414	4810414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001168272	exon45	c.A5900G	p.Q1967R	TCCTTCAGCTCCT		189	43	0.23	267	0	0				15	2	0.13			
ZNF717	100131827	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	75786560	75786560	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	ZNF717	NM_001128223	exon5	c.A2214C	p.K738N	ACAAGGTTTTTCC		71	21	0.30	66	0	0		160		14	4	0.29			
C3orf36	80111	mdanderson.org	37	3	133647172	133647172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_025041	exon1	c.G476A	p.G159D	GCTCTGCCTTGAG		40	3	0.08	50	0	0				0	0				
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	bycluster	TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	PIK3CA_ENST00000263967,NS,carcinoma,0,1370	PIK3CA_ENST00000263967	NM_006218	exon10	c.G1633A	p.E545K	ATCACTGAGCAGG		315	81	0.26	348	0	0		0	1370	38	13	0.34			
HOPX	84525	mdanderson.org	37	4	57522142	57522142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001145460	exon3	c.C79A	p.P27T	CTGTGGGGCCGCT		42	3	0.07	26	0	0				9	0	0.00			
COX18	285521	broad.mit.edu;mdanderson.org	37	4	73935349	73935349	+	Silent	SNP	G	G	A	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	COX18	NM_173827	exon1	c.C18T	p.G6G	CCGACCGCCGAGC		14	4	0.29	15	0	0		20		20	5	0.25			
SDHA	6389	hgsc.bcm.edu	37	5	256508	256508	+	Silent	SNP	C	C	T	rs3211499		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	SDHA,NS,carcinoma,+2,1	SDHA	NM_004168	exon15	c.C1968T	p.T656T	TGCCACCGTCCCG		104	6	0.06	161	1	0.0062111801		2	1	193	2	0.01			
CTNND2	1501	mdanderson.org	37	5	11098816	11098816	+	Silent	SNP	T	T	C	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001332	exon15	c.A2508G	p.K836K	GATCCCTTTTGGT		52	3	0.06	86	0	0				5	0	0.00			
PDZD2	23037	mdanderson.org	37	5	32089541	32089541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_178140	exon19	c.G5987T	p.G1996V	AGCAAGGCATGTG		31	3	0.10	55	0	0				3	0	0.00			
DND1	373863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140052912	140052912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_194249	exon2	c.C86A	p.T29K	ATGCCTGTCTCCC		46	18	0.39	82	0	0				317	131	0.41			
TCOF1	6949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149776279	149776279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001135243	exon24	c.G4216T	p.G1406W	GGGAAGGGGTCTC		61	15	0.25	131	0	0				343	168	0.49			
DDX41	51428	mdanderson.org	37	5	176938912	176938912	+	Silent	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_016222	exon17	c.C1749A	p.A583A	GCAGAAGGCACAG		23	2	0.09	50	0	0				281	0	0.00			
DEK	7913	bcgsc.ca	37	6	18264096	18264096	+	Missense_Mutation	SNP	C	C	G	rs147127829	bycluster;byfrequency;by1000genomes	TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	DEK	NM_003472	exon2	c.G123C	p.E41D	CTCCTCCTCGTCG		107	6	0.06	129	2	0.015503876		31		141	2	0.01			
HIST1H3C	8352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26045834	26045834	+	Silent	SNP	C	C	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_003531	exon1	c.C196T	p.L66L	CGGAAGCTGCCGT		100	27	0.27	118	0	0				135	37	0.27			
LINC00336	401253	mdanderson.org	37	6	33555397	33555397	+	RNA	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	.	.	.	.	TTACCCGTGAAAG		49	3	0.06	65	0	0				0	0				
PI16	221476	mdanderson.org	37	6	36926939	36926939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_153370	exon2	c.G190A	p.A64T	GAGCTGGCCGCCT		36	3	0.08	63	0	0				5	0	0.00			
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	75904580	75904580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_004370	exon3	c.G157T	p.V53L	AACCCACAATTGG		114	27	0.24	92	0	0				0	0				
FRMD1	79981	mdanderson.org	37	6	168479734	168479734	+	Missense_Mutation	SNP	C	C	T	rs148792644	bycluster;by1000genomes	TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_024919	exon1	c.G41A	p.R14Q	TTTGTCCGGGCGG		45	3	0.07	56	0	0	0			0	0				
PPP1R17	10842	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	31735181	31735181	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_006658	exon3	c.A181T	p.K61X	GACCAAAAAAAAC		228	18	0.08	143	0	0				0	0				
UPK3BL	100134938	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	102279619	102279619	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	UPK3BL,NS,carcinoma,-2,4	UPK3BL	NM_001114403	exon4	c.A513C	p.E171D	GGGTCCTTCGTCA		554	30	0.05	613	0	0		-2	4	162	7	0.04			
CPED1	79974	broad.mit.edu;bcgsc.ca	37	7	120782123	120782149	+	In_Frame_Del	DEL	ACTCACCATCTATAGAGAAGACCGCCC	ACTCACCATCTATAGAGAAGACCGCCC	-	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	ACTCACCATCTATAGAGAAGACCGCCC	ACTCACCATCTATAGAGAAGACCGCCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001105533	exon15	c.1983_2009del	p.661_670del	GTACAAACTCACC		118	8	0.07	116	0	0				1	0	0.00			
C7orf29	113763	mdanderson.org	37	7	150027939	150027939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_138434	exon1	c.A446G	p.E149G	AGGGGGAGCCTCT		23	2	0.09	46	1	0.0217391304				11	0	0.00			
AGAP3	116988	mdanderson.org	37	7	150813895	150813895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_031946	exon2	c.G347T	p.S116I	TGAACAGCCAGGA		45	3	0.07	74	0	0				20	0	0.00			
SNTG1	54212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	51503445	51503445	+	Missense_Mutation	SNP	A	A	G	rs370352160	alternate_allele	TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_018967	exon13	c.A817G	p.K273E	ATTAAAAAAATCA		844	129	0.15	662	1	0.001510574				0	0				
TATDN1	83940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	125520903	125520903	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_032026	exon7	c.C416G	p.S139X	TGTTCTGACAGTT		259	46	0.18	177	0	0				248	14	0.06			
KCNK9	51305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	140630919	140630919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_016601	exon2	c.G707A	p.G236E	AAGGCCCCGATGA		104	14	0.13	85	0	0				0	0				
ADAMTSL1	92949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	18775867	18775867	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001040272	exon18	c.A2524T	p.R842W	TCCATCAGGCCCT		62	13	0.21	83	0	0				0	0				
TMOD1	7111	broad.mit.edu	37	9	100361953	100361953	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	TMOD1	NM_001166116	exon10	c.C1053G	p.I351M	GCCCATCATTCCC		142	3	0.02	114	0	0		29		70	1	0.01			
BAAT	570	broad.mit.edu	37	9	104133369	104133369	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	BAAT	NM_001127610	exon2	c.A318T	p.K106N	ATAAAGTTTTACT		195	6	0.03	176	0	0		52		0	0				
FUBP3	8939	mdanderson.org	37	9	133510064	133510064	+	Silent	SNP	C	C	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_003934	exon17	c.C1521T	p.S507S	GCAGAGCCAGCCG		44	3	0.07	39	0	0				212	0	0.00			
NOTCH1	4851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139396539	139396539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_017617	exon29	c.C5386A	p.P1796T	TCAGGGGCCTGGG		47	29	0.62	46	0	0				18	7	0.39			
RPGR	6103	mdanderson.org	37	X	38186593	38186593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001034853	exon1	c.G28A	p.D10N	ACTCACCGGGCAT		23	2	0.09	18	0	0				36	1	0.03			
IQSEC2	23096	broad.mit.edu	37	X	53263992	53263992	+	Silent	SNP	T	T	G	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	IQSEC2	NM_001111125	exon15	c.A3876C	p.P1292P	GGGAGGTGGGGGA		19	6	0.32	24	2	0.0833333333		195		47	0	0.00			
AWAT2	158835	broad.mit.edu	37	X	69263370	69263370	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	AWAT2	NM_001002254	exon4	c.T430C	p.F144L	AGAAAAAGGCTCC		132	3	0.02	122	0	0		36		5	0	0.00			
GPRASP1	9737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101909826	101909826	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001099411	exon3	c.A985T	p.N329Y	GCCAATAACAGGG		35	15	0.43	31	0	0				3	2	0.67			
GPRASP1	9737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101909834	101909834	+	Silent	SNP	C	C	A	novel		TCGA-XE-A8H5-01A-11D-A435-10	TCGA-XE-A8H5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	665a50ed-6767-411a-b99d-7e994cbe5e17	0ff8a73f-f639-4798-82f0-852d9c183b9d	.	.	NM_001099411	exon3	c.C993A	p.A331A	CAGGGCCAGGCAC		31	14	0.45	32	0	0				5	2	0.40			
