Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
LDLRAP1	26119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	25880446	25880446	+	Missense_Mutation	SNP	C	C	T	rs142920998	alternate_allele	TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_015627	exon2	c.C122T	p.T41M	GGGAGACGCTGCT		76	21	0.28	56	0	0				44	12	0.27			
DOCK7	85440	broad.mit.edu;mdanderson.org	37	1	63021531	63021531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	DOCK7,caecum,carcinoma,0,2	DOCK7	NM_001271999	exon21	c.G2561A	p.R854H	GGTAGGCGGAAAA		34	3	0.09	46	0	0		184	2	23	7	0.30			
KCND3	3752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	112524653	112524653	+	Silent	SNP	C	C	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	KCND3_ENST00000315987,NS,carcinoma,0,2	KCND3_ENST00000315987	NM_004980	exon2	c.G696A	p.A232A	GACGCACGCCGTG		54	13	0.24	65	0	0		0	2	0	0				
OR13A1	79290	mdanderson.org	37	10	45799527	45799527	+	Missense_Mutation	SNP	C	C	T	rs115582445	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_001004297	exon4	c.G344A	p.C115Y	GCCATGCAGCCCC		48	3	0.06	94	0	0				0	0				
TET1	80312	hgsc.bcm.edu;mdanderson.org	37	10	70333543	70333543	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_030625	exon2	c.C1448G	p.S483X	CAAACTCAGAGAA		84	7	0.08	99	0	0				12	3	0.25			
PHLDA2	7262	broad.mit.edu	37	11	2950513	2950513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	PHLDA2,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	PHLDA2	NM_003311	exon1	c.C82A	p.R28S	CCCCGCGCTTCTT		54	4	0.07	82	1	0.012195122		10	1	8	0	0.00			
ZNF215	7762	mdanderson.org	37	11	6953825	6953825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_013250	exon3	c.G322T	p.V108L	ACTTGGGTGAATT		49	3	0.06	69	0	0				7	0	0.00			
SCUBE2	57758	mdanderson.org	37	11	9082017	9082017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_001170690	exon8	c.C905A	p.T302K	ACACCTGTCGAAG		50	3	0.06	59	0	0				0	0				
LDHAL6A	160287	mdanderson.org	37	11	18500372	18500372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_144972	exon7	c.G954T	p.K318N	GCAAAAGAGTGCA		19	3	0.16	38	0	0				0	0				
BDNF-AS	497258	hgsc.bcm.edu	37	11	27681201	27681201	+	RNA	SNP	C	C	T	rs182322619		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	.	.	.	.	TGCGCGCGCGCGT		62	9	0.15	115	0	0				1	0	0.00			
TMEM132A	54972	mdanderson.org	37	11	60698068	60698068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_017870	exon5	c.G953T	p.G318V	TCAAGGGCTCCAG		37	3	0.08	39	0	0				122	0	0.00			
TAS2R20	259295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	11150095	11150096	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	CT	CT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	TAS2R20	NM_176889	exon1	c.380_381del	p.127_127del	ACTACACTCTTAG		214	30	0.14	119	0	0		17		1	0	0.00			
PRB4	5545	broad.mit.edu	37	12	11461592	11461592	+	Missense_Mutation	SNP	G	G	T	rs199532199	bycluster;alternate_allele	TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	PRB4	NM_001261399	exon3	c.C325A	p.Q109K	GGGACTGGTTTCC		263	10	0.04	151	2	0.0132450331		59		0	0				
GXYLT1	283464	broad.mit.edu;mdanderson.org	37	12	42491294	42491294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	GXYLT1	NM_173601	exon7	c.C1111A	p.H371N	CGTCATGGTAAAC		64	4	0.06	53	0	0		47		65	0	0.00			
TUBA1A	7846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49579631	49579631	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_001270399	exon4	c.C518G	p.P173R	GGCGCCGGGTAAA		219	39	0.18	161	0	0				2287	305	0.13			
MMP19	4327	broad.mit.edu;bcgsc.ca	37	12	56231059	56231081	+	Frame_Shift_Del	DEL	AGGGCTGGTTTGGCACTCCCGTA	AGGGCTGGTTTGGCACTCCCGTA	-	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	AGGGCTGGTTTGGCACTCCCGTA	AGGGCTGGTTTGGCACTCCCGTA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	MMP19	NM_002429	exon9	c.1266_1288del	p.422_430del	CAGCCGAGGGCTG		165	0	0.00	118	0	0		61		11	0	0.00			
GRIP1	23426	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	66838439	66838439	+	Missense_Mutation	SNP	C	C	T	rs369501964		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	GRIP1	NM_001178074	exon12	c.G1456A	p.E486K	CTTCTTCGAAGGT		194	32	0.16	149	1	0.0067114094		106		2	1	0.50			
PLXNC1	10154	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	94542893	94542893	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_005761	exon1	c.T146A	p.I49N	GAGCCATCGCGGC		29	5	0.17	10	0	0				0	0				
SSH1	54434	broad.mit.edu	37	12	109181808	109181809	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	SSH1,NS,carcinoma,0,1	SSH1	NM_018984	exon15	c.3106_3107insC	p.A1036fs	CTGGGGCGGGTTT		156	4	0.03	107	0	0		144	1	26	0	0.00			
NCOR2	9612	mdanderson.org	37	12	124887093	124887093	+	Silent	SNP	C	C	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	NCOR2_ENST00000405201,NS,carcinoma,0,11	NCOR2_ENST00000405201	NM_006312	exon16	c.G1497A	p.Q499Q	CTGCTGCTGTTGT		74	5	0.07	43	1	0.023255814		0	11	26	1	0.04			
IRS2	8660	mdanderson.org	37	13	110435299	110435299	+	Silent	SNP	C	C	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_003749	exon1	c.G3102A	p.P1034P	CGGCGGCGGTGGC		14	2	0.14	19	0	0				0	0				
DCUN1D2	55208	mdanderson.org	37	13	114138337	114138337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_001014283	exon2	c.G38A	p.R13H	AACTGGCGGACCT		47	3	0.06	63	0	0				9	0	0.00			
MAPKBP1	23005	mdanderson.org	37	15	42114276	42114276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_001128608	exon26	c.G3017T	p.S1006I	GCAGCAGCTGCCT		113	5	0.04	92	0	0				26	0	0.00			
RLBP1	6017	mdanderson.org	37	15	89761813	89761813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_000326	exon4	c.C124A	p.R42S	TGTGGCGGGGCAG		81	3	0.04	53	0	0				0	0				
MEF2A	4205	mdanderson.org	37	15	100214645	100214645	+	Silent	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_005587	exon6	c.G444T	p.V148V	TCCAGTGACCAGC		131	5	0.04	124	0	0				52	0	0.00			
MSLN	10232	mdanderson.org	37	16	815590	815590	+	Silent	SNP	C	C	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_005823	exon10	c.C768T	p.G256G	GCTGGGCCAGCCC		39	3	0.08	27	0	0				0	0				
CDH5	1003	broad.mit.edu	37	16	66437043	66437044	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	CDH5	NM_001795	exon12	c.2326_2327insC	p.S776fs	TACGGCTCGGACC		146	7	0.05	150	0	0		111		34	0	0.00			
SPATA2L	124044	mdanderson.org	37	16	89763952	89763952	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_152339	exon3	c.C1065A	p.Y355X	TGCCTGGTAGCCT		18	2	0.11	18	0	0				10	0	0.00			
MPO	4353	mdanderson.org	37	17	56355261	56355261	+	Silent	SNP	C	C	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_000250	exon7	c.G1131A	p.L377L	AAAGGGCAGCAGG		29	3	0.10	23	0	0				2	0	0.00			
AXIN2	8313	mdanderson.org	37	17	63554672	63554672	+	Silent	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	AXIN2,NS,carcinoma,0,1	AXIN2	NM_004655	exon2	c.C67A	p.R23R	GGGGCCGCGGGGC		38	3	0.08	31	0	0		0	1	22	0	0.00			
UNK	85451	mdanderson.org	37	17	73812897	73812897	+	Silent	SNP	C	C	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_001080419	exon8	c.C1008T	p.S336S	GTCCAGCCCCACC		17	2	0.12	23	0	0				15	0	0.00			
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	74003793	74003794	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	AT	AT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	EVPL,NS,malignant_melanoma,0,1	EVPL	NM_001988	exon22	c.5493_5494del	p.1831_1832del	TGTGTCATAGATC		49	15	0.31	75	0	0		155		2	0	0.00			
TNRC6C	57690	mdanderson.org	37	17	76046266	76046266	+	Missense_Mutation	SNP	G	G	A	rs202206566		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	TNRC6C,rectum,carcinoma,0,1	TNRC6C	NM_018996	exon4	c.G1123A	p.V375I	CCTACCGTACAGC		16	3	0.19	31	0	0		0	1	15	0	0.00			
PDE6G	5148	mdanderson.org	37	17	79620321	79620321	+	Silent	SNP	C	C	T	rs370812916		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_002602	exon2	c.G15A	p.P5P	CTTGGGCGGTTCC		31	3	0.10	24	0	0				15	0	0.00			
LDLRAD4	753	mdanderson.org	37	18	13387732	13387732	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_181482	exon3	c.C11G	p.A4G	CGGAAGCTGGTTT		27	3	0.11	38	0	0				2	0	0.00			
REXO1	57455	broad.mit.edu	37	19	1827048	1827048	+	Silent	SNP	T	T	G	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	REXO1	NM_020695	exon2	c.A1740C	p.P580P	GGAGGATGGGGCG		84	21	0.25	54	8	0.1481481481		55		12	0	0.00			
DPP9	91039	mdanderson.org	37	19	4688811	4688811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_139159	exon16	c.C1843A	p.H615N	GCTTGTGCAGGGG		50	3	0.06	38	0	0				67	0	0.00			
PALM3	342979	broad.mit.edu	37	19	14164676	14164676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	PALM3	NM_001145028	exon6	c.A1763G	p.E588G	ACTCCTTCCTCCT		130	4	0.03	124	0	0		26		228	0	0.00			
UPF1	5976	mdanderson.org	37	19	18971766	18971766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_002911	exon17	c.G2432A	p.G811D	TCAGCGGCTCCCT		50	3	0.06	42	0	0				111	0	0.00			
.	0	broad.mit.edu	37	19	20680085	20680085	+	RNA	DEL	A	A	-	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	.	.	.	.	TGTTCCAAAGGAA		6	2	0.33	8	0	0				0	0				
GRIN2D	2906	mdanderson.org	37	19	48945587	48945587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_000836	exon12	c.G2621T	p.R874L	GCCTGCGGCACTG		56	3	0.05	34	0	0				3	0	0.00			
DHDH	27294	mdanderson.org	37	19	49438276	49438276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	DHDH,right_lower_lobe,carcinoma,0,1	DHDH	NM_014475	exon2	c.G110T	p.R37L	CGGCCCGCGATCT		21	2	0.10	36	0	0		0	1	8	0	0.00			
ZNF525	170958	broad.mit.edu	37	19	53885254	53885254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	ZNF525	.	.	.	.	TGACAAGGCTTAC		28	3	0.11	29	0	0		35		5	0	0.00			
RASGRP3	25780	mdanderson.org	37	2	33783348	33783348	+	Silent	SNP	G	G	T	rs376806433	alternate_allele	TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_001139488	exon16	c.G1650T	p.A550A	CCGGGCGCCCTCC		45	3	0.07	67	0	0				13	0	0.00			
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	105886112	105886112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_004257	exon11	c.A2023G	p.K675E	CCAGCTTCCCGTG		40	10	0.25	35	0	0				31	9	0.29			
ATRN	8455	broad.mit.edu	37	20	3451967	3451969	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	GCT	GCT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	ATRN	NM_139321	exon1	c.213_215del	p.71_72del	GCCGCCGCTGCTG		9	3	0.33	8	0	0		118		1	0	0.00			
GZF1	64412	mdanderson.org	37	20	23346327	23346327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_022482	exon1	c.G1307T	p.G436V	CCTACGGCTGCAC		13	2	0.15	8	0	0				12	1	0.08			
L3MBTL1	26013	mdanderson.org	37	20	42159018	42159018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_032107	exon10	c.G1085A	p.G362D	CTGCTGGCTGGTT		114	5	0.04	98	0	0				6	0	0.00			
EEF1A2	1917	broad.mit.edu	37	20	62120282	62120282	+	Missense_Mutation	SNP	T	T	G	rs200931909		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	EEF1A2,bladder,carcinoma,0,5	EEF1A2	NM_001958	exon7	c.A1253C	p.Y418S	GGCGGGTACTGGG		74	24	0.32	46	13	0.2826086957		60	5	6	1	0.17			
KRTAP10-6	386674	mdanderson.org	37	21	46011801	46011801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_198688	exon1	c.G565T	p.A189S	AGACCGCCTGGCA		153	5	0.03	142	0	0				0	0				
ZDHHC8	29801	mdanderson.org	37	22	20131012	20131012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_013373	exon10	c.G1859T	p.R620L	GCGCCCGCAACCC		21	2	0.10	16	0	0				16	0	0.00			
LZTR1	8216	mdanderson.org	37	22	21348866	21348866	+	Silent	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_006767	exon15	c.G1635T	p.L545L	TGTGCTGCTCATC		36	3	0.08	30	0	0				20	0	0.00			
CELSR1	9620	mdanderson.org	37	22	46768935	46768935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_014246	exon25	c.C7604A	p.A2535D	AGGATGGCAACCA		54	3	0.06	51	0	0				9	0	0.00			
VHL	7428	mdanderson.org	37	3	10191524	10191524	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	VHL,NS,carcinoma,0,1	VHL	NM_000551	exon3	c.G517T	p.E173X	AAGCCTGAGAATT		41	3	0.07	52	0	0		0	1	88	0	0.00			
HACL1	26061	ucsc.edu;bcgsc.ca	37	3	15621444	15621444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	HACL1	NM_012260	exon9	c.C776A	p.P259Q	CAGTATGGATGGT		42	4	0.10	68	0	0		33		66	0	0.00			
QRICH1	54870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49094416	49094416	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_198880	exon3	c.A1217T	p.Y406F	TTCTGGTACGTGC		105	16	0.15	131	0	0				113	34	0.30			
MIR1324	100302212	bcgsc.ca	37	3	75679944	75679944	+	RNA	SNP	C	C	T	rs7614638	by2hit2allele	TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	.	.	.	.	TCCTGCCCTCACT		69	14	0.20	78	3	0.0384615385				3	1	0.33			
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	rs121913284		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	PIK3CA_ENST00000263967,NS,adenocarcinoma,0,61	PIK3CA_ENST00000263967	NM_006218	exon5	c.T1035A	p.N345K	CGTGAATGTAAAT		89	26	0.29	64	0	0		0	61	18	7	0.39			
SCARB2	950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	77091110	77091110	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	SCARB2,NS,carcinoma,-2,1	SCARB2	NM_005506	exon8	c.C1023G	p.H341Q	GTAAAAGTGTGGG		89	11	0.12	172	0	0		-2	1	123	17	0.14			
SDHA	6389	broad.mit.edu	37	5	228449	228449	+	Splice_Site	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	SDHA	NM_004168	exon6	c.770+1G>T	.	CACAGGGTAGGAA		52	3	0.06	51	0	0		80		0	0				
CHSY3	337876	mdanderson.org	37	5	129241175	129241175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_175856	exon1	c.C653A	p.P218Q	AGCCCCCGCCACC		50	3	0.06	53	0	0				1	0	0.00			
GRK6	2870	mdanderson.org	37	5	176863196	176863196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_001004106	exon12	c.C1180T	p.R394W	ATCAAGCGGGAGG		47	3	0.06	75	0	0				133	1	0.01			
LPAL2	80350	mdanderson.org	37	6	160921922	160921922	+	RNA	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	.	.	.	.	AACTCTGTCCATT		44	3	0.07	52	0	0				1	0	0.00			
NOD1	10392	broad.mit.edu	37	7	30491698	30491698	+	Missense_Mutation	SNP	G	G	T	rs5743343	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	NOD1	NM_006092	exon6	c.C1335A	p.N445K	GCGTGTGTTCCGC		117	4	0.03	79	0	0		79		10	0	0.00			
H2AFV	94239	mdanderson.org	37	7	44874113	44874113	+	Missense_Mutation	SNP	T	T	C	rs1802437	bycluster;by2hit2allele	TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_012412	exon5	c.A374G	p.Q125R	GTTTTCTGCTGTC		76	6	0.08	92	1	0.0108695652	0.001			604	0	0.00			
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47947691	47947691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_138295	exon9	c.C1385T	p.S462F	ACTTGGGAGTCAG		69	9	0.13	75	0	0				2	0	0.00			
GTF2IRD2P1	0	broad.mit.edu	37	7	72663998	72663998	+	RNA	SNP	T	T	G	rs2539034	bycluster	TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	.	.	.	.	CCGGGGTCCTTGA		125	3	0.02	110	1	0.0090909091				0	0				
ZNF277	11179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	111926968	111926969	+	Frame_Shift_Ins	INS	-	-	AGTCC	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	ZNF277	NM_021994	exon2	c.132_133insAGTCC	p.E44fs	GCCAGAAAGTCCA		96	13	0.14	103	0	0		46		17	0	0.00			
PRSS3	5646	mdanderson.org	37	9	33794809	33794809	+	Missense_Mutation	SNP	G	G	A	rs201061108		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_001197097	exon2	c.G20A	p.S7N	AGACAAGTGGCTT		44	4	0.09	62	0	0				0	0				
SIGMAR1	10280	mdanderson.org	37	9	34635841	34635841	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_005866	exon4	c.C460A	p.H154N	GCCCGTGTACTAC		30	3	0.10	45	0	0				55	0	0.00			
FAM120A	23196	mdanderson.org	37	9	96320139	96320139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_014612	exon14	c.C2515T	p.R839C	AAGATGCGCCAGA		33	3	0.09	27	0	0				47	0	0.00			
RABEPK	10244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127996190	127996190	+	Silent	SNP	T	T	C	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_005833	exon8	c.T1050C	p.C350C	GCTCTGTTTGGTG		192	15	0.08	208	0	0				41	4	0.10			
STS	412	mdanderson.org	37	X	7171292	7171292	+	Missense_Mutation	SNP	G	G	T	rs377179856	alternate_allele	TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_000351	exon2	c.G67T	p.A23S	AGCCACGCAGCAT		39	3	0.08	59	0	0				6	0	0.00			
TFE3	7030	mdanderson.org	37	X	48900701	48900701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-A9SE-01A-21D-A435-10	TCGA-XE-A9SE-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6a58d663-cd26-4aba-b604-263d1fd05531	7a457edc-11a8-4600-b310-4375e3d2c130	.	.	NM_006521	exon1	c.G52A	p.G18S	GAGGGCCCTCCGC		19	2	0.11	14	0	0				18	0	0.00			
