Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
SCNN1D	6339	mdanderson.org	37	1	1226955	1226955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001130413	exon18	c.G2374T	p.A792S	AGCTGGGCTGGGC		42	3	0.07	56	0	0				5	0	0.00			
SKI	6497	mdanderson.org	37	1	2160973	2160973	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_003036	exon1	c.G768T	p.P256P	CCCGCCGCACAAG		30	2	0.07	34	0	0				23	0	0.00			
KCNAB2	8514	mdanderson.org	37	1	6142261	6142261	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001199862	exon5	c.G307T	p.E103X	ATGGCAGAGCAGC		47	3	0.06	64	0	0				24	0	0.00			
PGD	5226	broad.mit.edu	37	1	10464289	10464289	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	PGD	NM_002631	exon5	c.G402T	p.G134G	GGAAGGGGCCCGG		59	3	0.05	83	0	0		39		1353	0	0.00			
PGBD5	79605	bcgsc.ca;mdanderson.org	37	1	230503883	230503883	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	PGBD5	.	.	.	.	TGGTGAGGAGGAG		112	5	0.04	180	0	0		73		1	0	0.00			
PRR26	414235	mdanderson.org	37	10	707987	707987	+	RNA	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	.	.	.	.	CCCGTGGCTCCAC		42	3	0.07	62	0	0				0	0				
WDFY4	57705	broad.mit.edu	37	10	49951285	49951285	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	WDFY4	NM_020945	exon12	c.G2151T	p.L717L	CTGCCTGCTGGGC		98	4	0.04	130	0	0		205		2	0	0.00			
PLCE1	51196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95987141	95987141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_016341	exon5	c.C1888T	p.H630Y	TTGGTGCATGTGG		165	35	0.21	194	0	0				9	4	0.44			
HPX	3263	mdanderson.org	37	11	6452451	6452451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_000613	exon10	c.G1379A	p.C460Y	TGAGTGCAGCCCA		47	3	0.06	75	0	0				44	0	0.00			
MAPK8IP1	9479	mdanderson.org	37	11	45924975	45924975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_005456	exon6	c.C1477T	p.H493Y	CAGACCCACCGGG		18	3	0.17	48	0	0				127	0	0.00			
LRP4	4038	broad.mit.edu	37	11	46924405	46924405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	LRP4	NM_002334	exon2	c.C128A	p.T43N	ATGCAGGTACACT		131	4	0.03	232	0	0		160		17	0	0.00			
SLC3A2	6520	mdanderson.org	37	11	62648706	62648706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001012662	exon4	c.G517T	p.V173L	CTGAAGGTGGCAG		46	4	0.09	70	0	0				325	0	0.00			
ANKRD42	338699	mdanderson.org	37	11	82922394	82922394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_182603	exon5	c.G424T	p.G142W	TTTCATGGGCGGC		55	4	0.07	114	0	0				8	0	0.00			
GRM5	2915	broad.mit.edu	37	11	88742239	88742239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	GRM5	.	.	.	.	CTCTTACGCATCT		204	6	0.03	426	0	0		414		0	0				
SIK3	23387	mdanderson.org	37	11	116718216	116718216	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_025164	exon22	c.C3610T	p.Q1204X	GAAACTGCTGGCT		52	4	0.08	99	0	0				55	0	0.00			
FBXL14	144699	broad.mit.edu	37	12	1703090	1703090	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	FBXL14	NM_152441	exon1	c.T143G	p.V48G	GCCTCCACCCCCC		44	30	0.68	22	11	0.5		19		75	30	0.40			
HSD17B6	8630	mdanderson.org	37	12	57178677	57178677	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_003725	exon4	c.G613T	p.E205X	ATAGTTGAACCTG		92	5	0.05	105	0	0				23	0	0.00			
FOXN4	121643	ucsc.edu	37	12	109724470	109724470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	FOXN4	NM_213596	exon7	c.C676A	p.H226N	GGAAGTGCTCCTT		40	4	0.10	42	0	0		74		0	0				
SETD1B	23067	mdanderson.org	37	12	122265972	122265972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_015048	exon16	c.G5594A	p.C1865Y	ACAGCTGCAACGT		43	3	0.07	87	0	0				108	0	0.00			
LATS2	26524	mdanderson.org	37	13	21563351	21563351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	LATS2_ENST00000382592,NS,carcinoma,+1,2	LATS2_ENST00000382592	NM_014572	exon4	c.C568A	p.P190T	CGTAGGGGGTACC		45	3	0.07	72	0	0		1	2	6	0	0.00			
ATP12A	479	mdanderson.org	37	13	25265283	25265283	+	Silent	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001185085	exon8	c.C981T	p.F327F	CCTTTTCTTCATC		48	5	0.10	84	6	0.0714285714				47	1	0.02			
.	0	broad.mit.edu	37	13	82265134	82265134	+	RNA	DEL	T	T	-	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	.	.	.	.	TGTTTATTTTTTT		121	7	0.06	162	0	0				482	0	0.00			
IRS2	8660	mdanderson.org	37	13	110436262	110436262	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_003749	exon1	c.C2139A	p.T713T	CGCAGAGGTGGGT		43	3	0.07	44	0	0				1	0	0.00			
ADPRHL1	113622	mdanderson.org	37	13	114083363	114083363	+	Missense_Mutation	SNP	C	C	T	rs377658823		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_138430	exon4	c.G550A	p.A184T	CTTGTGCGGCGAA		37	3	0.08	62	0	0				7	0	0.00			
MLH3	27030	hgsc.bcm.edu	37	14	75514926	75514926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_014381	exon2	c.C1433A	p.A478E	TCTGATGCTACAA		93	4	0.04	137	0	0				6	0	0.00			
FLVCR2	55640	mdanderson.org	37	14	76045333	76045333	+	Silent	SNP	C	C	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_017791	exon1	c.C18A	p.P6P	AGGTCCCAACCAG		49	3	0.06	59	0	0				15	0	0.00			
SYNE3	161176	mdanderson.org	37	14	95921773	95921773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_152592	exon5	c.C1078A	p.Q360K	CAGGCTGCAGGCC		45	3	0.07	70	0	0				1	0	0.00			
PLCB2	5330	mdanderson.org	37	15	40580988	40580988	+	Nonsense_Mutation	SNP	G	G	T	rs61755439	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_004573	exon32	c.C3486A	p.C1162X	GCACTCGCAGGCC		73	4	0.05	94	0	0				51	0	0.00			
LMAN1L	79748	bcgsc.ca;mdanderson.org	37	15	75112999	75112999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	LMAN1L	NM_021819	exon8	c.G798T	p.E266D	CCTGGAGATGCAG		75	5	0.07	67	0	0		43		0	0				
FAHD1	81889	mdanderson.org	37	16	1877842	1877842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_031208	exon1	c.G612T	p.E204D	CGATGAGATCGAG		107	5	0.05	164	0	0				56	0	0.00			
FBXL19	54620	mdanderson.org	37	16	30939251	30939251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001099784	exon5	c.G654T	p.E218D	AAGGGAGGCAGGG		27	3	0.11	39	0	0				31	0	0.00			
ZNF646	9726	mdanderson.org	37	16	31088604	31088604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_014699	exon2	c.G959T	p.R320M	GTGAAAGGCAGGA		50	3	0.06	82	0	0				17	0	0.00			
.	0	broad.mit.edu	37	16	32070612	32070612	+	RNA	SNP	A	A	C	rs368458790	bycluster	TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	.	.	.	.	TCCTGCAAGGCTT		27	5	0.19	43	1	0.023255814				0	0				
.	440348	broad.mit.edu;mdanderson.org	37	16	74425946	74425946	+	Nonsense_Mutation	SNP	C	C	T	rs369331764		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	NPIPL2_ENST00000429990,NS,carcinoma,0,2	.	.	.	.	.	AAAAAACAAAACA		42	6	0.14	48	1	0.0208333333			2	6	0	0.00			
ZNF469	84627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88501926	88501926	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001127464	exon2	c.G7964C	p.G2655A	TGGAAGGAGGGCC		17	8	0.47	36	0	0				0	0				
NLE1	54475	mdanderson.org	37	17	33469134	33469134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_018096	exon2	c.C26T	p.A9V	GCCACCGCCTCGT		27	3	0.11	54	0	0				9	0	0.00			
SRCIN1	80725	mdanderson.org	37	17	36714529	36714529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_025248	exon11	c.G2135A	p.R712H	AGGGTGCGCTGCC		26	2	0.08	51	1	0.0196078431				3	0	0.00			
RPL19	6143	hgsc.bcm.edu	37	17	37360424	37360424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	RPL19,NS,carcinoma,-1,1	RPL19	NM_000981	exon5	c.C451T	p.R151C	AAGGCCCGCAAGA		31	2	0.06	27	1	0.037037037		-1	1	14796	15	0.00			
KRT33A	3883	mdanderson.org	37	17	39507011	39507011	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_004138	exon1	c.C9A	p.Y3X	ACAACTGTAAGAC		44	3	0.07	53	0	0				0	0				
KANSL1	284058	hgsc.bcm.edu;broad.mit.edu	37	17	44109654	44109662	+	In_Frame_Del	DEL	GACCTGTAG	GACCTGTAG	-	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	GACCTGTAG	GACCTGTAG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001193466	exon14	c.2842_2850del	p.948_950del	TCTGATGACCTGT		29	11	0.38	21	0	0				171	0	0.00			
ABCA9	10350	mdanderson.org	37	17	66992072	66992072	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	ABCA9,NS,malignant_melanoma,-2,2	ABCA9	NM_080283	exon26	c.C3519A	p.P1173P	TGTGAAGGGAGGT		56	3	0.05	43	0	0		-2	2	2	0	0.00			
MAP2K2	5605	mdanderson.org	37	19	4110627	4110627	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_030662	exon3	c.C330A	p.A110A	CCGGATGGCCGGC		46	3	0.07	50	0	0				622	0	0.00			
LRG1	116844	mdanderson.org	37	19	4538473	4538473	+	Missense_Mutation	SNP	G	G	T	rs200192398	by1000genomes;alternate_allele	TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	LRG1,colon,carcinoma,+1,1	LRG1	NM_052972	exon2	c.C523A	p.R175S	GGAGGCGGTTCCC		44	3	0.07	64	0	0		1	1	13	0	0.00			
PLIN3	10226	hgsc.bcm.edu	37	19	4859920	4859920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	PLIN3,bladder,carcinoma,-2,1	PLIN3	NM_001164189	exon3	c.C183A	p.D61E	TGCTGCGTCGCAG		97	4	0.04	110	0	0		-2	1	178	0	0.00			
ZNF564	163050	broad.mit.edu	37	19	12637879	12637879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	ZNF564	NM_144976	exon4	c.C1043A	p.S348Y	CTGGAAGAACTGA		95	4	0.04	126	0	0		55		42	0	0.00			
ZNF676	163223	ucsc.edu	37	19	22363172	22363172	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	ZNF676	NM_001001411	exon3	c.C1347T	p.Y449Y	ACATTTGTAGGGT		75	5	0.07	55	3	0.0545454545		146		125	16	0.13			
MAG	4099	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	35790585	35790585	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_080600	exon5	c.G544T	p.E182X	CTGGGGGAGCCCG		41	8	0.20	41	0	0				0	0				
RYR1	6261	mdanderson.org	37	19	38958374	38958374	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001042723	exon25	c.G3303T	p.V1101V	GCGCGTGGGCTGG		46	3	0.07	51	0	0				4	1	0.25			
LIPE	3991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42912431	42912431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_005357	exon3	c.G1463T	p.G488V	ACCAGCCCAATGG		102	27	0.26	129	0	0				112	31	0.28			
ZNF233	353355	ucsc.edu	37	19	44778238	44778238	+	Silent	SNP	T	T	C	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	ZNF233	NM_001207005	exon5	c.T1425C	p.T475T	CCACACTGGAGAG		82	1	0.01	72	0	0		73		29	5	0.17			
ZNF671	79891	broad.mit.edu	37	19	58232944	58232944	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	ZNF671,NS,carcinoma,0,1	ZNF671	NM_024833	exon4	c.C510A	p.G170G	TATTGGGCCACAT		188	4	0.02	183	0	0		55	1	11	0	0.00			
OSR1	130497	broad.mit.edu	37	2	19553461	19553461	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	OSR1	NM_145260	exon2	c.G106C	p.D36H	GATGGTCCGAAGG		101	3	0.03	126	0	0		29		0	0				
ASXL2	55252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25976403	25976403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	ASXL2_ENST00000435504,NS,carcinoma,0,2	ASXL2_ENST00000435504	NM_018263	exon10	c.G1142A	p.S381N	TATTACCTCTGCC		81	14	0.17	132	0	0		0	2	3	0	0.00			
ASPRV1	151516	mdanderson.org	37	2	70187846	70187846	+	Silent	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_152792	exon1	c.G975A	p.L325L	GAGCTCCAGGTCA		55	3	0.05	63	0	0				3	0	0.00			
.	0	broad.mit.edu	37	2	91887904	91887905	+	RNA	INS	-	-	T	rs369805878	alternate_allele	TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	.	.	.	.	ATTTTCCATTTTT		141	20	0.14	174	8	0.0459770115				0	0				
RGPD4	285190	hgsc.bcm.edu;broad.mit.edu	37	2	108488726	108488726	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	RGPD4,right_upper_lobe,carcinoma,+2,1	RGPD4	NM_182588	exon20	c.G4266T	p.G1422G	GAAAGGGACAGAA		91	19	0.21	128	0	0		2	1	0	0				
STAT1	6772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191843624	191843624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_007315	exon21	c.G1831A	p.A611T	TGATGGCCCCTTC		66	15	0.23	88	0	0				227	3	0.01			
GAL3ST2	64090	mdanderson.org	37	2	242738496	242738496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	GAL3ST2,NS,carcinoma,0,1	GAL3ST2	NM_022134	exon2	c.C46A	p.L16I	GTCATCCTCCTCC		61	4	0.07	68	0	0		0	1	0	0				
UQCC	55245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	33891797	33891797	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	UQCC,NS,carcinoma,+1,1	UQCC	NM_018244	exon10	c.A841T	p.K281X	GATTCTTCTCCAC		135	30	0.22	156	0	0		1	1	57	15	0.26			
SOGA1	140710	broad.mit.edu	37	20	35443918	35443918	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	SOGA1_ENST00000237536,bladder,carcinoma,+1,4	SOGA1	NM_080627	exon5	c.C1927A	p.R643R	AGAGTCGGACCGC		60	3	0.05	68	0	0		136	4	12	0	0.00			
DOPEY2	9980	broad.mit.edu	37	21	37609660	37609660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	DOPEY2,NS,carcinoma,0,1	DOPEY2	NM_005128	exon16	c.C2723T	p.T908M	CCCCTACGGCCAA		98	4	0.04	98	0	0		184	1	27	0	0.00			
ITGB2	3689	mdanderson.org	37	21	46308741	46308741	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001127491	exon14	c.C1947A	p.G649G	CTGCAGGCCCGGA		38	3	0.08	33	0	0				617	0	0.00			
IL17RA	23765	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	17589771	17589771	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	IL17RA	NM_014339	exon13	c.G1662A	p.S554S	GCTGTCGGGGGAC		60	11	0.18	66	1	0.0151515152		62		47	9	0.19			
.	29801	bcgsc.ca	37	22	20117004	20117004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	.	.	.	.	GTGCTGCGGGAAG		29	4	0.14	27	0	0				0	0				
CCDC157	550631	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	22	30771567	30771567	+	Missense_Mutation	SNP	G	G	A	rs368250287		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001017437	exon10	c.G1772A	p.R591H	ACATCCGCATCCG		97	5	0.05	107	0	0				19	0	0.00			
GGA1	26088	broad.mit.edu	37	22	38027039	38027039	+	Silent	SNP	G	G	T	rs138927569	alternate_allele	TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	GGA1,NS,carcinoma,+1,1	GGA1	NM_013365	exon14	c.G1461T	p.P487P	GCCTCCGCAGCAG		111	5	0.05	120	0	0		39	1	309	0	0.00			
MKL1	57591	mdanderson.org	37	22	40815349	40815349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_020831	exon12	c.C1093A	p.P365T	AGACAGGCAGTGA		47	3	0.06	60	0	0				52	0	0.00			
TOPAZ1	375337	broad.mit.edu	37	3	44285524	44285524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001145030	exon2	c.A1526G	p.K509R	GGAAAAAGGCTTC		130	3	0.02	186	0	0				0	0				
KLHL18	23276	mdanderson.org	37	3	47374795	47374795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_025010	exon5	c.G749T	p.C250F	GTTGCTGCCACAA		43	3	0.07	56	0	0				52	0	0.00			
NCKIPSD	51517	mdanderson.org	37	3	48719045	48719045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_016453	exon5	c.C767A	p.S256Y	ACTTGGGACACGG		71	4	0.06	86	0	0				127	0	0.00			
MCM2	4171	broad.mit.edu	37	3	127323901	127323901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	MCM2	NM_004526	exon4	c.G575A	p.R192Q	GCCCCCGGCTGGA		161	4	0.02	181	1	0.0055248619		79		165	2	0.01			
TRH	7200	mdanderson.org	37	3	129695840	129695840	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	TRH,right_upper_lobe,carcinoma,0,2	TRH	NM_007117	exon3	c.G510A	p.E170E	AGAAGAGGAGGAG		52	3	0.06	73	0	0		0	2	33	0	0.00			
CHST2	9435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142840363	142840363	+	Silent	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_004267	exon2	c.C705T	p.S235S	GTATAGCCCCGCG		93	20	0.22	111	0	0				282	89	0.32			
DCUN1D1	54165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	182665069	182665069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_020640	exon6	c.C657A	p.F219L	CGTACTGAAGTCT		184	18	0.10	82	0	0				272	33	0.12			
MUC4	4585	broad.mit.edu	37	3	195505783	195505783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	MUC4_ENST00000463781,NS,neuroblastoma,+1,1	MUC4	NM_018406	exon2	c.C12668T	p.T4223I	AGAGGGGTGGCGT		285	7	0.02	121	1	0.0082644628		1505	1	42	1	0.02			
MUC4	4585	bcgsc.ca;mdanderson.org	37	3	195506559	195506559	+	Silent	SNP	A	A	G	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	MUC4	NM_018406	exon2	c.T11892C	p.G3964G	GGCGTGACCTGTG		87	12	0.14	112	2	0.0178571429		1505		17	3	0.18			
MUC4	4585	hgsc.bcm.edu	37	3	195506626	195506626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	MUC4_ENST00000463781,NS,carcinoma,-1,3	MUC4_ENST00000463781	NM_018406	exon2	c.C11825T	p.T3942I	GAGGAAGTGCTGG		128	6	0.05	190	1	0.0052631579		-1	3	22	0	0.00			
MUC4	4585	hgsc.bcm.edu	37	3	195506986	195506986	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	MUC4_ENST00000463781,extremity,malignant_melanoma,-1,2	MUC4_ENST00000463781	NM_018406	exon2	c.C11465G	p.T3822S	GGGGTGGTGTCAC		69	3	0.04	62	1	0.0161290323		-1	2	15	0	0.00			
MUC4	4585	broad.mit.edu	37	3	195509580	195509580	+	Missense_Mutation	SNP	G	G	C	rs78985720	alternate_allele	TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	MUC4	NM_018406	exon2	c.C8871G	p.H2957Q	GGTGGCGTGACCT		146	4	0.03	65	0	0		1505		49	0	0.00			
MUC4	4585	bcgsc.ca	37	3	195510020	195510020	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	MUC4	NM_018406	exon2	c.A8431T	p.T2811S	GACCTGTGGACAC		88	13	0.15	115	1	0.0086956522		1505		7	0	0.00			
LRRC33	375387	broad.mit.edu	37	3	196386681	196386681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	LRRC33,NS,carcinoma,-1,1	LRRC33	NM_198565	exon3	c.C167T	p.P56L	GCCTCCCGCCCCA		427	7	0.02	227	0	0		91	1	47	0	0.00			
MEF2C	4208	broad.mit.edu	37	5	88024334	88024334	+	Missense_Mutation	SNP	G	G	T	rs17852408		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	MEF2C	NM_001193347	exon11	c.C1106A	p.P369Q	GATGGTGGCATGT		247	4	0.02	328	0	0		184		1	0	0.00			
ANKHD1	54882	hgsc.bcm.edu	37	5	139887489	139887489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	ANKHD1_ENST00000261805,colon,carcinoma,+1,3	ANKHD1_ENST00000261805	NM_017747	exon20	c.G3671T	p.R1224L	CCAATCGGAACAC		115	5	0.04	145	0	0		1	3	57	0	0.00			
PCDHA6	0	broad.mit.edu	37	5	140209500	140209500	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	PCDHA6_ENST00000529310,NS,carcinoma,+1,6	PCDHA6	NM_018909	exon1	c.G1824T	p.S608S	GCTTTCGTATGAG		57	3	0.05	76	0	0		442	6	0	0				
PTK7	5754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43100169	43100169	+	Silent	SNP	C	C	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001270398	exon7	c.C996T	p.D332D	TGAAGACATGCCG		128	27	0.21	123	0	0				168	61	0.36			
PHKG1	5260	mdanderson.org	37	7	56149324	56149324	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001258459	exon10	c.A1013T	p.K338M	AGTACCTTGAACT		21	2	0.10	50	0	0				1	0	0.00			
GTF2IRD2P1	0	broad.mit.edu	37	7	72663998	72663998	+	RNA	SNP	T	T	G	rs2539034	bycluster	TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	.	.	.	.	CCGGGGTCCTTGA		178	6	0.03	120	1	0.0083333333				0	0				
FAM185A	222234	broad.mit.edu	37	7	102401776	102401776	+	Silent	SNP	T	T	G	rs2537454		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	FAM185A	NM_001145268	exon4	c.T711G	p.G237G	AGATGGTTTGCTG		536	5	0.01	452	0	0		10		21	0	0.00			
KIAA1549	57670	mdanderson.org	37	7	138555928	138555928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_001164665	exon13	c.C4526A	p.A1509E	CTTTCCGCCACTC		33	3	0.09	24	0	0				24	0	0.00			
SSPO	23145	mdanderson.org	37	7	149500591	149500591	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_198455	exon54	c.G7992T	p.L2664L	CCTTCTGCATGAC		44	4	0.09	104	0	0				0	0				
.	0	broad.mit.edu	37	8	30210434	30210434	+	RNA	SNP	A	A	C	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	.	.	.	.	CCTGTGACCCCCG		44	9	0.20	52	6	0.1153846154				5	1	0.20			
DENND3	22898	mdanderson.org	37	8	142200511	142200511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_014957	exon20	c.G3134T	p.W1045L	GCCTGTGGTGCTG		34	3	0.09	49	0	0				24	0	0.00			
ADCK5	203054	mdanderson.org	37	8	145616415	145616415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_174922	exon6	c.G625T	p.A209S	GCTGCCGCCAGCC		50	3	0.06	61	0	0				75	1	0.01			
ZNF462	58499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	109689998	109689998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_021224	exon3	c.C3805A	p.Q1269K	TGTAGGCAGTGCT		80	57	0.71	60	0	0				3	3	1.00			
TMEM245	23731	mdanderson.org	37	9	111881924	111881924	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_032012	exon1	c.C270T	p.C90C	AGTGCCGCATAGC		42	3	0.07	36	0	0				17	0	0.00			
C9orf171	389799	broad.mit.edu	37	9	135447890	135447890	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	C9orf171,right_upper_lobe,carcinoma,0,1	C9orf171	NM_207417	exon7	c.A956C	p.H319P	ACACCCACCCCTA		47	12	0.26	32	6	0.1875		53	1	0	0				
SLC34A3	142680	mdanderson.org	37	9	140128920	140128920	+	Silent	SNP	C	C	A	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	NM_080877	exon11	c.C1146A	p.G382G	CGCGGGCGCCGGC		23	2	0.09	29	0	0				1	0	0.00			
SSX6	280657	hgsc.bcm.edu	37	X	47969832	47969832	+	RNA	SNP	T	T	G	novel		TCGA-XE-AANJ-01A-11D-A435-10	TCGA-XE-AANJ-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a43cd317-9fe6-401e-971c-f82498898d79	c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18	.	.	.	.	.	.	CCTAGTTGAGTCA		233	21	0.09	224	0	0				0	0				
