Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
AGRN	375790	mdanderson.org	37	1	955749	955749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_198576	exon1	c.G197T	p.C66F	ACTCCTGCAAGGT		25	3	0.12	47	0	0				4	0	0.00			
KIF1B	23095	broad.mit.edu;mdanderson.org	37	1	10355744	10355744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	KIF1B	NM_183416	exon17	c.G1559A	p.R520H	AGCGGCGCCAGGA		66	4	0.06	105	0	0		242		2	0	0.00			
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	C	T	rs75226570		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	.	.	.	.	AACTTACTGTTGT		26	3	0.12	42	1	0.0238095238				2	0	0.00			
CROCCP2	0	broad.mit.edu	37	1	16945182	16945184	+	RNA	DEL	AAT	AAT	-	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	AAT	AAT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	.	.	.	.	GATGAAAATAATA		6	2	0.33	6	0	0				7	0	0.00			
PADI3	51702	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17607185	17607185	+	Missense_Mutation	SNP	G	G	A	rs146338253	byfrequency;alternate_allele	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	PADI3,NS,carcinoma,+1,1	PADI3	NM_016233	exon15	c.G1655A	p.R552H	GGAACCGTGAGGT		92	9	0.10	124	0	0		1	1	0	0				
PUM1	9698	mdanderson.org	37	1	31426815	31426815	+	Missense_Mutation	SNP	A	A	T	rs2275741	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_014676	exon15	c.T2337A	p.N779K	ACTGCCATTCGTG		51	2	0.04	75	0	0				14	0	0.00			
MACF1	23499	broad.mit.edu	37	1	39801335	39801335	+	Silent	SNP	A	A	G	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	MACF1,NS,carcinoma,0,1	MACF1	.	.	.	.	TGAAAAAGGGAAA		211	6	0.03	284	0	0		909	1	0	0				
COL9A2	1298	mdanderson.org	37	1	40775830	40775830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001852	exon15	c.C745A	p.H249N	ATCCATGAGGGCC		28	3	0.11	52	0	0				3	0	0.00			
NRD1	4898	bcgsc.ca	37	1	52255291	52255291	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	NRD1	NM_002525	exon32	c.C3411A	p.V1137V	CCAGTTGACCAGG		47	4	0.09	81	0	0		89		215	0	0.00			
DOCK7	85440	mdanderson.org	37	1	62970399	62970399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001271999	exon37	c.A4639G	p.R1547G	GAAGCCTGAGGCA		45	3	0.07	76	1	0.0131578947				14	0	0.00			
STRIP1	85369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110596376	110596376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_033088	exon21	c.G2356A	p.A786T	GACCGGGCCCACA		101	32	0.32	106	0	0				69	18	0.26			
PTGFRN	5738	mdanderson.org	37	1	117487338	117487338	+	Silent	SNP	G	G	C	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_020440	exon3	c.G456C	p.R152R	CGCGCGGCCCCCG		28	9	0.32	44	6	0.1363636364				2	0	0.00			
ADAMTSL4	54507	mdanderson.org	37	1	150530476	150530476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_019032	exon14	c.C2233T	p.H745Y	ACCCAGCACCGCC		43	3	0.07	47	0	0				13	0	0.00			
ZNF503	84858	mdanderson.org	37	10	77159069	77159069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_032772	exon2	c.C1379A	p.A460E	AGCGCCGCAGCCG		26	3	0.12	24	0	0				1	0	0.00			
DLG5	9231	mdanderson.org	37	10	79579175	79579175	+	Missense_Mutation	SNP	A	A	G	rs142466775	bycluster;byfrequency	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_004747	exon17	c.T3575C	p.L1192P	TTCCGCAGGATGG		38	3	0.08	57	0	0	0			36	0	0.00			
MUC2	4583	mdanderson.org	37	11	1093210	1093210	+	Missense_Mutation	SNP	G	G	C	rs56396523	bycluster	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_002457	exon30	c.G5029C	p.A1677P	CCAACAGCCATCA		16	5	0.31	22	5	0.2272727273				0	0				
MUC2	4583	hgsc.bcm.edu	37	11	1093420	1093420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	MUC2_ENST00000441003,NS,carcinoma,-2,2	MUC2_ENST00000441003	NM_002457	exon30	c.A5239G	p.I1747V	ACACCCATCACCA		35	2	0.06	51	2	0.0392156863		-2	2	0	0				
FAR1	84188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	13743357	13743357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_032228	exon10	c.C1208T	p.T403I	GGAATACTGAGAA		105	35	0.33	185	0	0				2	1	0.50			
.	0	bcgsc.ca	37	11	50227517	50227517	+	RNA	SNP	C	C	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	.	.	.	.	CACCGGCATTAGG		62	26	0.42	81	0	0				0	0				
C11orf95	65998	mdanderson.org	37	11	63533331	63533331	+	Silent	SNP	T	T	C	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001144936	exon2	c.A585G	p.E195E	CTCCTCTTCTTCC		18	2	0.11	25	1	0.04				0	0				
C11orf95	65998	broad.mit.edu;mdanderson.org	37	11	63533337	63533337	+	RNA	SNP	C	C	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001144936	exon2	c.G579A	p.E193E	TTCTTCCTCCTCC		23	3	0.13	30	0	0				0	0				
RNF169	254225	mdanderson.org	37	11	74521243	74521243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001098638	exon3	c.G591T	p.K197N	AGAAAAGTTACAA		53	3	0.06	69	0	0				0	0				
CEP164	22897	mdanderson.org	37	11	117263830	117263830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001271933	exon19	c.G2613T	p.Q871H	AGAGCAGTATGAA		34	3	0.09	54	0	0				15	0	0.00			
C11orf44	283171	mdanderson.org	37	11	130583145	130583145	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001271983	exon2	c.G267T	p.Q89H	GAGCCAGTGTGGG		29	3	0.10	39	0	0				0	0				
.	0	broad.mit.edu	37	12	8363889	8363890	+	RNA	DEL	AA	AA	-	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	AA	AA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	.	.	.	.	TATATTAAGTTAC		17	5	0.29	9	0	0				0	0				
.	0	broad.mit.edu	37	12	8363896	8363896	+	RNA	DEL	A	A	-	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	.	.	.	.	AGTTACAATTAAT		16	5	0.31	7	0	0				0	0				
TUBA1A	7846	bcgsc.ca	37	12	49580192	49580192	+	Missense_Mutation	SNP	A	A	G	rs16918521	byfrequency	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	TUBA1A	NM_001270399	exon3	c.T276C	p.L92L	TGTGATAAGTTGC		140	12	0.09	185	6	0.0324324324		32		756	5	0.01			
LRP1	4035	mdanderson.org	37	12	57588470	57588470	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_002332	exon50	c.G8179T	p.E2727X	GAGGACGAGACCC		34	3	0.09	40	0	0				19	0	0.00			
P2RX7	5027	bcgsc.ca;mdanderson.org	37	12	121605293	121605293	+	Silent	SNP	C	C	T	rs147505804	bycluster	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	P2RX7	NM_002562	exon8	c.C747T	p.G249G	TCAGGGCGGAATA		82	5	0.06	90	0	0		53		0	0				
LATS2	26524	mdanderson.org	37	13	21562308	21562308	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_014572	exon4	c.C1611A	p.C537X	GCCTGCGCACAGG		41	3	0.07	55	0	0				4	0	0.00			
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	95858899	95858899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_005845	exon8	c.C1048A	p.R350S	ACACGCGGCTGGC		94	30	0.32	106	0	0				11	5	0.45			
UPF3A	65110	mdanderson.org	37	13	115051797	115051797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_023011	exon4	c.G442T	p.V148L	GCAGTGGTAGAGT		75	4	0.05	119	0	0				17	0	0.00			
NPAS3	64067	mdanderson.org	37	14	34269689	34269689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001164749	exon12	c.G2176A	p.A726T	GCGGCCGCCCGCA		39	3	0.08	32	0	0				0	0				
GPR135	64582	mdanderson.org	37	14	59930940	59930940	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_022571	exon1	c.C1005A	p.I335I	GATCATGATGAGG		32	3	0.09	28	0	0				0	0				
UBR1	197131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43335557	43335557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_174916	exon15	c.A1705G	p.K569E	CAGCTTTGTGACA		170	33	0.19	155	0	0				6	1	0.17			
MYH11	4629	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	16	15869978	15869978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001040114	exon9	c.C867A	p.H289Q	AAAGATGTGGAAT		96	5	0.05	146	0	0				14	0	0.00			
TCF25	22980	mdanderson.org	37	16	89965261	89965261	+	Missense_Mutation	SNP	G	G	A	rs139981645	bycluster	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_014972	exon11	c.G1202A	p.R401H	TGATCCGCCTCTT		39	3	0.08	41	0	0	0			105	0	0.00			
.	0	broad.mit.edu	37	17	21731270	21731270	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	UBBP4_ENST00000584755,bladder,carcinoma,0,6	.	.	.	.	.	CCCCGATCAGCAG		124	3	0.02	125	1	0.008			6	0	0				
FLJ36000	0	broad.mit.edu	37	17	21906899	21906899	+	RNA	DEL	C	C	-	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	.	.	.	.	ACCGGTCTTTGGT		12	2	0.17	29	0	0				0	0				
SPAG5	10615	mdanderson.org	37	17	26905514	26905514	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_006461	exon21	c.C3231A	p.R1077R	AAGTGAGCGGGTA		42	3	0.07	47	0	0				142	1	0.01			
ZPBP2	124626	mdanderson.org	37	17	38028693	38028693	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	ZPBP2,NS,carcinoma,0,1	ZPBP2	NM_199321	exon5	c.G577T	p.E193X	TCTGTTGAAATTC		91	5	0.05	102	0	0		0	1	0	0				
CASC3	22794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38318013	38318013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	CASC3,NS,carcinoma,+1,1	CASC3	NM_007359	exon4	c.A305G	p.E102G	GTGAAGAAGGTGA		141	27	0.19	164	0	0		1	1	56	19	0.34			
LRRC37A4P	0	broad.mit.edu	37	17	43591984	43591985	+	RNA	INS	-	-	G	rs368999726	bycluster	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	.	.	.	.	GTCATGCGGAGCG		40	3	0.08	41	1	0.0243902439				3	0	0.00			
KCNH6	81033	hgsc.bcm.edu	37	17	61622539	61622539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_030779	exon13	c.T2605C	p.S869P	CCTGCCTCCAATG		99	5	0.05	67	0	0				9	0	0.00			
TMEM259	91304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1014364	1014364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_033420	exon2	c.C334T	p.R112C	CCACACGCAGGAT		216	51	0.24	308	0	0				146	30	0.21			
PRKCSH	5589	mdanderson.org	37	19	11546995	11546995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001001329	exon2	c.G57T	p.R19S	CAAGAGGCCCCGG		43	3	0.07	33	0	0				382	1	0.00			
CAPNS1	826	bcgsc.ca	37	19	36632054	36632054	+	Silent	SNP	C	C	T	rs17879825		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	CAPNS1	NM_001749	exon2	c.C141T	p.G47G	CGGCGGCGGTGGT		118	8	0.07	150	4	0.0266666667		19		0	0				
DMRTC2	63946	mdanderson.org	37	19	42352958	42352958	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001040283	exon5	c.G543A	p.W181X	ACACTGGCTGCCT		47	3	0.06	63	0	0				0	0				
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42874860	42874860	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001271938	exon40	c.A7013T	p.N2338I	TTGAAAACTGGGT		84	21	0.25	97	0	0				9	3	0.33			
DHX34	9704	mdanderson.org	37	19	47876120	47876120	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_014681	exon8	c.G1902A	p.P634P	GCGGCCGCTGGAG		42	3	0.07	50	0	0				23	0	0.00			
GLTSCR2	29997	mdanderson.org	37	19	48258024	48258024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_015710	exon8	c.A929G	p.E310G	AGGGGGAGCCAGG		23	3	0.13	35	0	0				1334	1	0.00			
SHANK1	50944	mdanderson.org	37	19	51171612	51171612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_016148	exon22	c.C3605A	p.P1202Q	ATGGCCGGGGCGG		13	2	0.15	13	0	0				0	0				
SIGLECL1	284369	mdanderson.org	37	19	51768757	51768757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_173635	exon3	c.G158A	p.G53D	TGGATGGCAGCCT		101	5	0.05	146	0	0				0	0				
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	15557681	15557681	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_015909	exon24	c.C2733T	p.D911D	TTCAATGTCTTTC		260	59	0.23	262	0	0				15	2	0.13			
RRBP1	6238	broad.mit.edu	37	20	17617269	17617269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	RRBP1	NM_004587	exon6	c.G991A	p.A331T	AGCTGGCCTGCAT		52	4	0.08	42	0	0		157		143	0	0.00			
BMP7	655	mdanderson.org	37	20	55841035	55841035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001719	exon1	c.C144A	p.S48R	CTCCTGGCTGCGG		33	3	0.09	34	0	0				1	0	0.00			
LAMA5	3911	mdanderson.org	37	20	60898602	60898602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_005560	exon45	c.C5974A	p.R1992S	AGCCACGGCAGGC		45	3	0.07	54	0	0				13	0	0.00			
TNFRSF6B	8771	mdanderson.org	37	20	62328205	62328205	+	Missense_Mutation	SNP	G	G	A	rs61760055	bycluster	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_003823	exon1	c.G85A	p.G29R	GTACGCGGAGTGG		71	5	0.07	49	0	0				10	0	0.00			
BAGE	85319	broad.mit.edu	37	21	11062214	11062214	+	RNA	DEL	C	C	-	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	.	.	.	.	AAGAAACCCCCCA		7	3	0.43	4	0	0				0	0				
SNAP29	9342	bcgsc.ca	37	22	21242096	21242096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	SNAP29	NM_004782	exon5	c.G749T	p.S250I	TAAAAAGCACAGA		49	4	0.08	70	0	0		22		73	0	0.00			
GGT5	2687	mdanderson.org	37	22	24628058	24628058	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001099781	exon5	c.A715G	p.R239G	CCAGCCTCCCCGT		39	3	0.08	88	1	0.0113636364				18	0	0.00			
RNF215	200312	mdanderson.org	37	22	30775729	30775729	+	Missense_Mutation	SNP	G	G	T	rs149275092	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001017981	exon8	c.C1082A	p.T361N	GGGCAGGTCTGCT		53	3	0.06	72	0	0				26	0	0.00			
CMTM8	152189	broad.mit.edu	37	3	32280541	32280541	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	CMTM8	NM_178868	exon1	c.G77C	p.S26T	CCACCAGCAGCAG		178	4	0.02	260	0	0		9		2	0	0.00			
SH3BP2	6452	mdanderson.org	37	4	2826352	2826352	+	Silent	SNP	G	G	T	rs149515000	alternate_allele	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001145856	exon4	c.G423T	p.A141A	GCGGGCGGCTGAG		42	3	0.07	48	0	0				5	0	0.00			
MFSD10	10227	mdanderson.org	37	4	2933865	2933865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001146069	exon7	c.C709A	p.L237M	ACCCCAGGGCGAT		10	2	0.20	31	0	0				27	0	0.00			
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55599321	55599321	+	Missense_Mutation	SNP	A	A	T	rs121913507	bycluster	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	KIT,colon,carcinoma,+1,932	KIT	NM_000222	exon17	c.A2447T	p.D816V	CCAGAGACATCAA		61	36	0.59	96	0	0		1	932	50	50	1.00			
DMP1	1758	mdanderson.org	37	4	88583550	88583550	+	Missense_Mutation	SNP	G	G	A	rs200520896	by1000genomes	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_004407	exon6	c.G620A	p.G207D	GAGACGGCTCCGA		33	3	0.09	60	0	0	0			0	0				
.	0	broad.mit.edu	37	4	118496039	118496040	+	RNA	INS	-	-	A	rs375830371	bycluster	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	.	.	.	.	TTTTTTTAATGGG		7	4	0.57	8	0	0				5	0	0.00			
SPCS3	60559	broad.mit.edu	37	4	177248366	177248366	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	SPCS3	NM_021928	exon4	c.G348A	p.P116P	TAATCCGAAGCTG		298	6	0.02	474	0	0		15		18	0	0.00			
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	153149891	153149891	+	Missense_Mutation	SNP	G	G	A	rs370642711		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	GRIA1_ENST00000544403,NS,carcinoma,0,3	GRIA1_ENST00000544403	NM_001258021	exon13	c.G2216A	p.R739Q	AGCAGCGGAAACC		147	36	0.24	198	1	0.0050505051		0	3	0	0				
PANK3	79646	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	167995711	167995711	+	Silent	SNP	C	C	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	PANK3	NM_024594	exon2	c.G321A	p.L107L	CGTCTGCAATGTT		75	5	0.07	88	0	0		39		8	0	0.00			
DNAH8	1769	mdanderson.org	37	6	38881682	38881682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001206927	exon67	c.C9917T	p.A3306V	ATCTTGCAGTCAA		116	5	0.04	150	1	0.0066666667				0	0				
.	378108	broad.mit.edu	37	7	72436666	72436666	+	Missense_Mutation	SNP	A	A	G	rs73702636		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	TRIM74,NS,carcinoma,0,1	.	.	.	.	.	AGCTCCAGCAGGC		120	6	0.05	115	2	0.0173913043			1	0	0				
GPR22	2845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107115390	107115390	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_005295	exon3	c.G885A	p.R295R	CCTCCGGCGAGCT		303	59	0.19	215	0	0				0	0				
C7orf60	154743	broad.mit.edu	37	7	112462251	112462251	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	C7orf60,NS,carcinoma,0,1	C7orf60	NM_152556	exon5	c.C766A	p.R256R	TCCATCGCTGGTA		115	3	0.03	91	0	0		55	1	14	0	0.00			
AGO2	27161	broad.mit.edu;mdanderson.org	37	8	141561493	141561493	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	EIF2C2,NS,carcinoma,0,1	.	NM_012154	exon11	c.C1312A	p.R438R	TGTTCCGCATGTC		76	4	0.05	94	0	0			1	4	0	0.00			
AQP7	364	bcgsc.ca	37	9	33385733	33385733	+	Missense_Mutation	SNP	C	C	T	rs201117022	bycluster	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	AQP7,head_neck,carcinoma,0,1	AQP7	NM_001170	exon7	c.G657A	p.M219I	TGTGTTCATGCCA		42	10	0.24	38	1	0.0263157895		58	1	2	0	0.00			
.	0	bcgsc.ca	37	9	77550214	77550214	+	RNA	SNP	C	C	A	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	.	.	.	.	CACATGCAGCACA		26	4	0.15	35	0	0				0	0				
SLC34A3	142680	mdanderson.org	37	9	140128577	140128577	+	Silent	SNP	G	G	T	rs34664302	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_080877	exon10	c.G942T	p.A314A	GTTTGCGGGCACG		17	2	0.12	16	0	0				0	0				
GPM6B	2824	mdanderson.org	37	X	13825789	13825789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	.	NM_001001996	exon2	c.C161A	p.A54D	GGGCTAGCCCTGT		117	5	0.04	107	0	0				0	0				
DLG3	1741	broad.mit.edu	37	X	69713237	69713237	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANR-01A-11D-A435-10	TCGA-XE-AANR-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	13cd0963-4be6-4087-b13b-50df1732c263	b4cb7d5c-2f34-456b-a858-320fde2a5f2b	.	DLG3	NM_020730	exon7	c.G774T	p.T258T	CAAAACGAAACGT		290	4	0.01	252	0	0		100		76	0	0.00			
