Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
DPYD	1806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	97839132	97839132	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_000110	exon16	c.C2043A	p.G681G	GGCCAGGCCCATT		202	32	0.16	262	0	0				2	0	0.00			
CELF3	11189	mdanderson.org	37	1	151679994	151679994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_007185	exon7	c.C761A	p.T254N	GATGGGGTGATGG		19	2	0.11	28	0	0				0	0				
SLAMF1	6504	broad.mit.edu	37	1	160604502	160604502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	SLAMF1	NM_003037	exon3	c.C601A	p.Q201K	CATGCTGGGGGCC		159	4	0.03	193	0	0		74		17	0	0.00			
RNU5F-1	26828	hgsc.bcm.edu	37	1	220156424	220156424	+	RNA	SNP	T	T	C	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	.	.	.	.	ACTTTTTAATAAA		76	16	0.21	109	0	0				0	0				
EFCAB2	84288	mdanderson.org	37	1	245245457	245245457	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_032328	exon5	c.G256T	p.E86X	CTACTAGAAAGAA		25	3	0.12	34	0	0				7	0	0.00			
OR2T34	127068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248737452	248737452	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001001821	exon1	c.C607G	p.L203V	ACGTGAGCATCTT		356	59	0.17	391	0	0				0	0				
ITIH5	80760	mdanderson.org	37	10	7618461	7618461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001001851	exon10	c.C1933A	p.P645T	GTTCGGGTCCCAT		33	3	0.09	51	0	0				8	0	0.00			
GATA3	2625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	8115773	8115773	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001002295	exon6	c.A1122C	p.K374N	ATCCAAAAAGTGC		129	27	0.21	114	0	0				11	0	0.00			
.	0	bcgsc.ca	37	10	42681152	42681152	+	RNA	SNP	C	C	T	rs111787724		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	.	.	.	.	GTGGATCTGGGAC		168	24	0.14	229	19	0.0829694323				12	1	0.08			
RRP12	23223	mdanderson.org	37	10	99126540	99126540	+	Silent	SNP	C	C	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_015179	exon27	c.G3174A	p.E1058E	CTCCTCCTCTTCT		61	4	0.07	91	0	0				144	1	0.01			
CNNM1	26507	mdanderson.org	37	10	101089211	101089211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_020348	exon1	c.G67T	p.A23S	CGAGGCGCTGTGC		26	2	0.08	31	0	0				1	0	0.00			
RBM20	282996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112559661	112559661	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001134363	exon7	c.G1785A	p.K595K	ATACAAGGAATTG		71	16	0.23	87	0	0				0	0				
UBQLN3	50613	broad.mit.edu;mdanderson.org	37	11	5529527	5529527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	UBQLN3	NM_017481	exon2	c.C1262A	p.T421N	TGTCCAGTACTGT		102	5	0.05	161	0	0		107		0	0				
DCHS1	8642	mdanderson.org	37	11	6643167	6643167	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	DCHS1,pharynx,carcinoma,0,1	DCHS1	NM_003737	exon21	c.C9740A	p.S3247X	GCAGCTGAGGACA		40	3	0.08	74	0	0		0	1	48	0	0.00			
TMEM135	65084	broad.mit.edu	37	11	87032260	87032260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	TMEM135,colon,carcinoma,+1,1	TMEM135	NM_022918	exon15	c.G1262T	p.R421L	TGAACCGAAAAGT		96	3	0.03	139	0	0		40	1	20	0	0.00			
ZBTB16	7704	mdanderson.org	37	11	114121101	114121101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_006006	exon7	c.G1846T	p.A616S	TACTCGGCCATGA		38	3	0.08	62	0	0				2	0	0.00			
ETV6	2120	mdanderson.org	37	12	12022716	12022716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001987	exon5	c.G822T	p.M274I	CATCATGCACCCT		50	3	0.06	31	0	0				13	0	0.00			
ASB2	51676	broad.mit.edu	37	14	94405527	94405527	+	Missense_Mutation	SNP	T	T	G	rs199833352		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	ASB2	NM_001202429	exon8	c.A1544C	p.H515P	GGCGGGTGCGGGC		65	20	0.31	61	16	0.262295082		71		28	3	0.11			
CEP170B	283638	broad.mit.edu;mdanderson.org	37	14	105353593	105353593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001112726	exon12	c.A3017G	p.Q1006R	GTGAGCAGTCCTC		38	7	0.18	41	0	0				42	5	0.12			
TYRO3	7301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41854893	41854893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_006293	exon4	c.C557T	p.S186F	CTCCCTCTCCATC		76	11	0.14	77	0	0				127	20	0.16			
KBTBD13	390594	mdanderson.org	37	15	65369189	65369189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001101362	exon1	c.G36T	p.W12C	GGTGTGGGTGGGC		26	3	0.12	13	0	0				3	0	0.00			
ARNT2	9915	broad.mit.edu	37	15	80883970	80883970	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	ARNT2	NM_014862	exon18	c.G1980A	p.W660X	GCAGTGGCAAAGC		198	4	0.02	207	1	0.0048309179		88		2	0	0.00			
.	0	broad.mit.edu	37	15	84957480	84957499	+	RNA	DEL	GGCCCCACATCCATTGAGAA	GGCCCCACATCCATTGAGAA	-	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	GGCCCCACATCCATTGAGAA	GGCCCCACATCCATTGAGAA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	.	.	.	.	TGCACTGGCCCCA		15	7	0.47	7	0	0				0	0				
C16orf11	146325	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	614076	614076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	C16orf11	NM_145270	exon2	c.C782T	p.A261V	CCCCGGCCCCCCG		17	4	0.24	26	0	0		27		0	0				
EME2	197342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1825969	1825969	+	Silent	SNP	C	C	A	rs143964421	bycluster;byfrequency;by1000genomes	TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001257370	exon7	c.C951A	p.S317S	CCCCTCCCCCCGC		35	8	0.23	40	0	0	0			1	0	0.00			
LOC653786	0	broad.mit.edu	37	16	22579566	22579569	+	RNA	DEL	ATTC	ATTC	-	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	ATTC	ATTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	.	.	.	.	GGGTTAATTCATC		85	13	0.15	90	2	0.0222222222				0	0				
FAM65A	79567	mdanderson.org	37	16	67575907	67575907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001193523	exon13	c.G1278T	p.Q426H	GCAGCAGCCCGAG		25	3	0.12	48	0	0				32	0	0.00			
CENPT	80152	hgsc.bcm.edu	37	16	67864336	67864336	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_025082	exon11	c.C819T	p.A273A	GCGACCGGCAGCC		100	4	0.04	111	0	0				179	0	0.00			
ZBTB4	57659	broad.mit.edu;mdanderson.org	37	17	7366300	7366300	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	ZBTB4	NM_001128833	exon4	c.C2001A	p.Y667X	GGAGTAGTAGGGC		41	3	0.07	43	0	0		163		23	0	0.00			
KRTAP4-8	728224	mdanderson.org	37	17	39254149	39254149	+	Missense_Mutation	SNP	G	G	C	rs201246375		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_031960	exon1	c.C188G	p.T63S	CAGCAGGTGGGCT		16	3	0.19	23	0	0				0	0				
CDH19	28513	mdanderson.org	37	18	64211262	64211262	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001271028	exon7	c.C1160A	p.S387X	ACAAATGATCCCT		81	4	0.05	129	0	0				1	0	0.00			
DOT1L	84444	mdanderson.org	37	19	2226425	2226425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_032482	exon27	c.G3905T	p.G1302V	TGTCGGGGGCTGA		20	2	0.10	22	1	0.0454545455				79	0	0.00			
OR7C2	26658	broad.mit.edu	37	19	15052604	15052604	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	OR7C2	NM_012377	exon1	c.304delT	p.F102fs	CAGATATTTTTTT		191	8	0.04	166	0	0		50		0	0				
ZNF676	163223	ucsc.edu	37	19	22363172	22363172	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	ZNF676	NM_001001411	exon3	c.C1347T	p.Y449Y	ACATTTGTAGGGT		75	3	0.04	74	3	0.0405405405		146		56	15	0.27			
ZNF540	163255	hgsc.bcm.edu	37	19	38103206	38103206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_152606	exon5	c.T1025C	p.L342P	GACAACTTACCCG		77	4	0.05	99	0	0				17	0	0.00			
TOMM40	10452	broad.mit.edu	37	19	45404037	45404037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	TOMM40	NM_001128917	exon6	c.G694T	p.G232C	GCCCTGGGTGGAG		127	4	0.03	159	0	0		13		478	0	0.00			
ZNF524	147807	mdanderson.org	37	19	56113901	56113901	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_153219	exon2	c.G423A	p.P141P	GAAGCCGCACCAG		25	3	0.12	26	0	0				34	0	0.00			
.	0	bcgsc.ca	37	2	6636132	6636132	+	RNA	SNP	G	G	T	rs112561968	bycluster;byfrequency	TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	.	.	.	.	TGCTTCGTTAAAC		40	7	0.18	48	0	0				0	0				
ANKRD36BP2	0	broad.mit.edu	37	2	89104503	89104504	+	RNA	INS	-	-	C	rs149625899	bycluster;by1000genomes	TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	.	.	.	.	ATTTTTTTCAGAT		20	11	0.55	16	6	0.375				0	0				
FAM178B	51252	mdanderson.org	37	2	97633354	97633354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001122646	exon5	c.C637A	p.L213M	GCTCCAGGGCCTG		23	2	0.09	28	0	0				5	0	0.00			
CCDC74B-AS1	0	broad.mit.edu	37	2	130894105	130894106	+	RNA	INS	-	-	CATATACA	rs111582269	bycluster;by1000genomes	TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	.	.	.	.	CTGTCTTCTGGGC		6	3	0.50	8	0	0				0	0				
ANKRD30BL	554226	mdanderson.org	37	2	132919099	132919099	+	RNA	SNP	C	C	T	rs199974298	bycluster	TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	.	.	.	.	TGTCGTCTTCTTC		73	7	0.10	85	2	0.0235294118	0.009			1	0	0.00			
ACVR2A	92	broad.mit.edu	37	2	148676128	148676128	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	ACVR2A	NM_001616	exon7	c.T929A	p.L310Q	CTGGCCTAAAAGA		107	15	0.14	137	9	0.0656934307		125		11	0	0.00			
STRADB	55437	hgsc.bcm.edu	37	2	202344886	202344886	+	Silent	SNP	C	C	T	rs146098224		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_018571	exon12	c.C1245T	p.Y415Y	CTCATACTGGGAA		146	10	0.07	142	0	0				155	0	0.00			
CPS1	1373	mdanderson.org	37	2	211444493	211444493	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001122633	exon6	c.A545T	p.K182M	GGGATAAGGTATA		41	3	0.07	55	0	0				7	0	0.00			
UGT1A10	54575	mdanderson.org	37	2	234545847	234545847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_019075	exon1	c.G679T	p.A227S	AGAAATGCCCTAG		133	5	0.04	193	1	0.0051813472				0	0				
PASK	23178	broad.mit.edu	37	2	242063441	242063441	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	PASK	NM_015148	exon11	c.A2827C	p.T943P	GGCGGGTCCTGGC		57	14	0.25	66	12	0.1818181818		230		110	8	0.07			
SIGLEC1	6614	mdanderson.org	37	20	3673769	3673769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_023068	exon14	c.G3518A	p.R1173H	AGGTTGCGGGGCG		19	2	0.11	24	0	0				10	0	0.00			
PREX1	57580	broad.mit.edu;mdanderson.org	37	20	47273634	47273634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	PREX1_ENST00000396220,NS,carcinoma,0,2	PREX1	NM_020820	exon18	c.C2067A	p.N689K	GGACTGGTTGAGG		49	3	0.06	50	0	0		441	2	122	0	0.00			
BAGE2	85319	broad.mit.edu	37	21	11043637	11043638	+	RNA	INS	-	-	A	rs113014139	bycluster	TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	.	.	.	.	AAAAAAGAAAAAA		6	4	0.67	6	0	0				0	0				
MX1	4599	bcgsc.ca	37	21	42823120	42823120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	MX1	NM_001144925	exon17	c.G1459T	p.V487F	ACAGATGTTTCGA		137	6	0.04	104	0	0		58		433	0	0.00			
ITIH1	3697	broad.mit.edu	37	3	52825612	52825612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	ITIH1	NM_002215	exon21	c.G2574T	p.M858I	CACGATGGTGGTG		54	3	0.06	59	1	0.0169491525		108		0	0				
TMCC1	23023	broad.mit.edu	37	3	129370614	129370614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	TMCC1	NM_001017395	exon6	c.C1672A	p.R558S	AGATGCGCGTCTG		78	4	0.05	79	0	0		105		36	0	0.00			
DGKQ	1609	mdanderson.org	37	4	961354	961354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001347	exon8	c.G970A	p.G324S	CGGCACCGGCCAG		52	3	0.06	92	0	0				10	0	0.00			
KIAA1239	57495	mdanderson.org	37	4	37447775	37447775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001144990	exon7	c.G4165T	p.G1389C	AGCAGTGGTGAAA		51	3	0.06	76	1	0.0131578947				0	0				
ATP10D	57205	mdanderson.org	37	4	47563065	47563065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_020453	exon14	c.A2641G	p.R881G	GCCATGAGGTTGG		61	3	0.05	96	0	0				6	0	0.00			
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55593667	55593667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_000222	exon11	c.A1733G	p.Y578C	TTCCTTATGATCA		89	25	0.28	137	0	0				223	143	0.64			
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55599348	55599348	+	Missense_Mutation	SNP	T	T	A	rs121913524	alternate_allele	TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	KIT,NS,lymphoid_neoplasm,0,31	KIT	NM_000222	exon17	c.T2474A	p.V825D	ATGTGGTTAAAGG		51	17	0.33	90	0	0		0	31	338	172	0.51			
EIF4E	1977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	99812429	99812429	+	Silent	SNP	C	C	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001130678	exon3	c.G240A	p.L80L	CAGCCGCAGGTTT		230	43	0.19	333	0	0				164	67	0.41			
PALLD	23022	broad.mit.edu	37	4	169632923	169632923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	PALLD_ENST00000335742,NS,carcinoma,-1,2	PALLD	NM_001166108	exon10	c.G1813T	p.A605S	TTCAATGCTGCTG		145	5	0.03	162	1	0.0061728395		179	2	5	0	0.00			
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	89949379	89949379	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	GPR98	NM_032119	exon20	c.3987delC	p.Y1329fs	TTGTACTTTACCG		154	26	0.17	158	0	0		605		2	0	0.00			
PWWP2A	114825	mdanderson.org	37	5	159546149	159546149	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_052927	exon1	c.G247T	p.E83X	CCGCCTCTGGGCT		12	3	0.25	8	0	0				8	0	0.00			
CPLX2	10814	broad.mit.edu	37	5	175306867	175306869	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	AGG	AGG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	CPLX2	NM_006650	exon5	c.224_226del	p.75_76del	AGAAGAAGGAGGA		129	9	0.07	144	0	0		42		0	0				
BTN2A3P	54718	hgsc.bcm.edu;broad.mit.edu	37	6	26422353	26422353	+	RNA	SNP	C	C	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	BTN2A3,NS,carcinoma,0,9	BTN2A3	.	.	.	.	ATGGAACCAGCTG		78	6	0.08	94	1	0.0106382979		0	9	2	0	0.00			
CLIC1	1192	mdanderson.org	37	6	31702039	31702039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001288	exon2	c.C41T	p.A14V	CTGCCAGCCTGAA		45	3	0.07	75	0	0				493	0	0.00			
ANKS1A	23294	hgsc.bcm.edu	37	6	34857324	34857324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	ANKS1A,NS,carcinoma,0,1	ANKS1A	NM_015245	exon1	c.G145A	p.G49S	AGCGGCGGCGGCG		6	3	0.50	6	1	0.1666666667		0	1	3	0	0.00			
FOXK1	221937	mdanderson.org	37	7	4799057	4799057	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001037165	exon7	c.G1527T	p.A509A	GCCCGCGGGCCAC		19	2	0.11	30	0	0				16	0	0.00			
RAC1	5879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6426908	6426908	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_006908	exon2	c.C101G	p.P34R	ATATCCCTACTGT		142	18	0.13	127	0	0				59	10	0.17			
LRCH4	4034	broad.mit.edu	37	7	100183685	100183685	+	Silent	SNP	A	A	C	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	LRCH4	NM_002319	exon1	c.T39G	p.G13G	CTCCTCACCCCCG		102	31	0.30	77	24	0.3116883117		53		94	6	0.06			
MLL3	58508	bcgsc.ca	37	7	151945089	151945089	+	Silent	SNP	G	G	A	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	MLL3	NM_170606	exon14	c.C2430T	p.N810N	CATGATGTTTCCA		489	19	0.04	400	7	0.0175		1564		15	1	0.07	rescued with RNA-seq		
UNC5D	137970	mdanderson.org	37	8	35453077	35453077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_080872	exon4	c.C472T	p.R158W	GATTTACGGAAAA		50	3	0.06	54	0	0				0	0				
ADAMTSL1	92949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	18892551	18892551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001040272	exon26	c.A4808G	p.N1603S	CCTGTAACCAGCA		61	11	0.18	67	0	0				1	0	0.00			
BICD2	23299	mdanderson.org	37	9	95481138	95481138	+	Silent	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001003800	exon5	c.C1789A	p.R597R	CTGCTCGGCCCGC		50	3	0.06	48	0	0				25	0	0.00			
C9orf91	203197	broad.mit.edu	37	9	117379536	117379536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	C9orf91	NM_153045	exon2	c.G61T	p.G21C	TCCCCTGGCTGGA		305	5	0.02	292	1	0.0034246575		32		12	0	0.00			
PPP1R26	9858	ucsc.edu	37	9	138376590	138376590	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_014811	exon4	c.C234A	p.C78X	GGGATGCCACGAC		29	4	0.14	34	0	0				36	0	0.00			
SUPT20HL1	0	bcgsc.ca	37	X	24382372	24382372	+	RNA	SNP	A	A	G	rs2695489	bycluster	TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_001136234	exon1	c.A1495G	p.I499V	GCTGCTATTGCTG		211	27	0.13	209	5	0.023923445				0	0				
NAP1L3	4675	mdanderson.org	37	X	92927835	92927835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AANV-01A-11D-A435-10	TCGA-XE-AANV-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d27a570c-2115-4885-9939-4aa5955bf4cd	b5dc854d-44a1-4ef2-87fe-c65fc39f7d2e	.	.	NM_004538	exon1	c.C469A	p.P157T	CTGTAGGCTCGTA		79	4	0.05	101	0	0				33	0	0.00			
