Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
LRRC7	57554	broad.mit.edu	37	1	70504282	70504282	+	Silent	SNP	T	T	C	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	LRRC7	NM_020794	exon19	c.T2661C	p.P887P	TAGTCCTTTTTCT		170	5	0.03	183	1	0.0054644809		400		1	0	0.00			
SCCPDH	51097	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	246922343	246922343	+	Missense_Mutation	SNP	A	A	G	rs142346609	bycluster;byfrequency;by1000genomes	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_016002	exon7	c.A703G	p.I235V	TGGCCAATTTCTT		162	24	0.15	137	0	0	0.006			77	21	0.27			
P4HA1	5033	hgsc.bcm.edu	37	10	74768046	74768046	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_000917	exon15	c.C1539A	p.S513S	TTTATTGGATACT		114	7	0.06	87	0	0				180	0	0.00			
DENND5A	23258	mdanderson.org	37	11	9225755	9225755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001243254	exon4	c.C401A	p.A134D	GTGAGGGCAAACC		49	3	0.06	74	0	0				37	0	0.00			
LPXN	9404	mdanderson.org	37	11	58322361	58322361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001143995	exon4	c.G286A	p.A96T	ACTGAGCAGCTGC		46	3	0.07	55	0	0				27	0	0.00			
MS4A13	503497	mdanderson.org	37	11	60285575	60285575	+	Missense_Mutation	SNP	A	A	T	rs10736706	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001100909	exon3	c.A19T	p.I7F	TTTCACATTTTCA		59	2	0.03	87	0	0				0	0				
PTGDR2	11251	mdanderson.org	37	11	60621017	60621017	+	Missense_Mutation	SNP	C	C	T	rs145143849	alternate_allele	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_004778	exon2	c.G179A	p.R60H	CGCATGCGGCAGC		43	3	0.07	58	0	0				1	0	0.00			
MIR3680-1	100500917	hgsc.bcm.edu	37	11	63072405	63072405	+	RNA	SNP	C	C	G	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	.	.	.	.	TGTACTCTATATC		41	18	0.44	63	0	0				0	0				
MYO7A	4647	mdanderson.org	37	11	76891521	76891521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001127179	exon22	c.G2688T	p.K896N	GCGCAAGCATCAG		31	3	0.10	35	0	0				3	0	0.00			
ARHGAP20	57569	mdanderson.org	37	11	110561320	110561320	+	Silent	SNP	G	G	A	rs150049858	bycluster;byfrequency	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	ARHGAP20,caecum,carcinoma,0,1	ARHGAP20	NM_020809	exon3	c.C138T	p.S46S	TGGAGCGCTCCTC		64	4	0.06	84	0	0	0.001	0	1	0	0				
HTR3A	3359	mdanderson.org	37	11	113854000	113854000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_000869	exon5	c.G551T	p.W184L	CCAGTTGGCTGCA		44	3	0.07	86	0	0				0	0				
KIAA1551	55196	broad.mit.edu	37	12	32136184	32136184	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_018169	exon4	c.G2295T	p.P765P	GTCACCGTTAGTT		270	4	0.01	100	0	0				619	0	0.00			
KRT78	196374	mdanderson.org	37	12	53233575	53233575	+	Missense_Mutation	SNP	C	C	T	rs373055664		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_173352	exon7	c.G1241A	p.R414H	AGCCTGCGGTAAG		44	3	0.07	48	0	0				0	0				
CCDC60	160777	mdanderson.org	37	12	119954484	119954484	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	CCDC60,bladder,carcinoma,0,1	CCDC60	NM_178499	exon8	c.G940T	p.E314X	ACAATAGAAAATG		45	3	0.07	41	0	0		0	1	0	0				
MRPS31P5	0	broad.mit.edu	37	13	52764064	52764065	+	RNA	INS	-	-	A	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	.	.	.	.	ATGCATTAAAAAA		6	3	0.50	9	0	0				2	0	0.00			
DACH1	1602	mdanderson.org	37	13	72440446	72440446	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_080759	exon1	c.C462T	p.S154S	ACTACTGCTGCTG		19	2	0.11	23	0	0				1	0	0.00			
DCAF5	8816	mdanderson.org	37	14	69619649	69619649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_003861	exon1	c.G47A	p.G16D	AAGAAGCCCACCA		44	3	0.07	40	0	0				22	0	0.00			
KIF26A	26153	mdanderson.org	37	14	104642874	104642874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_015656	exon12	c.G3749T	p.C1250F	GGGAGTGTGATAC		20	2	0.10	13	0	0				72	0	0.00			
DISP2	85455	mdanderson.org	37	15	40660380	40660380	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_033510	exon8	c.G2067A	p.L689L	GCGTCTGCTCTTC		23	3	0.13	38	0	0				0	0				
DET1	55070	broad.mit.edu	37	15	89056263	89056263	+	Silent	SNP	A	A	G	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	DET1	NM_017996	exon6	c.T1605C	p.P535P	CTCAAAAGGGTGA		139	3	0.02	135	0	0		55		41	0	0.00			
PRR25	388199	mdanderson.org	37	16	855797	855797	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001013638	exon1	c.G355T	p.G119X	CCACAGGGAACTC		26	3	0.12	27	0	0				0	0				
PKD1	5310	mdanderson.org	37	16	2162857	2162857	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001009944	exon13	c.G3093A	p.L1031L	GGGGGACAGCACG		18	2	0.11	19	0	0				17	0	0.00			
PPL	5493	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	4943298	4943300	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	CTC	CTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	PPL	NM_002705	exon14	c.1565_1567del	p.522_523del	GGCCTTCTCCTGC		39	11	0.28	48	0	0		168		4	0	0.00			
EXOC3L1	283849	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67218711	67218711	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	EXOC3L1	NM_178516	exon13	c.C1908T	p.G636G	CTCCAGGCCCTGA		25	4	0.16	27	0	0		52		12	1	0.08			
ANKRD11	29123	mdanderson.org	37	16	89357055	89357055	+	Missense_Mutation	SNP	G	G	T	rs142820281	alternate_allele	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	ANKRD11,NS,carcinoma,-2,1	ANKRD11	NM_001256182	exon7	c.C579A	p.D193E	GTTGACGTCTGCC		40	3	0.08	57	0	0		-2	1	88	0	0.00			
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		199	15	0.08	260	10	0.0384615385				89	29	0.33			
ALKBH5	54890	mdanderson.org	37	17	18087632	18087632	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_017758	exon1	c.G75A	p.A25A	TAAGGCGGGCAGC		20	3	0.15	13	0	0				22	0	0.00			
.	0	broad.mit.edu	37	17	20459719	20459719	+	RNA	DEL	A	A	-	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	.	.	.	.	ATATATATATATA		41	11	0.27	132	3	0.0227272727				0	0				
SUPT6H	6830	mdanderson.org	37	17	27028472	27028472	+	Silent	SNP	A	A	G	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	SUPT6H,NS,carcinoma,+1,1	SUPT6H	NM_003170	exon37	c.A5010G	p.A1670A	CCATGCAGCCATC		38	3	0.08	57	0	0		1	1	259	1	0.00			
ATAD5	79915	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29195417	29195417	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	ATAD5	NM_024857	exon12	c.T3300A	p.D1100E	AAGAGATGAGAAA		88	26	0.30	97	1	0.0103092784		150		37	11	0.30			
SLC35G3	146861	broad.mit.edu	37	17	33521194	33521194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_152462	exon1	c.C133A	p.L45M	CACCCAGCAGGGC		73	5	0.07	95	0	0				3	0	0.00			
C17orf96	100170841	broad.mit.edu;mdanderson.org	37	17	36830085	36830085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001130677	exon1	c.G664A	p.A222T	CTGGAGCCTCGGG		63	15	0.24	59	0	0				13	4	0.31			
ARL16	339231	mdanderson.org	37	17	79650804	79650804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001040025	exon1	c.C52T	p.P18S	CACCCGGCACCCG		23	3	0.13	20	0	0				3	0	0.00			
GALR1	2587	mdanderson.org	37	18	74968158	74968158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	GALR1,NS,carcinoma,+1,1	GALR1	NM_001480	exon2	c.G711T	p.K237N	AAAGAAGTCTGAA		45	3	0.07	109	0	0		1	1	0	0				
TMIGD2	126259	bcgsc.ca	37	19	4292842	4292842	+	Silent	SNP	C	C	G	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	TMIGD2	NM_144615	exon5	c.G603C	p.G201G	TGGGGCCCCCCGG		97	6	0.06	102	0	0		38		1	0	0.00			
CD209	30835	mdanderson.org	37	19	7810421	7810421	+	Missense_Mutation	SNP	T	T	C	rs145850292	bycluster;byfrequency;by1000genomes	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_021155	exon4	c.A731G	p.Q244R	TTCAGCTGGGTCA		40	3	0.08	23	0	0	0.002			0	0				
IL12RB1	3594	ucsc.edu	37	19	18180385	18180385	+	Missense_Mutation	SNP	G	G	T	rs191062711	by1000genomes;alternate_allele	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	IL12RB1	NM_005535	exon10	c.C1160A	p.A387E	TGCGGCGCAGTCA		39	4	0.10	31	1	0.0322580645		92		0	0				
.	0	broad.mit.edu	37	19	20242475	20242475	+	RNA	DEL	A	A	-	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	.	.	.	.	GGGTTCAAAGCGA		8	6	0.75	5	0	0				2	0	0.00			
ATP4A	495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36050035	36050035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_000704	exon8	c.T1115C	p.L372P	GCCTCCAGGTTCT		97	13	0.13	89	0	0				1	0	0.00			
HAUS5	23354	mdanderson.org	37	19	36104635	36104635	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_015302	exon2	c.G102T	p.L34L	CAGGCTGTGTCTG		56	4	0.07	42	0	0				124	0	0.00			
MLL4	8085	mdanderson.org	37	19	36212614	36212614	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_014727	exon3	c.G2365T	p.E789X	GGGGTAGAGGAGA		48	3	0.06	63	0	0				88	0	0.00			
LIPE	3991	mdanderson.org	37	19	42906128	42906128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_005357	exon10	c.C3067A	p.P1023T	CGTGCGGCAGGTC		17	2	0.12	21	0	0				12	0	0.00			
SYMPK	8189	broad.mit.edu	37	19	46332317	46332317	+	Silent	SNP	G	G	T	rs373014308	alternate_allele	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	SYMPK,colon,carcinoma,0,3	SYMPK	NM_004819	exon14	c.C1896A	p.A632A	ACCTGCGGCCAGG		226	6	0.03	190	1	0.0052631579		104	3	202	0	0.00			
IL4I1	259307	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	50397675	50397675	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_172374	exon7	c.C483A	p.T161T	GTACTGGGTGAAC		100	5	0.05	122	0	0				56	0	0.00			
ZNF814	730051	bcgsc.ca	37	19	58385788	58385788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	ZNF814	NM_001144989	exon3	c.T970C	p.Y324H	ATTCATAAGGTCT		132	8	0.06	141	0	0		93		21	0	0.00			
MFSD2B	388931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24247062	24247062	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001080473	exon13	c.G1411C	p.A471P	ATCCTTGCTGGGC		67	20	0.30	95	0	0				1	1	1.00			
DTNB	1838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25655860	25655860	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_021907	exon14	c.T1352A	p.L451Q	TCCTGCAGGATCT		31	7	0.23	34	0	0				36	10	0.28			
POTEF	728378	broad.mit.edu	37	2	130877755	130877755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	POTEF	NM_001099771	exon3	c.A334G	p.S112G	TGCTGCTCCCCCT		136	5	0.04	184	2	0.0108695652		140		0	0				
KYNU	8942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	143685255	143685255	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001199241	exon5	c.G318A	p.K106K	GGGGAAGCGTCCT		107	20	0.19	158	0	0				9	1	0.11			
HOXD11	3237	mdanderson.org	37	2	176972598	176972598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_021192	exon1	c.G515A	p.G172D	GCAATGGCATCTT		36	3	0.08	24	0	0				0	0				
SLC4A11	83959	mdanderson.org	37	20	3209870	3209870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001174090	exon16	c.C2018T	p.A673V	GCCATCGCAAAGG		47	3	0.06	66	0	0				39	0	0.00			
ZBED4	9889	mdanderson.org	37	22	50279862	50279862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	ZBED4,NS,carcinoma,+1,2	ZBED4	NM_014838	exon2	c.G2552T	p.S851I	TGCTGAGCCTCGC		50	3	0.06	57	0	0		1	2	26	0	0.00			
UBE2E1	7324	broad.mit.edu	37	3	23848778	23848778	+	Silent	SNP	G	G	T	rs140553923	bycluster;by1000genomes;alternate_allele	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	UBE2E1	NM_003341	exon2	c.G18T	p.S6S	CGATTCGAGGGCC		69	3	0.04	93	0	0		15		164	0	0.00			
GOLGB1	2804	broad.mit.edu	37	3	121395740	121395740	+	Splice_Site	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	GOLGB1	NM_001256486	exon17	c.C9177A	p.N3059K	ACTTACGTTGCTG		171	6	0.04	153	0	0		319		156	1	0.01			
KALRN	8997	broad.mit.edu	37	3	124438155	124438155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	KALRN	NM_001024660	exon60	c.G8799T	p.L2933F	ATGCTTGCAGCAT		124	4	0.03	120	0	0		556		1	0	0.00			
ATP11B	23200	broad.mit.edu	37	3	182598724	182598724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	ATP11B	NM_014616	exon21	c.G2464T	p.G822C	GGTGATGGTGCTA		405	6	0.01	418	0	0		115		16	0	0.00			
MARCH6	10299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	10415633	10415633	+	Missense_Mutation	SNP	C	C	G	rs182494860	bycluster;by1000genomes;alternate_allele	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	MARCH6,caecum,carcinoma,0,1	MARCH6	NM_005885	exon21	c.C2000G	p.T667R	TTTGGACGGGGAC		110	39	0.35	163	0	0		0	1	41	18	0.44			
GPR98	84059	mdanderson.org	37	5	90103520	90103520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_032119	exon73	c.G14938T	p.V4980L	TCAGGAGTGCAGA		49	3	0.06	81	0	0				7	0	0.00			
ANKRD32	84250	mdanderson.org	37	5	94024244	94024244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_032290	exon17	c.G2155T	p.G719C	AAAACTGGTGTGC		101	5	0.05	152	1	0.0065789474				39	0	0.00			
SKIV2L	6499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31936112	31936112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_006929	exon24	c.C2866T	p.P956S	AAGGATCCTCCCC		70	15	0.21	75	0	0				90	10	0.11			
SYNCRIP	10492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	86346826	86346826	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	SYNCRIP,right_upper_lobe,carcinoma,-2,2	SYNCRIP	NM_006372	exon6	c.G525A	p.E175E	TTCATCCTCAAAT		257	62	0.24	232	0	0		-2	2	245	47	0.19			
DACT2	168002	broad.mit.edu;mdanderson.org	37	6	168708534	168708534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	DACT2	NM_214462	exon4	c.G1903A	p.V635M	TGGCCACGGGCCT		22	5	0.23	25	1	0.04		46		138	43	0.31			
VPS41	27072	mdanderson.org	37	7	38902196	38902196	+	Silent	SNP	G	G	T	rs187909170	by1000genomes;alternate_allele	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_080631	exon4	c.C195A	p.G65G	AACCTTGCCATAA		127	5	0.04	72	0	0				45	0	0.00			
KCP	375616	broad.mit.edu	37	7	128548304	128548305	+	RNA	INS	-	-	A	rs10565205	bycluster;by1000genomes	TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	KCP	.	.	.	.	AAGAAAGAAGAAA		8	4	0.50	5	0	0		16		0	0				
TAS2R40	259286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	142919837	142919838	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	AC	AC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	TAS2R40	NM_176882	exon1	c.665_666del	p.222_222del	CAAGAGACACACC		103	23	0.22	70	0	0		64		0	0				
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149486702	149486702	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_198455	exon31	c.C4476T	p.C1492C	GACCTGCGTCCCC		80	18	0.23	62	0	0				0	0				
DUSP26	78986	broad.mit.edu	37	8	33449599	33449599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	DUSP26	NM_024025	exon4	c.C568A	p.P190T	GGTTGGGGATGAT		193	4	0.02	138	0	0		42		0	0				
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	100733195	100733195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_017890	exon39	c.C7045T	p.L2349F	CTCACCCTTGTAC		128	23	0.18	118	0	0				7	3	0.43			
KIAA0020	9933	broad.mit.edu	37	9	2837296	2837296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	KIAA0020	NM_014878	exon3	c.A188G	p.K63R	ACACCCTTTTTCC		147	3	0.02	180	0	0		56		297	0	0.00			
GSN	2934	mdanderson.org	37	9	124088834	124088834	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_000177	exon12	c.G1614T	p.L538L	GAGCCTGTTTGGT		84	4	0.05	85	0	0				128	0	0.00			
STAG2	10735	mdanderson.org	37	X	123191755	123191755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO3-01A-11D-A435-10	TCGA-XE-AAO3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	765d87ae-c060-43d6-bd02-548eeb78c0ec	bfa5e5f7-3f40-441f-a5ea-f48077e1495e	.	.	NM_001042749	exon15	c.G1344T	p.M448I	AATGATGAAAAGA		129	5	0.04	64	0	0				173	0	0.00			
