Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
MIR3675	0	broad.mit.edu	37	1	17185383	17185384	+	RNA	INS	-	-	C	rs112074527	bycluster;by1000genomes	TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	.	.	.	.	AATTTTTAGTGCA		8	3	0.38	11	1	0.0909090909				0	0				
PTGFRN	5738	mdanderson.org	37	1	117487540	117487540	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_020440	exon3	c.G658A	p.V220M	GGGGACGTGCGCC		43	3	0.07	26	0	0				10	0	0.00			
TTF2	8458	broad.mit.edu;bcgsc.ca	37	1	117644003	117644006	+	Splice_Site	DEL	TTTG	TTTG	-	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	TTTG	TTTG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	TTF2	NM_003594	exon23	c.3346_3349del	p.1116_1117del	TTTAGATTTGTTT		47	10	0.21	42	0	0		92		28	0	0.00			
TUFT1	7286	broad.mit.edu	37	1	151546805	151546805	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	TUFT1	NM_020127	exon8	c.G654A	p.E218E	GAGAGAGGAGGAC		313	7	0.02	238	0	0		32		29	0	0.00			
KDM5B	10765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	202710494	202710494	+	Splice_Site	SNP	C	C	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_006618	exon20	c.2945+1G>T	.	TTTTCACCTGGCC		75	17	0.23	44	0	0				1	0	0.00			
EIF2D	1939	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	206781611	206781612	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	CA	CA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	EIF2D	NM_006893	exon4	c.400_401del	p.134_134del	AAATGGCACAGAG		819	184	0.22	595	0	0		42		51	0	0.00			
CDC42BPA	8476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	227335123	227335123	+	Silent	SNP	G	G	A	rs139987030	byfrequency	TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_003607	exon7	c.C831T	p.Y277Y	TTCTCCGTAAAGC		270	70	0.26	132	0	0	0			21	3	0.14			
GPR158	57512	mdanderson.org	37	10	25883231	25883231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_020752	exon9	c.G1903T	p.A635S	GTTCTTGCCTCAA		48	3	0.06	51	1	0.0196078431				0	0				
TNKS2	80351	mdanderson.org	37	10	93617191	93617191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_025235	exon24	c.G2998T	p.V1000F	CAGAAGGTTTGTA		51	3	0.06	79	0	0				44	0	0.00			
B4GALNT4	338707	mdanderson.org	37	11	375478	375478	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	B4GALNT4,NS,carcinoma,0,1	B4GALNT4	NM_178537	exon9	c.C801T	p.P267P	CCTGCCCGGCCTG		43	3	0.07	49	0	0		0	1	203	1	0.00			
MUC2	4583	mdanderson.org	37	11	1092920	1092920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_002457	exon30	c.C4739A	p.T1580N	CACAGACCCCAAC		22	3	0.14	40	1	0.025				39	2	0.05			
TTC17	55761	mdanderson.org	37	11	43469622	43469622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_018259	exon19	c.G2736T	p.E912D	GGTAGAGCTGACT		45	3	0.07	62	0	0				74	0	0.00			
LRP4	4038	mdanderson.org	37	11	46918500	46918500	+	Missense_Mutation	SNP	C	C	T	rs146670859		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_002334	exon8	c.G842A	p.R281H	ACACAGCGGCCTG		39	3	0.08	60	0	0	0			4	0	0.00			
TCIRG1	10312	mdanderson.org	37	11	67817183	67817183	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_006019	exon16	c.G1941A	p.L647L	CATCCTGCTGCTT		14	2	0.14	28	0	0				103	0	0.00			
AQP11	282679	mdanderson.org	37	11	77320415	77320415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_173039	exon3	c.A809G	p.K270R	ATAAAAAGGAATA		38	3	0.08	54	0	0				19	0	0.00			
KDM5A	5927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	432911	432911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001042603	exon15	c.G2005A	p.V669I	CAGGAACAAGTTC		316	62	0.20	177	0	0				43	4	0.09			
AEBP2	121536	mdanderson.org	37	12	19593200	19593200	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001114176	exon1	c.C567T	p.Y189Y	GGGCTACGGGACT		16	2	0.13	9	0	0				15	0	0.00			
.	0	broad.mit.edu	37	12	64081924	64081925	+	RNA	INS	-	-	A	rs35652992	bycluster;by1000genomes	TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	.	.	.	.	TTCACTTAAAAAA		12	4	0.33	5	0	0				0	0				
HSP90B1	7184	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	104333319	104333319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	HSP90B1	NM_003299	exon8	c.G1008A	p.M336I	ACTTATGAATGAT		242	23	0.10	238	1	0.0042016807		72		1078	191	0.18			
PDS5B	23047	mdanderson.org	37	13	33222915	33222915	+	Silent	SNP	T	T	C	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_015032	exon2	c.T6C	p.A2A	CATGGCTCATTCA		37	3	0.08	41	0	0				5	0	0.00			
CTSG	1511	mdanderson.org	37	14	25043631	25043631	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001911	exon4	c.C414A	p.P138P	CGTCCCGGGTCTC		43	3	0.07	37	0	0				5	0	0.00			
CEP128	145508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81227824	81227824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_152446	exon16	c.C2510T	p.A837V	CAAGCTGCATCAA		144	14	0.10	138	0	0				12	0	0.00			
ATXN3	4287	hgsc.bcm.edu	37	14	92537354	92537355	+	In_Frame_Ins	INS	-	-	CTG	rs76478261		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	ATXN3,NS,carcinoma,0,7	ATXN3	NM_004993	exon10	c.916_917insCAG	p.G306delinsQG	GGTCCCCCTGCTG		81	29	0.36	55	0	0		46		23	0	0.00			
XRCC3	7517	mdanderson.org	37	14	104169621	104169621	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001100119	exon7	c.C450A	p.R150R	CTGCAGGCGCTTG		35	3	0.09	26	0	0				19	0	0.00			
TYRO3	7301	mdanderson.org	37	15	41859673	41859673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_006293	exon7	c.G899T	p.C300F	TGCGCTGTGCCAA		46	3	0.07	57	0	0				32	0	0.00			
IL4R	3566	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	27353570	27353570	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_000418	exon4	c.C199T	p.L67L	GTTTTTCTGCTCT		151	8	0.05	113	0	0				22	0	0.00			
RANBP10	57610	broad.mit.edu;bcgsc.ca	37	16	67762301	67762301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	RANBP10	NM_020850	exon11	c.C1466A	p.S489Y	ATGCTGGACTCAT		65	21	0.32	49	1	0.0204081633		56		32	4	0.13			
CRK	1398	mdanderson.org	37	17	1359235	1359235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_005206	exon1	c.C177A	p.H59Q	GATGTAGTGGGAG		47	3	0.06	51	0	0				30	0	0.00			
.	0	broad.mit.edu	37	17	17579770	17579771	+	RNA	DEL	TG	TG	-	rs72152573	alternate_allele	TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	.	.	.	.	CAAGGCTGTGTGT		6	2	0.33	11	0	0				0	0				
SLFN12	55106	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	33749877	33749877	+	Silent	SNP	T	T	C	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	SLFN12	NM_018042	exon2	c.A171G	p.G57G	GATCACTCCCCCT		159	6	0.04	118	0	0		56		2	0	0.00			
NUP85	79902	mdanderson.org	37	17	73208158	73208158	+	Splice_Site	SNP	G	G	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_024844	exon4	c.361+1G>T	.	TTGCAAGTAAGGA		51	3	0.06	31	0	0				0	0				
ESCO1	114799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	19153599	19153600	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	CA	CA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	ESCO1	NM_052911	exon4	c.1206_1207del	p.402_403del	GTGCTGCACAGAG		131	17	0.13	139	0	0		89		13	0	0.00			
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	50278479	50278479	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_005215	exon2	c.C147T	p.A49A	TGATGCCGTCACA		63	12	0.19	94	0	0				6	2	0.33			
PALM3	342979	mdanderson.org	37	19	14168210	14168210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001145028	exon2	c.G79A	p.A27T	GGCGCGCGGCGCG		43	3	0.07	36	0	0				4	0	0.00			
.	0	broad.mit.edu	37	2	38709868	38709868	+	RNA	SNP	T	T	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	.	.	.	.	TGCTGCTGCAGCC		212	5	0.02	186	0	0				3343	0	0.00			
CLASP1	23332	mdanderson.org	37	2	122176293	122176293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	CLASP1,NS,carcinoma,0,2	CLASP1	NM_015282	exon23	c.G2225A	p.R742H	GGGATACGGCTGC		44	3	0.07	32	0	0		0	2	0	0				
SP5	389058	broad.mit.edu;mdanderson.org	37	2	171573375	171573375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	SP5	NM_001003845	exon2	c.C658T	p.P220S	CACGCGCCCCGCT		56	4	0.07	30	0	0		14		7	0	0.00			
HOXD13	3239	mdanderson.org	37	2	176957866	176957866	+	Missense_Mutation	SNP	C	C	T	rs369711414		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_000523	exon1	c.C248T	p.T83M	AGCGCACGGGCTC		38	3	0.08	25	0	0				0	0				
HOXD10	3236	mdanderson.org	37	2	176982179	176982179	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_002148	exon1	c.C618T	p.S206S	CGTGAGCGGCCAG		79	4	0.05	75	0	0				5	0	0.00			
PLCL1	5334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198949565	198949565	+	Missense_Mutation	SNP	G	G	A	rs201197388	bycluster	TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	PLCL1_ENST00000428675,right_upper_lobe,carcinoma,0,2	PLCL1_ENST00000428675	NM_006226	exon2	c.G1324A	p.V442I	CGAAGCGTTGAAC		122	39	0.32	133	0	0	0.001	0	2	5	2	0.40			
ARPC2	10109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219103519	219103519	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_005731	exon5	c.A401C	p.E134A	AAGAAGAGGGCAA		306	89	0.29	233	0	0				809	268	0.33			
TTLL4	9654	broad.mit.edu	37	2	219617499	219617499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	TTLL4	NM_014640	exon17	c.C2990T	p.S997F	ATGCATCTGTGCT		135	4	0.03	121	0	0		96		65	1	0.02			
SPEG	10290	mdanderson.org	37	2	220343903	220343903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_005876	exon23	c.C5065T	p.P1689S	AGGAAACCCACCG		39	3	0.08	32	0	0				15	0	0.00			
PTMA	5757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	232576664	232576664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001099285	exon3	c.A185G	p.E62G	GTGGGGAGGAAGA		82	18	0.22	53	0	0				2865	654	0.23			
UGT1A4	54657	mdanderson.org	37	2	234628241	234628241	+	Missense_Mutation	SNP	G	G	C	rs200363835	bycluster;by1000genomes	TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_007120	exon1	c.G775C	p.G259R	TTCCGAGGGGACT		166	7	0.04	139	1	0.0071942446	0.003			0	0				
SIGLEC1	6614	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3673381	3673381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	SIGLEC1	NM_023068	exon15	c.G3817A	p.E1273K	CACCTTCAGGCAC		36	5	0.14	37	0	0		210		7	0	0.00			
KIF16B	55614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	16385486	16385486	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001199865	exon17	c.C1756T	p.L586L	CAGACAGGTTCTC		74	12	0.16	59	0	0				17	1	0.06			
FRG1B	284802	bcgsc.ca	37	20	29623182	29623182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	FRG1B	.	.	.	.	GCCATTGAAATGG		354	19	0.05	358	15	0.0418994413		181		205	0	0.00			
FRG1B	284802	bcgsc.ca	37	20	29623214	29623214	+	Missense_Mutation	SNP	C	C	T	rs367590609		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	FRG1B	.	.	.	.	TGCACTCGACAAT		381	24	0.06	386	13	0.0336787565		181		177	0	0.00			
NCOA6	23054	hgsc.bcm.edu	37	20	33345756	33345756	+	Silent	SNP	T	T	C	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	NCOA6,bladder,carcinoma,0,2	NCOA6	NM_014071	exon7	c.A795G	p.Q265Q	TTGTTGTTGCTGC		76	4	0.05	76	1	0.0131578947		0	2	26	0	0.00			
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	56137903	56137903	+	Silent	SNP	T	T	C	rs201469307	by1000genomes	TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_002591	exon4	c.T558C	p.D186D	GGGCGATGGGGAG		133	33	0.25	149	0	0	0			0	0				
LRRC3	81543	mdanderson.org	37	21	45876537	45876537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_030891	exon2	c.G10A	p.V4M	GGCACCGTGCGCC		26	2	0.08	15	0	0				8	0	0.00			
PRR14L	253143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32111642	32111642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_173566	exon4	c.C2183T	p.S728L	CAGTTTGAAGAGG		113	47	0.42	149	0	0				7	5	0.71			
FAM19A5	25817	mdanderson.org	37	22	49042516	49042516	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001082967	exon2	c.C220T	p.Q74X	AAGGGGCAGATCG		22	3	0.14	24	0	0				47	0	0.00			
NFKBIZ	64332	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	101572306	101572306	+	Silent	SNP	T	T	C	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	NFKBIZ	NM_031419	exon5	c.T936C	p.P312P	CAGTCCTTTTCCC		138	5	0.04	108	0	0		55		7	0	0.00			
EPHB1	2047	mdanderson.org	37	3	134968244	134968244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	EPHB1_ENST00000398015,face,malignant_melanoma,0,2	EPHB1_ENST00000398015	NM_004441	exon15	c.G2757T	p.W919C	TGACTGGCTCAGC		48	3	0.06	53	0	0		0	2	159	0	0.00			
NELFA	7469	mdanderson.org	37	4	1985675	1985675	+	Missense_Mutation	SNP	G	G	A	rs139794494		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_005663	exon9	c.C1235T	p.P412L	ACAGCCGGAGGTG		35	3	0.09	28	0	0	0			114	0	0.00			
RGS12	6002	mdanderson.org	37	4	3422429	3422429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_002926	exon10	c.C2822T	p.A941V	CCTCTGCGGGGAG		48	3	0.06	39	0	0				55	0	0.00			
GNRHR	2798	mdanderson.org	37	4	68619536	68619536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001012763	exon1	c.C518A	p.P173Q	ACCTGTGGTCCTG		51	3	0.06	63	0	0				0	0				
.	0	bcgsc.ca	37	5	23305133	23305133	+	RNA	SNP	T	T	C	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	.	.	.	.	GTGAAGTCTCCAG		45	5	0.11	49	0	0				0	0				
ARSB	411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78251240	78251240	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_198709	exon5	c.A776G	p.Q259R	TTGTCTTGGATAA		98	39	0.40	146	0	0				25	10	0.40			
POU4F3	5459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145719235	145719235	+	Missense_Mutation	SNP	C	C	A	rs145218099	alternate_allele	TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_002700	exon2	c.C245A	p.T82N	ACCATACCATGAG		68	31	0.46	94	0	0				0	0				
SLIT3	6586	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	168678411	168678411	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	SLIT3	NM_001271946	exon2	c.C250A	p.L84I	TCTTGAGCCCAGC		44	4	0.09	67	0	0		224		1	0	0.00			
HIST1H3G	8355	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26271526	26271526	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	HIST1H3G	NM_003534	exon1	c.C87T	p.S29S	CGGCGCGCTTTTC		86	48	0.56	75	1	0.0133333333		20		4	3	0.75			
TRERF1	55809	mdanderson.org	37	6	42227154	42227154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_033502	exon9	c.G2192A	p.G731D	CCGTGGCCGGAGA		13	2	0.15	11	0	0				6	0	0.00			
MED23	9439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	131931259	131931259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_015979	exon12	c.C1022T	p.S341L	TGACTTGAGAGAT		108	73	0.68	106	0	0				14	9	0.64			
BAZ1B	9031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	72861685	72861685	+	Silent	SNP	A	A	G	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_032408	exon16	c.T3753C	p.S1251S	GTCCTCAGAAGCA		58	25	0.43	87	0	0				72	27	0.38			
PCLO	27445	mdanderson.org	37	7	82583012	82583012	+	Silent	SNP	T	T	G	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_014510	exon5	c.A7257C	p.P2419P	GGGTGGTGGTGGA		12	3	0.25	18	6	0.3333333333				0	0				
NAPEPLD	222236	bcgsc.ca	37	7	102760577	102760577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	NAPEPLD	NM_001122838	exon3	c.C388A	p.L130M	GTCCCAGCCATGT		50	4	0.08	76	0	0		49		12	0	0.00			
NAMPT	10135	broad.mit.edu	37	7	105893479	105893479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	NAMPT	NM_005746	exon10	c.T1349C	p.L450P	TCCTCAAGGTCTC		186	5	0.03	246	0	0		37		68	0	0.00			
OR2A25	392138	bcgsc.ca;mdanderson.org	37	7	143771911	143771911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	OR2A25	NM_001004488	exon1	c.C599T	p.A200V	TTTTGGCAGGGGC		105	5	0.05	127	0	0		66		0	0				
ESYT2	57488	bcgsc.ca	37	7	158552222	158552222	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	ESYT2,colon,carcinoma,-2,1	ESYT2	NM_020728	exon13	c.C1518A	p.S506S	TGCAGAGGAAAGA		48	4	0.08	69	0	0		70	1	44	0	0.00			
LYPLA1	10434	mdanderson.org	37	8	54965242	54965242	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	LYPLA1,colon,carcinoma,0,2	LYPLA1	NM_006330	exon7	c.G435A	p.W145X	TGGAAGCCAGCAA		46	3	0.07	60	0	0		0	2	53	0	0.00			
GSDMD	79792	mdanderson.org	37	8	144644277	144644277	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001166237	exon11	c.G972T	p.L324L	CCAGCTGGCCCTG		18	2	0.11	15	0	0				31	0	0.00			
KIFC2	90990	mdanderson.org	37	8	145692490	145692490	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_145754	exon3	c.C327T	p.G109G	CCTGGGCCAGGTG		31	3	0.10	57	0	0				25	0	0.00			
PPP1R16A	84988	mdanderson.org	37	8	145722649	145722649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_032902	exon1	c.G72T	p.K24N	GCTGAAGCATGCC		36	3	0.08	35	0	0				109	0	0.00			
TAF1L	138474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32632961	32632961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	TAF1L,rectum,carcinoma,0,2	TAF1L	NM_153809	exon1	c.C2617T	p.R873C	CTGTGCGTTTGAA		372	115	0.31	332	0	0		0	2	1	0	0.00			
.	100289027	bcgsc.ca	37	9	45363836	45363836	+	RNA	SNP	G	G	A	rs199519540	bycluster	TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	.	.	.	.	CAGAGCGGAACGC		17	4	0.24	30	0	0				5	0	0.00			
NIPSNAP3A	25934	bcgsc.ca	37	9	107510105	107510105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	NIPSNAP3A	NM_015469	exon1	c.C32T	p.A11V	CTCGGGCGCTGGC		30	4	0.13	37	0	0		18		54	0	0.00			
PIP5KL1	138429	mdanderson.org	37	9	130687406	130687406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001135219	exon9	c.C897A	p.S299R	GATGAGGCTGCTG		46	3	0.07	68	0	0				7	0	0.00			
PIP5KL1	138429	mdanderson.org	37	9	130692148	130692148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_001135219	exon2	c.C47A	p.P16H	GCCTCAGGGGAGG		24	2	0.08	26	0	0				0	0				
NELFB	25920	mdanderson.org	37	9	140150062	140150062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	NM_015456	exon1	c.A101G	p.Q34R	AGTTCCAGGTGGG		43	3	0.07	60	1	0.0166666667				99	0	0.00			
COX3	5742	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	9637	9637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	ENST00000362079	exon1	c.T431C	p.I144T	TATCAATCACCTG		24	11	0.46	38	0	0				0	0				
CYP4F8	11283	hgsc.bcm.edu	37	19	15733939	15733939	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOC-01A-11D-A435-10	TCGA-XE-AAOC-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a95086d9-5cf6-47ea-b486-7459507723c9	aaba5832-4495-4245-a564-32b35dff3387	.	.	.	.	.	.	TACTGCGATCATG		85	4	0.05	83	0	0				0	0				
