Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
CROCC	9696	mdanderson.org	37	1	17294828	17294828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_014675	exon31	c.A4991G	p.E1664G	AGGGGGAGCTGCA		69	4	0.06	84	0	0				38	0	0.00			
PFKP	5214	bcgsc.ca	37	10	3161041	3161041	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	PFKP	NM_002627	exon15	c.C1510T	p.L504L	GCGCTGCTGATCA		73	5	0.07	84	0	0		182		194	0	0.00			
MUC6	4588	bcgsc.ca	37	11	1016822	1016822	+	Silent	SNP	A	A	C	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	MUC6	NM_005961	exon31	c.T5979G	p.T1993T	ATAGGTAGTGGTG		375	16	0.04	523	13	0.0248565966		408		0	0				
OR56B1	387748	mdanderson.org	37	11	5758268	5758268	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001005180	exon1	c.G522T	p.Q174H	AGCACAGCGTGAT		49	3	0.06	80	0	0				0	0				
PAX6	5080	broad.mit.edu	37	11	31816308	31816308	+	Silent	SNP	T	T	C	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	PAX6	NM_001604	exon9	c.A594G	p.G198G	ATTCTCTCCCCCT		102	5	0.05	133	1	0.007518797		75		0	0				
APLNR	187	mdanderson.org	37	11	57004401	57004401	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_005161	exon1	c.C78A	p.S26S	CCCCGAGGATTTC		48	3	0.06	81	0	0				22	0	0.00			
SF1	7536	bcgsc.ca	37	11	64533334	64533334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	SF1	NM_004630	exon13	c.T1876A	p.F626I	TCCCGAAGGGCGG		34	4	0.12	74	0	0		124		201	0	0.00			
INTS4	92105	broad.mit.edu	37	11	77635932	77635932	+	Missense_Mutation	SNP	A	A	C	rs148749715		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	INTS4	NM_033547	exon12	c.T1378G	p.S460A	CTCTGGATGAATC		232	5	0.02	249	0	0		89		32	0	0.00			
ANGPTL5	253935	mdanderson.org	37	11	101775579	101775579	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_178127	exon5	c.G405A	p.L135L	AGGATCCAGCTGT		30	3	0.10	24	0	0				0	0				
TIRAP	114609	mdanderson.org	37	11	126162383	126162383	+	Nonsense_Mutation	SNP	C	C	T	rs202146623	bycluster	TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_148910	exon5	c.C79T	p.Q27X	TTCAGGCAGACCC		42	3	0.07	60	0	0	0.001			3	0	0.00			
GLB1L2	89944	mdanderson.org	37	11	134226237	134226237	+	Nonsense_Mutation	SNP	G	G	T	rs146193618	alternate_allele	TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_138342	exon6	c.G601T	p.E201X	GAGAATGAATATG		33	3	0.09	46	0	0				1	0	0.00			
PCBP2	5094	broad.mit.edu;ucsc.edu	37	12	53865577	53865577	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	PCBP2	NM_005016	exon14	c.T1050G	p.Y350X	TCAATATCTAATC		114	4	0.04	148	0	0		38		2328	444	0.19	rescued with RNA-seq		
DNAH10	196385	mdanderson.org	37	12	124256228	124256228	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_207437	exon3	c.G196T	p.E66X	ATTTCAGAAAAAC		42	3	0.07	63	0	0				0	0				
EP400	57634	hgsc.bcm.edu;mdanderson.org	37	12	132547147	132547147	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_015409	exon47	c.G8235A	p.Q2745Q	GCAGCAGCAGCAA		149	10	0.07	150	0	0				53	0	0.00			
ABHD4	0	bcgsc.ca	37	14	23067200	23067200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	ABHD4	.	.	.	.	GACCTGGCAAGGC		60	4	0.07	37	0	0		30		6	0	0.00			
TMEM30B	161291	mdanderson.org	37	14	61747673	61747673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001017970	exon1	c.T193C	p.Y65H	AGTCGTACTCCAG		13	2	0.15	10	0	0				0	0				
.	283685	bcgsc.ca	37	15	23685625	23685625	+	Missense_Mutation	SNP	T	T	C	rs372736971		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	.	.	.	.	ACATCTTCTCCTC		33	4	0.12	37	1	0.027027027				0	0				
DPP8	54878	mdanderson.org	37	15	65744370	65744370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_197960	exon19	c.G2390A	p.G797D	GGGTGACCCATAT		47	3	0.06	71	0	0				34	0	0.00			
CD276	80381	mdanderson.org	37	15	74000783	74000783	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001024736	exon7	c.G1473T	p.K491N	GAGAAAGATCAAA		42	3	0.07	81	0	0				138	0	0.00			
ABCA3	21	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2358479	2358479	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001089	exon11	c.C1257T	p.A419A	GAGCTGGGCTCCC		61	13	0.21	65	0	0				2	0	0.00			
ZNF785	146540	mdanderson.org	37	16	30594392	30594392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_152458	exon3	c.G707A	p.R236H	CGGAAGCGGCGCC		42	3	0.07	44	0	0				7	0	0.00			
ZNF668	79759	mdanderson.org	37	16	31073545	31073545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001172669	exon4	c.G773A	p.R258H	GATGAGCGGGAGA		52	3	0.06	37	0	0				51	0	0.00			
HSF4	3299	mdanderson.org	37	16	67198821	67198821	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001538	exon3	c.T107C	p.L36P	ACCACCTGATCCG		33	3	0.09	26	0	0				2	0	0.00			
FAM65A	79567	mdanderson.org	37	16	67578273	67578273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001193523	exon15	c.G2732T	p.G911V	GCACGGGGTGTCC		28	3	0.11	40	0	0				43	0	0.00			
ANKRD11	29123	mdanderson.org	37	16	89346815	89346815	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001256182	exon10	c.C6135A	p.P2045P	GGCGGCGGGGACG		21	2	0.10	29	0	0				55	1	0.02			
SPNS2	124976	mdanderson.org	37	17	4439658	4439658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001124758	exon11	c.G1544T	p.G515V	TCCTGGGCGGCAT		35	3	0.09	42	0	0				23	0	0.00			
RARA	0	broad.mit.edu	37	17	38512394	38512394	+	Silent	SNP	T	T	G	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	RARA	NM_000964	exon9	c.T1305G	p.G435G	CGGGGGTGGCCTG		87	11	0.13	86	0	0		52		21	0	0.00			
ITGA3	3675	mdanderson.org	37	17	48157689	48157689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_005501	exon22	c.G2770T	p.V924F	CCCGTTGTCACCA		31	3	0.10	39	0	0				30	0	0.00			
C17orf80	55028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71232215	71232215	+	Silent	SNP	A	A	G	rs372656983	bycluster	TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001100621	exon3	c.A594G	p.Q198Q	TGTACAAACTACC		219	33	0.15	164	0	0				77	27	0.35			
SRP68	6730	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	74046599	74046599	+	Missense_Mutation	SNP	G	G	T	rs148814451	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	SRP68,NS,carcinoma,-1,1	SRP68	NM_014230	exon9	c.C987A	p.S329R	TTCTTCGCTTTCA		63	5	0.08	78	0	0		-1	1	168	0	0.00			
TNRC6C	57690	broad.mit.edu;mdanderson.org	37	17	76047438	76047438	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	TNRC6C	NM_018996	exon4	c.C2295T	p.T765T	CACCACCACTACC		47	3	0.06	37	0	0		173		20	0	0.00			
NDC80	10403	mdanderson.org	37	18	2608749	2608749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_006101	exon15	c.G1608T	p.E536D	CTTGGAGAAACAC		50	3	0.06	56	0	0				109	0	0.00			
ZNF24	7572	mdanderson.org	37	18	32920572	32920572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_006965	exon2	c.C43A	p.P15T	GAGTTGGGATGAT		39	3	0.08	44	0	0				22	0	0.00			
PIGN	23556	mdanderson.org	37	18	59781853	59781853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_176787	exon15	c.C1192A	p.Q398K	TGAACTGTTTGGA		49	3	0.06	51	0	0				20	0	0.00			
NOTCH3	4854	mdanderson.org	37	19	15296450	15296450	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_000435	exon13	c.C1992T	p.S664S	GCATGGGCTGGAA		31	3	0.10	33	0	0				26	0	0.00			
SPRED3	399473	mdanderson.org	37	19	38885395	38885395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001042522	exon4	c.C536T	p.T179M	CGACCACGCCCCC		24	3	0.13	31	0	0				0	0				
GRIK5	2901	mdanderson.org	37	19	42507589	42507589	+	Missense_Mutation	SNP	G	G	T	rs141544447	alternate_allele	TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_002088	exon18	c.C2409A	p.N803K	ACCAATGTTCTCC		51	3	0.06	79	0	0				2	0	0.00			
LIG1	3978	mdanderson.org	37	19	48636349	48636349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_000234	exon18	c.C1615A	p.P539T	TCAGGGGAATCCC		48	3	0.06	73	0	0				143	0	0.00			
USP29	0	broad.mit.edu	37	19	57641367	57641367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	USP29,NS,carcinoma,0,1	USP29	NM_020903	exon4	c.G1324T	p.G442C	GCTTGTGGTCATG		87	3	0.03	107	0	0		186	1	1	0	0.00			
CPSF3	51692	broad.mit.edu	37	2	9568893	9568893	+	Splice_Site	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	CPSF3	NM_016207	exon2	c.51-1G>T	.	TTTACAGTGGAGC		228	5	0.02	274	0	0		63		0	0				
ASXL2	55252	mdanderson.org	37	2	25994311	25994311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_018263	exon5	c.C502A	p.Q168K	TTACCTGCTTTAG		130	5	0.04	126	0	0				8	0	0.00			
THADA	63892	broad.mit.edu	37	2	43793648	43793648	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	THADA	.	.	.	.	ATGAAAAGGGAGA		197	4	0.02	188	0	0		131		0	0				
CCT4	10575	mdanderson.org	37	2	62110604	62110604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_006430	exon3	c.C260A	p.A87E	CTGGCTGCTGGAT		29	2	0.07	34	0	0				524	0	0.00			
LOC150776	0	broad.mit.edu	37	2	132277686	132277686	+	RNA	SNP	C	C	T	rs9287520	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	.	.	.	.	AGATGGCGGCTCT		53	4	0.08	87	0	0				142	0	0.00			
FAM182B	728882	mdanderson.org	37	20	25755549	25755549	+	RNA	SNP	C	C	A	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	FAM182B,colon,carcinoma,0,1	FAM182B	.	.	.	.	CTGCAGCCTTCCT		44	3	0.07	59	0	0		0	1	3	0	0.00			
C20orf203	284805	broad.mit.edu	37	20	31238232	31238232	+	RNA	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	.	.	.	.	GGGCTCGGCTAAT		81	3	0.04	85	0	0				0	0				
OGFR	11054	mdanderson.org	37	20	61444930	61444930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_007346	exon7	c.G1963T	p.A655S	GAGCCAGCCAAGG		43	3	0.07	70	0	0				229	0	0.00			
OLIG2	10215	mdanderson.org	37	21	34399701	34399701	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_005806	exon2	c.C531T	p.Y177Y	GATCTACGGGGGC		39	3	0.08	35	0	0				0	0				
KCNJ6	3763	bcgsc.ca	37	21	39087331	39087331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	KCNJ6	NM_002240	exon3	c.C129A	p.H43Q	GCTGATGTGTCTT		128	6	0.05	196	0	0		58		0	0				
.	0	bcgsc.ca	37	22	47859107	47859107	+	Silent	SNP	T	T	C	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	.	.	.	.	TGCTCCTTTTTTG		72	4	0.06	82	0	0				0	0				
QARS	5859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49139869	49139869	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_005051	exon6	c.C553T	p.L185L	TCTCCAGATCAGC		91	10	0.11	144	0	0				350	115	0.33			
IFRD2	7866	mdanderson.org	37	3	50329785	50329785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_006764	exon1	c.G113A	p.R38H	CCGGTGCGCTGCG		22	2	0.09	23	0	0				13	0	0.00			
PCGF3	10336	mdanderson.org	37	4	727493	727493	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_006315	exon4	c.G24T	p.L8L	CAAGCTGTGGGAC		39	3	0.08	40	0	0				62	0	0.00			
FGFRL1	53834	mdanderson.org	37	4	1016154	1016154	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001004356	exon3	c.G243A	p.P81P	GCTGCCGCAGGGG		34	3	0.09	39	0	0				20	0	0.00			
CLCN3	0	broad.mit.edu	37	4	170618538	170618538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	CLCN3	NM_001829	exon9	c.T1216C	p.F406L	GGAGCCTTTTTCA		170	4	0.02	203	2	0.0098522167		85		9	0	0.00			
CTNND2	1501	mdanderson.org	37	5	11385032	11385032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001332	exon7	c.G922A	p.A308T	ACTTGGCCAGGCG		27	3	0.11	15	0	0				0	0				
FEM1C	56929	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	5	114860823	114860823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	FEM1C,NS,carcinoma,0,1	FEM1C	NM_020177	exon3	c.G1036A	p.A346T	AGACAGCGCCTCT		54	4	0.07	72	0	0		0	1	8	0	0.00			
EBF1	1879	mdanderson.org	37	5	158135162	158135162	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_024007	exon15	c.C1569A	p.T523T	GGCCATGGTGGGG		48	3	0.06	66	0	0				3	0	0.00			
TXNDC5	81567	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	7883446	7883446	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_030810	exon10	c.G1230A	p.E410E	ACTGTGCTCACTG		98	5	0.05	81	0	0				639	14	0.02			
ID4	3400	mdanderson.org	37	6	19838202	19838202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001546	exon1	c.A217G	p.S73G	TGCTATAGCCGCC		61	3	0.05	67	0	0				33	0	0.00			
MDN1	23195	mdanderson.org	37	6	90529232	90529232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_014611	exon1	c.C95A	p.A32D	TGCTTGGCCAAGA		56	3	0.05	73	0	0				1	0	0.00			
SYNE1	23345	broad.mit.edu;mdanderson.org	37	6	152469314	152469314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	SYNE1	NM_182961	exon137	c.T24842C	p.I8281T	AGGGGGATGGAGT		85	4	0.05	94	0	0		3227		23	0	0.00			
SLC22A1	6580	mdanderson.org	37	6	160564645	160564645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_153187	exon8	c.G1349T	p.C450F	TGATCTGCCTGGT		45	3	0.07	75	0	0				2	0	0.00			
ZNF425	155054	broad.mit.edu;mdanderson.org	37	7	148801463	148801463	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	ZNF425	NM_001001661	exon4	c.C1500A	p.C500X	CTCGCCGCAGGGA		34	3	0.09	47	0	0		99		1	0	0.00			
AZIN1	51582	ucsc.edu	37	8	103841637	103841637	+	Silent	SNP	T	T	C	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	AZIN1	NM_015878	exon12	c.A1098G	p.E366E	ACAGCTTTCCACA		135	1	0.01	165	0	0		26		407	63	0.15			
PSCA	8000	mdanderson.org	37	8	143763491	143763491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_005672	exon3	c.G286A	p.A96T	GCTGCTGCCATCC		22	3	0.14	32	0	0				0	0				
PLEC	5339	mdanderson.org	37	8	145007483	145007483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_201380	exon13	c.C1711T	p.R571W	CCGCCCGCTGTGG		35	3	0.09	42	0	0				27	0	0.00			
NOTCH1	4851	mdanderson.org	37	9	139407986	139407986	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_017617	exon14	c.C2211A	p.Y737X	GCACTTGTACCTG		38	3	0.08	51	0	0				15	0	0.00			
ABCA2	20	mdanderson.org	37	9	139907513	139907513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_212533	exon30	c.C4898T	p.A1633V	GGGGACGCTGGCG		20	2	0.10	23	0	0				8	0	0.00			
CXorf38	159013	mdanderson.org	37	X	40489933	40489933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_144970	exon6	c.C894A	p.S298R	ACAGAGGCTGTCT		48	3	0.06	63	0	0				44	0	0.00			
.	0	bcgsc.ca	37	X	43267493	43267494	+	RNA	DNP	TG	TG	CT	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	TG	TG					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	.	.	.	.	CACAGCTGGGTGG		17	4	0.24	18	0	0				0	0				
OGT	8473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70793562	70793562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_181672	exon22	c.A3059G	p.Y1020C	GGCTCTATCTACA		69	13	0.19	85	0	0				351	100	0.28			
GPRASP2	114928	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	X	101971349	101971349	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_138437	exon4	c.G1552T	p.E518X	ATTCCCGAAGAGG		88	4	0.05	105	0	0				16	0	0.00			
SLC25A5	292	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118602491	118602491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001152	exon1	c.G13A	p.A5T	GATGCCGCTGTGT		168	26	0.15	176	0	0				559	220	0.39			
GLUD2	2747	mdanderson.org	37	X	120182071	120182071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_012084	exon1	c.C533A	p.P178Q	ATGTGCCGTTTGG		55	3	0.05	46	0	0				89	0	0.00			
THOC2	57187	mdanderson.org	37	X	122747911	122747911	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_001081550	exon34	c.C4441A	p.R1481R	TTTTCCGCTCTTT		17	2	0.12	25	0	0				151	0	0.00			
XPNPEP2	7512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	128886308	128886308	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_003399	exon10	c.A1004G	p.E335G	TCTATGAAATGAT		113	21	0.19	112	0	0				0	0				
NLGN4Y	22829	mdanderson.org	37	Y	16953087	16953087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOD-01A-11D-A435-10	TCGA-XE-AAOD-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2a0bdd28-8993-44f4-a117-65ff51ff02c6	dc69fa13-f07c-4903-a807-b0a0e9d277ad	.	.	NM_014893	exon6	c.G2396T	p.S799I	CCTTCAGTGGAGG		46	3	0.07	106	0	0				1	0	0.00			
