Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
CEP104	9731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	3740039	3740039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	CEP104,NS,carcinoma,+1,1	CEP104	NM_014704	exon19	c.G2452A	p.A818T	AAACAGCCTCACT		100	12	0.12	126	1	0.0079365079		1	1	21	4	0.19			
CROCC	9696	broad.mit.edu;mdanderson.org	37	1	17250898	17250898	+	Missense_Mutation	SNP	G	G	T	rs146983726	bycluster;byfrequency;alternate_allele	TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	CROCC,NS,carcinoma,+1,1	CROCC	NM_014675	exon3	c.G275T	p.R92L	TGTCCCGCGTGGA		74	4	0.05	60	0	0		185	1	5	0	0.00			
C1QC	714	mdanderson.org	37	1	22973860	22973860	+	Missense_Mutation	SNP	C	C	T	rs139780188		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001114101	exon3	c.C322T	p.P108S	GGAGAGCCAGGTG		40	3	0.08	77	0	0	0			740	0	0.00			
BAI2	576	broad.mit.edu	37	1	32221746	32221746	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	BAI2,NS,carcinoma,0,1	BAI2	NM_001703	exon4	c.C692G	p.A231G	GAGCCGGCCCCCG		54	15	0.28	49	17	0.3469387755		128	1	0	0				
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39818746	39818746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_012090	exon40	c.C5081T	p.S1694L	TAACTTCAGTAGG		84	9	0.11	98	0	0				6	1	0.17			
ZMPSTE24	10269	mdanderson.org	37	1	40747141	40747141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_005857	exon7	c.G896T	p.G299V	ATTCTGGCATGGA		119	5	0.04	133	0	0				26	0	0.00			
CYP2J2	1573	mdanderson.org	37	1	60370571	60370571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_000775	exon7	c.C1163A	p.T388N	AAAGTGGTATCAA		38	3	0.08	61	0	0				3	0	0.00			
AP4B1-AS1	100287722	hgsc.bcm.edu	37	1	114423856	114423856	+	RNA	SNP	T	T	C	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	.	.	.	.	AGGAAATGTAGCT		93	15	0.16	93	0	0				0	0				
NRAS	4893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	G	T	rs121913254	bycluster	TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	NRAS,NS,haematopoietic_neoplasm,0,2068	NRAS	NM_002524	exon3	c.C181A	p.Q61K	CTTCTTGTCCAGC		102	17	0.17	85	0	0		0	2068	18	4	0.22			
LOC645166	645166	ucsc.edu	37	1	148933289	148933289	+	Splice_Site	SNP	A	A	G	rs9729175	bycluster;byfrequency;by2hit2allele	TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NR_027355	exon3	c.236-2A>G	.	GCCCGCAGGATAT		66	12	0.18	75	5	0.0666666667				1	0	0.00			
TCHH	7062	broad.mit.edu	37	1	152082220	152082220	+	Missense_Mutation	SNP	G	G	T	rs113946258	bycluster;byfrequency;alternate_allele	TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	TCHH	NM_007113	exon3	c.C3473A	p.P1158Q	TTCTCCGGTTCCT		92	3	0.03	80	0	0		275		1	0	0.00			
FLG	2312	mdanderson.org	37	1	152276368	152276368	+	Missense_Mutation	SNP	C	C	G	rs201216189		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	FLG,NS,carcinoma,0,1	FLG	NM_002016	exon3	c.G10994C	p.S3665T	CTGTCACTGGCCT		119	4	0.03	92	0	0		0	1	7	0	0.00			
FLG	2312	mdanderson.org	37	1	152276386	152276386	+	Missense_Mutation	SNP	G	G	T	rs199655799	bycluster	TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	FLG,NS,carcinoma,-1,1	FLG	NM_002016	exon3	c.C10976A	p.S3659Y	CCACTGGACCCTC		106	4	0.04	85	0	0		-1	1	11	0	0.00			
CR1	1378	mdanderson.org	37	1	207782931	207782931	+	Missense_Mutation	SNP	A	A	T	rs6691117	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_000651	exon37	c.A6193T	p.I2065F	GAGATCATCAGAT		112	3	0.03	103	0	0				8	0	0.00			
LBR	3930	broad.mit.edu	37	1	225592129	225592129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	LBR	NM_194442	exon13	c.C1664A	p.A555D	GCCAAGGCCATGA		170	6	0.04	136	0	0		54		59	0	0.00			
WAPAL	23063	mdanderson.org	37	10	88206160	88206160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_015045	exon16	c.C3161A	p.T1054K	TCATCTGTTTTAC		71	4	0.06	69	0	0				42	0	0.00			
MINPP1	9562	mdanderson.org	37	10	89265232	89265232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001178117	exon1	c.G560T	p.C187F	ACCGCTGCATGGA		38	3	0.08	53	0	0				8	0	0.00			
WBP1L	54838	mdanderson.org	37	10	104572753	104572753	+	Missense_Mutation	SNP	G	G	A	rs201591380	by1000genomes	TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	C10orf26,NS,carcinoma,0,1	C10orf26	NM_001083913	exon4	c.G757A	p.A253T	CACGGCGCACCCG		35	3	0.09	46	0	0	0	0	1	14	0	0.00			
MICALCL	84953	mdanderson.org	37	11	12316251	12316251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_032867	exon3	c.G1273T	p.G425C	CTCTTTGGCAGCC		34	3	0.09	51	0	0				0	0				
SLC39A13	91252	mdanderson.org	37	11	47436633	47436633	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001128225	exon9	c.G963T	p.L321L	GGTCCTGCCCTTC		48	3	0.06	50	0	0				26	0	0.00			
POLR2G	5436	mdanderson.org	37	11	62529311	62529311	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_002696	exon2	c.C57T	p.G19G	CTTCGGCCCCAAC		34	3	0.09	45	0	0				77	0	0.00			
TSGA10IP	254187	broad.mit.edu	37	11	65715786	65715787	+	RNA	INS	-	-	CCAC	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	TSGA10IP	.	.	.	.	CATCCATCCACCC		10	8	0.80	11	0	0		31		0	0				
ARAP1	116985	mdanderson.org	37	11	72406494	72406494	+	Missense_Mutation	SNP	C	C	T	rs375239868		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001040118	exon26	c.G3514A	p.G1172S	AGTCACCGGCATG		52	3	0.06	65	0	0				43	0	0.00			
HEPHL1	341208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	93796882	93796882	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	HEPHL1	NM_001098672	exon3	c.623delA	p.K208fs	CTGCAAGGAAGGT		61	15	0.25	75	0	0		144		0	0				
ARHGAP20	57569	broad.mit.edu	37	11	110451483	110451483	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	ARHGAP20	NM_020809	exon16	c.C2187A	p.S729S	ACAGCTGGACTTG		89	3	0.03	104	0	0		150		1	0	0.00			
CHD4	1108	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	6707254	6707254	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001273	exon12	c.C1698G	p.H566Q	CTGACAGTGCAGC		95	4	0.04	102	0	0				76	16	0.21			
RBP5	0	broad.mit.edu	37	12	7281645	7281674	+	RNA	DEL	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	-	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	TTCCTGAGGAAGGAACCTGGAGCAGGATCC	TTCCTGAGGAAGGAACCTGGAGCAGGATCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	RBP5	.	.	.	.	TGGCTTTTCCTGA		11	4	0.36	4	0	0		20		4	0	0.00			
PLXNC1	10154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	94631464	94631464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_005761	exon10	c.C2005T	p.P669S	ATTGAGCCACAGA		61	11	0.18	65	0	0				0	0				
ABCB9	23457	mdanderson.org	37	12	123425487	123425487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001243014	exon8	c.T1436C	p.V479A	TCGAACACCTTCT		58	4	0.07	66	0	0				3	0	0.00			
CATSPERB	79820	mdanderson.org	37	14	92191427	92191427	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_024764	exon3	c.C165A	p.N55K	TACCAAGTTTTCT		31	3	0.10	35	0	0				0	0				
BCL11B	64919	hgsc.bcm.edu	37	14	99641568	99641568	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	BCL11B,colon,carcinoma,0,1	BCL11B	NM_138576	exon4	c.G1605C	p.E535D	CTCCTCCTCGTCC		16	2	0.13	10	0	0		0	1	0	0				
BEGAIN	57596	mdanderson.org	37	14	101005030	101005030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_020836	exon7	c.C1058T	p.T353M	GCGGCCGTGGCCT		39	3	0.08	25	0	0				0	0				
THBS1	7057	mdanderson.org	37	15	39881513	39881513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_003246	exon12	c.G1884T	p.Q628H	CTCACAGCCCTTC		39	3	0.08	45	0	0				6	0	0.00			
LRRC57	255252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42839488	42839488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_153260	exon4	c.G463A	p.V155I	CGATGACTTGCAG		47	8	0.17	53	0	0				38	11	0.29			
DUOX2	50506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45399065	45399065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	DUOX2,colon,carcinoma,-1,1	DUOX2	NM_014080	exon15	c.C1796T	p.A599V	GTGATGGCAAAAC		128	26	0.20	113	0	0		-1	1	0	0				
GOLGA6B	55889	mdanderson.org	37	15	72953691	72953691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	GOLGA6B,NS,carcinoma,+2,1	GOLGA6B	NM_018652	exon8	c.G651T	p.Q217H	GACACAGGTGAGG		43	3	0.07	37	0	0		2	1	2	0	0.00			
MAN2A2	4122	hgsc.bcm.edu;mdanderson.org	37	15	91455346	91455346	+	Missense_Mutation	SNP	G	G	A	rs146996561		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_006122	exon14	c.G2183A	p.R728H	GGCACCGCACGCT		53	4	0.08	73	0	0	0			11	0	0.00			
MKL2	57496	mdanderson.org	37	16	14340783	14340783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_014048	exon12	c.A1666G	p.T556A	AGTCCCACCAGCA		43	3	0.07	46	0	0				4	0	0.00			
NUP88	4927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	5308484	5308484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_002532	exon6	c.G937A	p.A313T	GTACAGCACACGC		65	8	0.12	67	0	0				38	9	0.24			
KRTAP1-1	81851	hgsc.bcm.edu;broad.mit.edu	37	17	39197304	39197304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	KRTAP1-1,NS,malignant_melanoma,0,1	KRTAP1-1	NM_030967	exon1	c.A346G	p.I116V	ACCTGATACGGGT		73	3	0.04	79	1	0.0126582278		0	1	0	0				
STAT3	6774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40500474	40500474	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_003150	exon2	c.C61G	p.L21V	TGTAGAGCTGATG		52	7	0.13	63	0	0				17	1	0.06			
CUEDC1	404093	mdanderson.org	37	17	55962728	55962728	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001271875	exon2	c.C198A	p.I66I	GCATTCGATGATG		22	2	0.09	25	0	0				0	0				
CSNK1G2-AS1	255193	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	19	1953897	1953897	+	RNA	SNP	G	G	A	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	.	.	.	.	CTCAGAGGCCGGC		61	6	0.10	48	0	0				0	0				
SF3A2	8175	mdanderson.org	37	19	2248153	2248153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_007165	exon9	c.G1003A	p.G335R	GCTCCTGGAGTCC		18	2	0.11	20	0	0				301	0	0.00			
SLC5A5	6528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17988612	17988612	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_000453	exon6	c.G779C	p.G260A	TGTATGGCGTGAA		100	22	0.22	97	0	0				4	2	0.50			
CAPNS1	826	broad.mit.edu	37	19	36631958	36631958	+	Silent	SNP	C	C	G	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	CAPNS1	NM_001749	exon2	c.C45G	p.G15G	CGGCGGCGGGGGA		73	4	0.05	67	0	0		19		4	0	0.00			
STRN	6801	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	37094974	37094974	+	Silent	SNP	A	A	G	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	STRN,extremity,malignant_melanoma,0,1	STRN	NM_003162	exon12	c.T1530C	p.Y510Y	GAATGTATAGATA		23	4	0.17	28	0	0		0	1	5	0	0.00			
MTA3	57504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	42836672	42836672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_020744	exon4	c.A265G	p.R89G	AAACATAGGGAAC		128	13	0.10	156	0	0				69	23	0.33			
USP34	9736	mdanderson.org	37	2	61575520	61575520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_014709	exon15	c.C1770A	p.S590R	CTCATTGCTAGAT		67	4	0.06	38	0	0				5	0	0.00			
SFXN5	94097	hgsc.bcm.edu;mdanderson.org	37	2	73215427	73215427	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_144579	exon10	c.C585A	p.T195T	AAGGCGGGTGGCT		83	4	0.05	88	0	0				5	0	0.00			
ATF2	1386	broad.mit.edu	37	2	175979466	175979466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	ATF2	NM_001880	exon8	c.C578A	p.T193N	CTTGAGGTTGGTG		160	4	0.03	90	0	0		52		25	0	0.00			
FZD5	7855	mdanderson.org	37	2	208632213	208632213	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_003468	exon2	c.C1251A	p.L417L	CAGGAAGAGCGTG		30	3	0.10	36	0	0				6	0	0.00			
ACADL	33	mdanderson.org	37	2	211068162	211068162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001608	exon8	c.C877A	p.L293M	TTAACAGCCTTTC		45	3	0.07	54	0	0				0	0				
GIGYF2	26058	mdanderson.org	37	2	233677194	233677194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001103147	exon20	c.G2163T	p.Q721H	TTCACAGCCTACA		47	3	0.06	43	0	0				39	0	0.00			
TMX4	56255	mdanderson.org	37	20	8000229	8000229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_021156	exon1	c.C32A	p.T11K	AGCGCCGTTAGCT		22	3	0.14	13	0	0				3	0	0.00			
PIGT	51604	mdanderson.org	37	20	44045270	44045270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001184729	exon2	c.C301T	p.P101S	TGGGGGCCACCCT		49	3	0.06	59	0	0				58	0	0.00			
TNFRSF6B	8771	mdanderson.org	37	20	62328829	62328829	+	Silent	SNP	C	C	T	rs1291205	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	TNFRSF6B,caecum,carcinoma,0,1	TNFRSF6B	NM_003823	exon2	c.C573T	p.T191T	TGACACCCTGTGC		59	3	0.05	59	0	0		0	1	36	0	0.00			
SON	6651	hgsc.bcm.edu	37	21	34927489	34927489	+	Silent	SNP	G	G	C	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	SON_ENST00000300278,NS,carcinoma,0,2	SON_ENST00000300278	NM_032195	exon3	c.G5952C	p.R1984R	CCGCCGGAGCCGC		12	3	0.25	11	0	0		0	2	53	0	0.00			
MCM3AP	8888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47700450	47700450	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_003906	exon3	c.C1483G	p.H495D	CTTTATGCAAACT		441	51	0.12	339	0	0				6	1	0.17			
MIF	4282	mdanderson.org	37	22	24237063	24237063	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_002415	exon2	c.G213T	p.A71A	CGGCGCGCAGAAC		15	2	0.13	9	0	0				1519	0	0.00			
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	52537884	52537884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_015136	exon9	c.G988T	p.A330S	CGGTCTGCCACTT		76	5	0.07	95	0	0				0	0				
KCNAB1	7881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	156232196	156232196	+	Silent	SNP	G	G	A	rs370190413		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	KCNAB1_ENST00000471742,colon,carcinoma,+1,2	KCNAB1_ENST00000471742	NM_172160	exon9	c.G702A	p.A234A	CATGGCGATGTAC		80	11	0.14	83	0	0		1	2	0	0				
SDHAP1	0	broad.mit.edu	37	3	195698636	195698648	+	RNA	DEL	GCCTGTAATCCCA	GCCTGTAATCCCA	-	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	GCCTGTAATCCCA	GCCTGTAATCCCA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	.	.	.	.	GCTCACGCCTGTA		7	3	0.43	5	0	0				0	0				
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55599320	55599320	+	Missense_Mutation	SNP	G	G	C	rs121913506	bycluster	TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446C	p.D816H	GCCAGAGACATCA		60	26	0.43	61	0	0		0	932	68	49	0.72			
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	137729063	137729063	+	Splice_Site	SNP	T	T	C	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_016604	exon9	c.2831+2T>C	.	CGGAGGTACCCAA		95	20	0.21	107	0	0				109	109	1.00			
PCDHB14	56122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140605294	140605294	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_018934	exon1	c.G2217A	p.V739V	GGACGTGAGCGGC		73	18	0.25	100	0	0				1	0	0.00			
TAF7	6879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140699523	140699523	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_005642	exon1	c.G89C	p.R30T	ACTGCCCTTCTCA		114	35	0.31	114	0	0				259	154	0.59			
CSNK1A1	1452	mdanderson.org	37	5	148929653	148929653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	CSNK1A1_ENST00000515768,colon,carcinoma,+1,2	CSNK1A1_ENST00000515768	NM_001025105	exon2	c.G215A	p.G72D	GGGATGCCAACCC		47	3	0.06	65	0	0		1	2	49	0	0.00			
JARID2	3720	mdanderson.org	37	6	15496957	15496957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	JARID2,NS,carcinoma,-1,1	JARID2	NM_004973	exon7	c.C1501T	p.R501W	CCGAAGCGGGCCA		42	3	0.07	59	0	0		-1	1	29	0	0.00			
UBR2	23304	broad.mit.edu	37	6	42633186	42633186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	UBR2	NM_015255	exon33	c.G3738T	p.W1246C	TCAGTGGATTAGA		181	4	0.02	160	0	0		134		14	0	0.00			
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	145095443	145095443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	UTRN,NS,carcinoma,0,1	UTRN	NM_007124	exon59	c.C8575T	p.R2859C	AATGTACGTTTTT		147	19	0.13	122	0	0		0	1	23	5	0.22			
HDAC9	9734	mdanderson.org	37	7	18875602	18875602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_178425	exon20	c.A2666G	p.E889G	ATGTTGAGTACCT		48	3	0.06	58	0	0				0	0				
SCARA3	51435	ucsc.edu	37	8	27509049	27509049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	SCARA3,colon,carcinoma,0,1	SCARA3	NM_182826	exon3	c.G131T	p.R44L	GCAGCCGCTGCCA		43	4	0.09	27	0	0		93	1	3	0	0.00			
ZFAT	57623	hgsc.bcm.edu;broad.mit.edu	37	8	135615099	135615099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	ZFAT_ENST00000377838,NS,carcinoma,0,2	ZFAT_ENST00000377838	NM_020863	exon6	c.C863A	p.A288D	AGGTGGGCCTGCA		146	6	0.04	118	1	0.0084745763		0	2	3	0	0.00			
GNAQ	2776	mdanderson.org	37	9	80646047	80646047	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_002072	exon1	c.C105T	p.D35D	GCGGGCGTCCCGC		44	4	0.09	33	1	0.0303030303				14	0	0.00			
MURC	347273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	103340547	103340547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001018116	exon1	c.C122A	p.A41D	AAGTAGCCTCCAT		81	10	0.12	93	0	0				2	0	0.00			
C9orf96	169436	mdanderson.org	37	9	136265624	136265624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_153710	exon12	c.G1165T	p.A389S	CTGTGTGCCTGCT		11	2	0.18	18	0	0				0	0				
ADAMTS13	11093	mdanderson.org	37	9	136302973	136302973	+	Missense_Mutation	SNP	C	C	G	rs370215524	alternate_allele	TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_139025	exon13	c.C1540G	p.R514G	GGCCCCCGGGAGG		42	3	0.07	67	0	0				0	0				
GDPD2	54857	mdanderson.org	37	X	69647059	69647059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	.	NM_001171192	exon9	c.G775T	p.V259L	ACTGATGTGATGG		44	3	0.07	35	0	0				46	0	0.00			
COL4A6	1288	broad.mit.edu	37	X	107430450	107430450	+	Silent	SNP	T	T	C	novel		TCGA-XE-AAOF-01A-11D-A435-10	TCGA-XE-AAOF-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d2135c99-4713-45f2-a010-698436b06fd4	38ca9ea0-821a-4a17-bb22-6e3b0e5743c0	.	COL4A6	NM_001847	exon23	c.A1830G	p.K610K	ATGGCCTTTTTCA		86	3	0.03	84	0	0		270		3	0	0.00			
