Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
AGRN	375790	mdanderson.org	37	1	979025	979025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_198576	exon9	c.G1711T	p.G571W	TCCGACGGGCACA		17	2	0.12	23	0	0				27	0	0.00			
SRRM1	10250	broad.mit.edu	37	1	24996016	24996016	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	SRRM1	NM_005839	exon14	c.G2142A	p.P714P	GTCCCCGTCTCCA		233	6	0.03	201	0	0		81		104	3	0.03			
SCMH1	22955	mdanderson.org	37	1	41514364	41514364	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001172219	exon11	c.C1304A	p.S435X	TTACCTGAGATAA		48	3	0.06	37	0	0				47	0	0.00			
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	62979205	62979205	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001271999	exon33	c.G4192T	p.E1398X	TAGCTTCTTCAAG		113	33	0.29	126	0	0				12	4	0.33			
LRRC7	57554	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	70504317	70504317	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	LRRC7	NM_020794	exon19	c.2695delT	p.S899fs	ATGATTCCAATCC		147	49	0.33	139	0	0		400		2	0	0.00			
SEC22B	9554	broad.mit.edu	37	1	145109312	145109313	+	RNA	INS	-	-	A	rs142440425	bycluster	TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	.	.	.	.	CAAAAACAAAAAA		24	6	0.25	16	0	0				0	0				
HAPLN2	60484	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156595122	156595122	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_021817	exon7	c.C969T	p.G323G	TTTCGGCTTCCCC		111	43	0.39	116	0	0				0	0				
.	0	broad.mit.edu	37	10	5325578	5325578	+	RNA	DEL	C	C	-	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	.	.	.	.	GTCAAACAACTGC		10	5	0.50	7	0	0				0	0				
ANKRD30A	91074	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	37442535	37442535	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	ANKRD30A	NM_052997	exon13	c.T1575G	p.C525W	TGTGTGTTTACCC		531	34	0.06	576	1	0.0017361111		448		0	0				
PCDH15	65217	mdanderson.org	37	10	56129034	56129034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001142763	exon6	c.C335A	p.P112Q	ATCGGTGGCTGCA		25	3	0.12	36	0	0				0	0				
FFAR4	338557	mdanderson.org	37	10	95326948	95326948	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001195755	exon1	c.G471A	p.V157V	GGCAGTGCTGCTG		25	3	0.12	26	0	0				0	0				
UBTD1	80019	mdanderson.org	37	10	99330066	99330066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_024954	exon3	c.C470T	p.T157M	TGTCCACGGGCAA		46	3	0.07	27	0	0				27	0	0.00			
OR5L1	219437	hgsc.bcm.edu	37	11	55579329	55579330	+	Silent	DNP	TT	TT	CC	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	TT	TT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	OR5L1,NS,carcinoma,-1,1	OR5L1	NM_001004738	exon1	c.T388C	p.N128N	TAACCCTTTGCTA		100	5	0.05	74	0	0	0	-1	1	0	0				
CLP1	10978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	57427264	57427264	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001142597	exon2	c.C316T	p.Q106X	CGGAGGCAAGCGG		101	29	0.29	94	0	0				15	0	0.00			
OR1S2	219958	hgsc.bcm.edu	37	11	57970760	57970760	+	Missense_Mutation	SNP	C	C	T	rs200054918		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	OR1S2,NS,carcinoma,0,3	OR1S2	NM_001004459	exon1	c.G894A	p.M298I	GGGGTTCATCATG		96	5	0.05	79	2	0.0253164557		0	3	0	0				
VEGFB	7423	mdanderson.org	37	11	64003785	64003785	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001243733	exon4	c.C360T	p.S120S	ACACAGCCAGTGT		37	3	0.08	35	0	0				150	0	0.00			
PLCB3	5331	mdanderson.org	37	11	64034987	64034987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_000932	exon31	c.G3664T	p.G1222C	CTGTCGGGCGCTG		19	2	0.11	14	0	0				93	0	0.00			
UNC93B1	81622	broad.mit.edu;mdanderson.org	37	11	67763107	67763107	+	Silent	SNP	A	A	G	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	.	.	.	.	CAGGGCACTGCCC		80	8	0.10	60	0	0				43	0	0.00			
NADSYN1	55191	mdanderson.org	37	11	71192991	71192991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_018161	exon13	c.G1070T	p.S357I	CCTTGAGTGGCGG		45	3	0.07	41	0	0				29	0	0.00			
NCAPD2	9918	broad.mit.edu	37	12	6637351	6637351	+	Silent	SNP	C	C	T	rs376232892		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	NCAPD2	NM_014865	exon25	c.C3156T	p.C1052C	TTTCTGCGACTCC		613	9	0.01	154	0	0		99		404	0	0.00			
A2M	2	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	9258885	9258885	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_000014	exon10	c.T1051G	p.S351A	CAAATGAGAGTTT		292	19	0.07	118	0	0				77	3	0.04			
PRR4	11272	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	10999711	10999711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_007244	exon3	c.T356C	p.F119S	CTCTGGAAGAATG		276	28	0.10	100	0	0				54	4	0.07			
ATP7B	540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	52518252	52518252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_000053	exon14	c.G3236A	p.C1079Y	TCTTTACAGTATT		35	22	0.63	58	0	0				4	0	0.00			
IPO5	3843	ucsc.edu;bcgsc.ca	37	13	98669019	98669019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	IPO5	NM_002271	exon25	c.G2584T	p.D862Y	GTGTCAGATATTT		44	4	0.09	79	0	0		90		91	0	0.00			
EML5	161436	broad.mit.edu	37	14	89093274	89093274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	EML5	NM_183387	exon34	c.C4648A	p.L1550M	CTGCCAGGGTCCA		224	6	0.03	140	0	0		141		2	0	0.00			
.	0	bcgsc.ca	37	15	30517228	30517228	+	RNA	SNP	C	C	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	.	.	.	.	GGTCAGCGCCTGG		21	4	0.19	27	0	0				1	0	0.00			
FAM98B	283742	hgsc.bcm.edu	37	15	38776833	38776833	+	Silent	SNP	T	T	A	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	FAM98B_ENST00000397609,NS,carcinoma,0,2	FAM98B_ENST00000397609	NM_173611	exon8	c.T1275A	p.G425G	TGGTGGTGGAGGA		76	4	0.05	82	1	0.012195122		0	2	0	0				
DISP2	85455	broad.mit.edu;ucsc.edu;mdanderson.org	37	15	40660083	40660083	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	DISP2	NM_033510	exon8	c.C1770T	p.G590G	CTTCGGCTACCTG		13	4	0.31	10	0	0		86		0	0				
UNC13C	440279	bcgsc.ca;mdanderson.org	37	15	54592474	54592474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	UNC13C	NM_001080534	exon11	c.G4171T	p.D1391Y	AAAGGGGATGAAG		85	5	0.06	99	0	0		674		1	0	0.00			
UBALD1	124402	mdanderson.org	37	16	4659951	4659951	+	Missense_Mutation	SNP	G	G	T	rs112538377	bycluster;alternate_allele	TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	FAM100A,NS,haematopoietic_neoplasm,0,1	FAM100A	NM_145253	exon3	c.C217A	p.P73T	AGTTGGGGGGTGT		33	3	0.09	49	0	0		0	1	27	0	0.00			
ATP2C2	9914	mdanderson.org	37	16	84402237	84402237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	ATP2C2,colon,carcinoma,0,1	ATP2C2	NM_014861	exon1	c.G16T	p.V6F	GGACGCGTCTCCG		42	3	0.07	69	0	0		0	1	0	0				
CENPBD1	92806	mdanderson.org	37	16	90038253	90038253	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_145039	exon1	c.C78A	p.L26L	CAATTTGAGGTCA		37	3	0.08	43	0	0				3	0	0.00			
C17orf97	400566	mdanderson.org	37	17	263637	263637	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001013672	exon2	c.T1003A	p.F335I	AAGGGCTTCCACC		132	9	0.07	229	6	0.0262008734				11	0	0.00			
WDR81	124997	mdanderson.org	37	17	1631759	1631759	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001163809	exon1	c.A3506G	p.E1169G	AGGAGGAGGGGGA		77	4	0.05	75	1	0.0133333333				0	0				
RAP1GAP2	23108	mdanderson.org	37	17	2901631	2901631	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_015085	exon14	c.G1161A	p.V387V	CGTCGTGCAGGTC		51	3	0.06	60	0	0				2	0	0.00			
P2RX5	5026	mdanderson.org	37	17	3593417	3593417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001204519	exon6	c.C561A	p.D187E	GGTGAAGTCTTCG		33	3	0.09	47	0	0				0	0				
ANKFY1	51479	mdanderson.org	37	17	4086823	4086823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001257999	exon14	c.C1948A	p.L650M	CCAGCAGCTGGGC		39	3	0.08	35	0	0				7	0	0.00			
DNAH2	146754	broad.mit.edu	37	17	7661813	7661813	+	Splice_Site	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	DNAH2	NM_020877	exon13	c.G2052T	p.R684S	GCACAGGATTATT		108	4	0.04	109	0	0		498		0	0				
GUCY2D	3000	mdanderson.org	37	17	7907368	7907368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_000180	exon3	c.C920T	p.A307V	ACGATGCCGTGCT		15	2	0.13	30	0	0				0	0				
EVPLL	645027	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	18286644	18286644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001145127	exon8	c.C732A	p.D244E	GGAGGACGGCAAG		32	12	0.38	57	0	0				0	0				
.	0	broad.mit.edu;mdanderson.org	37	17	18332331	18332331	+	RNA	SNP	C	C	T	rs71369490		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	.	.	.	.	CCGACCCGGAGAT		51	7	0.14	163	1	0.0061349693				0	0				
GRP	2922	broad.mit.edu	37	18	56887556	56887556	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	GRP	NM_001012512	exon1	c.59delG	p.R20fs	CGCCCCGGGGGCG		6	2	0.33	10	0	0		17		9	0	0.00			
REEP6	92840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1496340	1496340	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_138393	exon4	c.G405A	p.L135L	CATGCTGTATCAG		50	12	0.24	47	0	0				53	19	0.36			
MRI1	84245	mdanderson.org	37	19	13879417	13879417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001031727	exon4	c.C590T	p.A197V	AGCATGCCTTCTG		30	3	0.10	51	0	0				31	0	0.00			
TMC4	147798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54668249	54668249	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001145303	exon7	c.G1050A	p.L350L	GTTGAGCAGCACC		62	20	0.32	68	0	0				5	2	0.40			
TMEM190	147744	mdanderson.org	37	19	55889031	55889031	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_139172	exon3	c.C165T	p.C55C	CCTCTGCCTGCGT		41	3	0.07	48	0	0				7	0	0.00			
NLRC4	58484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32476309	32476309	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001199138	exon4	c.C624A	p.A208A	ACCCTGGGCCCTG		113	35	0.31	92	0	0				1	1	1.00			
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84852104	84852104	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001370	exon29	c.A4432C	p.K1478Q	ACTGGGAAAACAG		174	53	0.30	170	0	0				0	0				
TRIM43	129868	broad.mit.edu	37	2	96261953	96261953	+	Missense_Mutation	SNP	A	A	G	rs4058025		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	TRIM43	NM_138800	exon4	c.A511G	p.N171D	CAGGGCAATGTGG		283	17	0.06	251	0	0		51		0	0				
HDAC4	9759	mdanderson.org	37	2	240111669	240111669	+	Missense_Mutation	SNP	G	G	A	rs376138478		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_006037	exon4	c.C199T	p.R67W	GCTCCCGCAGGGC		28	3	0.11	27	0	0				0	0				
ZNF217	7764	hgsc.bcm.edu;mdanderson.org	37	20	52199327	52199327	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_006526	exon1	c.C39A	p.S13S	TAAGAGGGATTGA		91	4	0.04	56	0	0				8	0	0.00			
SLC2A4RG	56731	mdanderson.org	37	20	62374111	62374111	+	Silent	SNP	C	C	A	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_020062	exon7	c.C1020A	p.P340P	CCCACCCGCCTTG		30	3	0.10	26	0	0				217	0	0.00			
SCAF4	57466	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	33044299	33044310	+	In_Frame_Del	DEL	GCTGTGGCTGCT	GCTGTGGCTGCT	-	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	GCTGTGGCTGCT	GCTGTGGCTGCT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	SCAF4	NM_020706	exon20	c.2847_2858del	p.949_953del	CCTGCGGCTGTGG		93	35	0.38	49	0	0		142		90	0	0.00			
CBS	875	hgsc.bcm.edu;mdanderson.org	37	21	44479351	44479351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_000071	exon13	c.C1208A	p.T403K	TTCTCCGTGAGGT		76	4	0.05	48	0	0				119	1	0.01			
KRTAP10-10	353333	mdanderson.org	37	21	46058034	46058034	+	Missense_Mutation	SNP	G	G	A	rs1785472	by2hit2allele	TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_181688	exon1	c.G700A	p.V234M	CGCCCCGTGTGCT		85	6	0.07	43	1	0.023255814				0	0				
IL17RA	23765	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	17584446	17584446	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_014339	exon8	c.G825T	p.G275G	TAAAGGGTGCTGT		83	6	0.07	63	0	0				12	2	0.17			
GGT3P	0	broad.mit.edu	37	22	18778609	18778609	+	RNA	SNP	C	C	T	rs499895	bysubmitter;by2hit2allele	TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	.	.	.	.	CGGCCACGGCAGC		775	8	0.01	897	2	0.0022296544				1	0	0.00			
MTMR3	8897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	30416250	30416250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_153050	exon17	c.C2602T	p.L868F	TCTTGCCTTGTAA		96	38	0.40	68	0	0				13	4	0.31			
CYP2D7P1	0	broad.mit.edu;ucsc.edu	37	22	42538017	42538017	+	RNA	SNP	G	G	A	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	CYP2D7P1	.	.	.	.	GCCAGCGCTGGGA		118	24	0.20	141	1	0.0070921986		8		6	2	0.33			
FANCD2	2177	ucsc.edu	37	3	10091153	10091153	+	Silent	SNP	C	C	T	rs6785756	bycluster;byfrequency	TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	FANCD2	NM_001018115	exon17	c.C1509T	p.N503N	GTTAAACCCATCT		57	16	0.28	53	12	0.2264150943		253		1	0	0.00			
SLC26A6	65010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48663665	48663665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_022911	exon20	c.G2251A	p.D751N	GGCTGTCGGGGAC		118	37	0.31	100	0	0				74	23	0.31			
MFSD7	84179	mdanderson.org	37	4	675970	675970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_032219	exon10	c.C1457A	p.T486K	GTCGCCGTGCTGG		15	2	0.13	33	0	0				22	0	0.00			
N4BP2	55728	broad.mit.edu	37	4	40099152	40099152	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	N4BP2	NM_018177	exon3	c.T192A	p.D64E	TCCTGATGTAGTG		38	3	0.08	58	0	0		166		1	0	0.00			
BEND4	389206	broad.mit.edu;mdanderson.org	37	4	42145560	42145560	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	BEND4	NM_001159547	exon3	c.G939A	p.E313E	CTCCTCCTCTTCT		71	4	0.06	77	0	0		67		0	0				
PDHA2	5161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96761797	96761797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	PDHA2,NS,carcinoma,0,1	PDHA2	NM_005390	exon1	c.G496A	p.G166S	ATCGTCGGTGCAC		31	12	0.39	57	0	0		0	1	0	0				
ELF2	1998	broad.mit.edu	37	4	140046335	140046335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	ELF2	NM_201999	exon3	c.C221A	p.A74E	TTCTCGGTCTCAA		103	4	0.04	72	0	0		43		20	0	0.00			
OTUD4	54726	hgsc.bcm.edu	37	4	146059041	146059041	+	Silent	SNP	A	A	G	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	OTUD4,bladder,carcinoma,0,2	OTUD4	NM_001102653	exon21	c.T2691C	p.H897H	GGGAGGATGAGCC		122	5	0.04	88	1	0.0113636364		0	2	14	0	0.00			
SKP2	6502	mdanderson.org	37	5	36168536	36168536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	SKP2_ENST00000274255,NS,carcinoma,0,1	SKP2_ENST00000274255	NM_005983	exon5	c.G658T	p.D220Y	CTTTCGGATCCCA		49	3	0.06	51	0	0		0	1	30	0	0.00			
ATXN1	6310	mdanderson.org	37	6	16327894	16327894	+	Missense_Mutation	SNP	C	C	A	rs201040133		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001128164	exon7	c.G648T	p.Q216H	CTGCTGCTGCTGC		39	4	0.10	35	1	0.0285714286				2	0	0.00			
NACAD	23148	mdanderson.org	37	7	45123881	45123881	+	Missense_Mutation	SNP	C	C	T	rs61740891	bycluster;byfrequency	TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001146334	exon2	c.G1898A	p.G633D	GTGAGGCCCTCTT		8	2	0.25	10	0	0	0.008			5	0	0.00			
UPP1	7378	mdanderson.org	37	7	48139313	48139313	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_003364	exon4	c.G91T	p.E31X	ATGAAAGAAGATA		48	3	0.06	69	0	0				2	0	0.00			
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48654898	48654898	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_152701	exon59	c.C14762G	p.A4921G	GTGAGGCTCTTTG		129	42	0.33	171	0	0				0	0				
MEPCE	56257	hgsc.bcm.edu	37	7	100028454	100028454	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	MEPCE,NS,carcinoma,0,1	MEPCE	NM_019606	exon1	c.G813C	p.Q271H	CCACCAGCAGCAG		40	2	0.05	47	1	0.0212765957		0	1	15	0	0.00			
FOXP2	93986	mdanderson.org	37	7	114270000	114270000	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	FOXP2,NS,carcinoma,0,6	FOXP2	NM_148898	exon6	c.G612A	p.Q204Q	ACAACAGCAGCAG		14	2	0.14	26	0	0		0	6	1	0	0.00			
TRPV6	55503	bcgsc.ca	37	7	142573614	142573614	+	Missense_Mutation	SNP	G	G	T	rs201899094	bycluster;alternate_allele	TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	TRPV6	NM_018646	exon7	c.C806A	p.T269K	CCATACGTCCACT		54	4	0.07	70	0	0		108		1	0	0.00			
MLL3	58508	mdanderson.org	37	7	151962269	151962269	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_170606	exon8	c.G1038A	p.V346V	GTCGCACACTGCA		123	9	0.07	117	0	0				1	0	0.00			
TTC39B	158219	mdanderson.org	37	9	15175041	15175041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_152574	exon19	c.C1934A	p.A645D	TTTATGGCCTTGT		44	3	0.07	55	0	0				4	0	0.00			
GNAQ	2776	mdanderson.org	37	9	80537095	80537095	+	Nonsense_Mutation	SNP	G	G	T	rs200106152	by1000genomes	TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_002072	exon2	c.C303A	p.Y101X	ATACTTGTATGGG		49	6	0.12	42	0	0	0			12	0	0.00			
COL27A1	85301	mdanderson.org	37	9	117002729	117002729	+	Silent	SNP	C	C	A	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_032888	exon21	c.C2797A	p.R933R	GGAGCCCGAGGCC		33	3	0.09	45	0	0				39	0	0.00			
STXBP1	6812	mdanderson.org	37	9	130434352	130434352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	NM_001032221	exon12	c.A986G	p.Q329R	TGTCCCAGATGCT		36	3	0.08	59	0	0				9	0	0.00			
PTGES	9536	broad.mit.edu	37	9	132501706	132501707	+	Translation_Start_Site	INS	-	-	ACACAT	rs137962222	bycluster;by1000genomes	TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	PTGES	.	.	.	.	TACACACACACAT		5	3	0.60	5	0	0		7		11	0	0.00			
CYTB	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	14760	14760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOJ-01A-12D-A435-10	TCGA-XE-AAOJ-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	88e1b406-efd2-4cb8-b0e6-9c731cb5bb8d	2c753e80-371a-4046-a18c-d1f470e43b3d	.	.	ENST00000361789	exon1	c.G14A	p.R5H	CAATACGCAAAAC		44	39	0.89	111	0	0				0	0				
