Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34209037	34209037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_052896	exon14	c.G1897T	p.V633F	TGATGACCAGGAA		55	12	0.22	57	0	0				0	0				
DMAP1	55929	mdanderson.org	37	1	44685093	44685093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001034024	exon8	c.G922T	p.A308S	GAGACTGCAGGCA		41	3	0.07	48	0	0				32	0	0.00			
TCTEX1D4	343521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45271711	45271711	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001013632	exon2	c.C630T	p.F210F	CACCGCGAAGAGC		67	19	0.28	66	0	0				1	1	1.00			
TMEM48	55706	mdanderson.org	37	1	54291599	54291599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_018087	exon5	c.C466A	p.P156T	CAGCAGGGCTACC		31	3	0.10	44	0	0				1	0	0.00			
MAGI3	260425	broad.mit.edu	37	1	114215976	114215976	+	Silent	SNP	A	A	G	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	MAGI3	NM_152900	exon19	c.A3078G	p.R1026R	GGAGAGAGGCCCC		129	3	0.02	133	0	0		181		0	0				
TRIM45	80263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117663450	117663450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001145635	exon1	c.G374A	p.S125N	CGTAGGCTCTCCA		103	26	0.25	120	0	0				1	1	1.00			
NBPF10	100132406	hgsc.bcm.edu	37	1	145293535	145293535	+	Missense_Mutation	SNP	C	C	G	rs55936365		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	NBPF10,NS,carcinoma,0,2	NBPF10	NM_001039703	exon1	c.C130G	p.L44V	TGTTTTCTAACTC		48	3	0.06	51	2	0.0392156863		0	2	1	0	0.00			
NBPF10	100132406	broad.mit.edu	37	1	145311916	145311916	+	Missense_Mutation	SNP	A	A	G	rs76836566		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	NBPF10_ENST00000369338,NS,carcinoma,0,3	NBPF10	.	.	.	.	TTTTACATATTGG		51	4	0.08	39	1	0.0256410256		221	3	1	0	0.00			
RUSC1	23623	broad.mit.edu	37	1	155292770	155292770	+	Silent	SNP	A	A	C	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	RUSC1	NM_001105204	exon2	c.A1206C	p.P402P	GCCCCCACCCCCG		39	21	0.54	39	14	0.358974359		85		0	0				
ASH1L	55870	broad.mit.edu	37	1	155340657	155340657	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	ASH1L	NM_018489	exon11	c.6450delA	p.K2150fs	CCAACCTTTTTCC		183	7	0.04	142	0	0		279		1	0	0.00			
SH2D2A	9047	mdanderson.org	37	1	156783685	156783685	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001161441	exon5	c.G552A	p.P184P	GCTGAGCGGGTGC		16	2	0.13	8	0	0				1	0	0.00			
GUK1	2987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228335314	228335314	+	Splice_Site	SNP	A	A	G	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001242839	exon6	c.391-2A>G	.	CTTTTTAGGAGCA		96	35	0.36	57	0	0				2	1	0.50			
STAM	8027	mdanderson.org	37	10	17747006	17747006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_003473	exon11	c.G1038T	p.K346N	TGAAAAGCTGGAA		70	4	0.06	48	0	0				1	0	0.00			
KIAA1217	56243	broad.mit.edu	37	10	24669920	24669920	+	Silent	SNP	T	T	C	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	KIAA1217,NS,carcinoma,+1,1	KIAA1217	NM_019590	exon3	c.T477C	p.P159P	AACCCCTTTTTCC		108	4	0.04	70	1	0.0142857143		235	1	0	0				
FZD8	8325	mdanderson.org	37	10	35930317	35930317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_031866	exon1	c.C41A	p.A14D	AAGGCGGCCAGCA		34	3	0.09	25	0	0				0	0				
TUB	7275	mdanderson.org	37	11	8122144	8122144	+	Missense_Mutation	SNP	G	G	T	rs144050808	bycluster;alternate_allele	TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	TUB,NS,carcinoma,0,1	TUB	NM_003320	exon11	c.G1376T	p.R459L	GCCCCCGCAACGT		38	3	0.08	63	0	0		0	1	0	0				
NAALADL1	10004	mdanderson.org	37	11	64820723	64820723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_005468	exon8	c.C1165A	p.L389I	GGGAGAGCTCCAG		33	3	0.09	88	0	0				0	0				
SIPA1	6494	mdanderson.org	37	11	65413325	65413325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_006747	exon6	c.C1160T	p.T387M	CCACAGCGGATTC		41	3	0.07	78	0	0				0	0				
CTSW	1521	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65648922	65648922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	CTSW	NM_001335	exon3	c.G217T	p.A73S	GCCCAGGCTCAGA		54	5	0.09	113	0	0		18		1	0	0.00			
NAALAD2	10003	mdanderson.org	37	11	89924798	89924798	+	Silent	SNP	C	C	A	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_005467	exon19	c.C2106A	p.I702I	TGCTATCTTTGAT		22	2	0.09	40	0	0				3	0	0.00			
CHD4	1108	hgsc.bcm.edu	37	12	6711150	6711150	+	Missense_Mutation	SNP	C	C	A	rs150832622	bycluster;by1000genomes	TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001273	exon4	c.G414T	p.E138D	ATCCTCCTCCTCC		94	4	0.04	30	0	0	0.002			4	0	0.00			
FAM186A	121006	hgsc.bcm.edu	37	12	50747102	50747102	+	Silent	SNP	A	A	G	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	FAM186A_ENST00000327337,NS,carcinoma,0,3	FAM186A_ENST00000327337	NM_001145475	exon4	c.T3513C	p.L1171L	AGGGGTAAGAGGG		193	9	0.05	99	2	0.0202020202		0	3	0	0				
KRT6B	3854	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52841624	52841624	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	KRT6B	NM_005555	exon7	c.C1362T	p.V454V	CAGCTTGACGTTC		217	27	0.12	112	1	0.0089285714		90		0	0				
SFSWAP	6433	mdanderson.org	37	12	132195838	132195838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001261411	exon1	c.G64T	p.G22W	GAGGCCGGGCCAG		33	3	0.09	31	0	0				3	0	0.00			
ZNF268	10795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133779315	133779315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001165881	exon6	c.T1043C	p.V348A	AGCTTGTTATACA		62	6	0.10	33	0	0				2	2	1.00			
CLN5	1203	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	77574850	77574851	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	CLN5	NM_006493	exon4	c.970_971insT	p.V324fs	ACATCTGTTTTTG		84	23	0.27	119	0	0		32		6	0	0.00			
CTSG	1511	mdanderson.org	37	14	25045411	25045411	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001911	exon1	c.C19A	p.L7M	CCAGCAGAAGCAG		43	3	0.07	46	0	0				0	0				
.	0	broad.mit.edu	37	14	106539367	106539367	+	RNA	SNP	C	C	G	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	.	.	.	.	CAGCTGCACCTGG		245	6	0.02	177	1	0.0056497175				12	1	0.08	rescued with RNA-seq		
RYR3	6263	mdanderson.org	37	15	33926901	33926901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	RYR3,extremity,malignant_melanoma,-1,1	RYR3	NM_001243996	exon25	c.G3142T	p.G1048W	GGTTACGGGTATA		49	3	0.06	65	0	0		-1	1	0	0				
.	0	broad.mit.edu	37	15	76075457	76075457	+	RNA	SNP	C	C	T	rs200753178		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	.	.	.	.	AGGCTGCGAAAGC		177	6	0.03	174	0	0				0	0				
FES	2242	ucsc.edu	37	15	91435302	91435302	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	FES	NM_002005	exon13	c.G1668T	p.L556L	GGTGCTGAACCAT		35	4	0.11	36	0	0		102		1	0	0.00			
WDR90	197335	mdanderson.org	37	16	705434	705434	+	Silent	SNP	C	C	A	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_145294	exon15	c.C1684A	p.R562R	CAGGCCCGGGACG		21	2	0.10	22	0	0				0	0				
IFT140	9742	mdanderson.org	37	16	1574816	1574816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	IFT140,NS,carcinoma,-1,1	IFT140	NM_014714	exon23	c.G2966A	p.R989H	TGGATGCGGACCA		47	3	0.06	44	0	0		-1	1	0	0				
FLYWCH1	84256	ucsc.edu	37	16	2983280	2983280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	FLYWCH1	NM_020912	exon5	c.G943A	p.A315T	AGCCGGGCCATCA		30	4	0.13	29	0	0		27		0	0				
SULT1A1	6817	hgsc.bcm.edu	37	16	28619841	28619841	+	Silent	SNP	G	G	T	rs201320226	by1000genomes;alternate_allele	TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	SULT1A1,colon,carcinoma,0,1	SULT1A1	NM_177534	exon2	c.C232A	p.R78R	GCACCCGCATGAA		67	3	0.04	60	0	0		0	1	2	0	0.00			
ITGAX	3687	mdanderson.org	37	16	31367992	31367992	+	Missense_Mutation	SNP	G	G	T	rs369769040		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_000887	exon3	c.G190T	p.G64C	CAAACGGGTGGCC		44	3	0.07	34	0	0				2	0	0.00			
PKD1L2	114780	broad.mit.edu	37	16	81155069	81155069	+	RNA	DEL	A	A	-	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	PKD1L2	.	.	.	.	CATCTCAAAAAAA		6	2	0.33	4	0	0		361		0	0				
ATP2C2	9914	mdanderson.org	37	16	84497330	84497330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_014861	exon27	c.G2833T	p.D945Y	CCTGAAGATGTGT		73	4	0.05	75	0	0				0	0				
OR1G1	8390	mdanderson.org	37	17	3030495	3030495	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_003555	exon1	c.C351A	p.V117V	GGCCATGACCGCC		32	3	0.09	46	0	0				0	0				
GP1BA	2811	mdanderson.org	37	17	4837656	4837656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_000173	exon2	c.G1757T	p.R586L	GGGGACGGCAAGT		40	3	0.08	67	0	0				0	0				
TNK1	8711	mdanderson.org	37	17	7292338	7292338	+	Missense_Mutation	SNP	C	C	T	rs375240414	alternate_allele	TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001251902	exon13	c.C1936T	p.R646C	TGCTGGCGCATCC		44	3	0.07	68	0	0				2	0	0.00			
TRAPPC1	58485	mdanderson.org	37	17	7834370	7834370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	TRAPPC1,NS,carcinoma,+1,1	TRAPPC1	NM_021210	exon3	c.G268A	p.V90M	GTCCCACGCCCAA		37	3	0.08	61	0	0		1	1	177	0	0.00			
MAPK7	5598	mdanderson.org	37	17	19283106	19283106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_002749	exon3	c.G244A	p.A82T	CAGGTGGCCATCA		19	2	0.11	33	0	0				0	0				
SLC47A2	146802	mdanderson.org	37	17	19584743	19584743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_152908	exon15	c.C1437A	p.F479L	TGCCAGGAAGACA		49	3	0.06	85	0	0				0	0				
RUNDC3A	10900	mdanderson.org	37	17	42393855	42393855	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_006695	exon9	c.G1056T	p.G352G	TAATGGGGCCGAG		29	3	0.10	44	0	0				0	0				
CDC27	996	hgsc.bcm.edu	37	17	45216113	45216113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	CDC27_ENST00000531206,caecum,carcinoma,+1,6	CDC27_ENST00000531206	NM_001114091	exon13	c.T1714C	p.S572P	CTGGCGAATTTTT		30	2	0.07	30	1	0.0333333333		1	6	9	0	0.00			
ANKRD30B	374860	mdanderson.org	37	18	14748616	14748616	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001145029	exon1	c.G198T	p.L66L	CAACCTGAACAAA		49	3	0.06	62	0	0				0	0				
PPAN-P2RY11	692312	mdanderson.org	37	19	10225090	10225090	+	Missense_Mutation	SNP	G	G	T	rs368370567	alternate_allele	TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	PPAN-P2RY11,colon,carcinoma,+2,2	PPAN-P2RY11	NM_001040664	exon13	c.G2061T	p.M687I	CATCATGCGGGTG		40	3	0.08	22	0	0		2	2	15	0	0.00			
OCEL1	79629	mdanderson.org	37	19	17337509	17337509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_024578	exon2	c.G77A	p.R26H	CCGCCCGCAGACC		19	2	0.11	9	0	0				1	0	0.00			
CAPNS1	826	broad.mit.edu	37	19	36632054	36632054	+	Silent	SNP	C	C	T	rs17879825		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	CAPNS1	NM_001749	exon2	c.C141T	p.G47G	CGGCGGCGGTGGT		103	10	0.10	120	2	0.0166666667		19		1	1	1.00			
CNOT3	4849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54651887	54651887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_014516	exon11	c.C899T	p.P300L	AGTCTCCAGCCAA		158	30	0.19	115	0	0				7	2	0.29			
ZNF814	730051	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	58384415	58384415	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001144989	exon3	c.C2343T	p.F781F	TTCAGCGAAAGAT		87	5	0.06	97	0	0				6	0	0.00			
IL1RL1	9173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	102955396	102955396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_016232	exon3	c.A161G	p.N54S	AAACAAACAAAAG		182	38	0.21	143	0	0				0	0				
NSFL1C	55968	mdanderson.org	37	20	1424434	1424434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_016143	exon9	c.C1073A	p.A358D	AGGTTGGCTTCCT		45	3	0.07	41	0	0				112	0	0.00			
BAGE	85319	broad.mit.edu	37	21	11058613	11058614	+	RNA	INS	-	-	A	rs377480117	bycluster	TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	.	.	.	.	TTTTTTTAAAGCA		7	3	0.43	10	0	0				0	0				
DYRK1A	1859	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38884387	38884387	+	Silent	SNP	T	T	C	rs372827991		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	DYRK1A	NM_001396	exon11	c.T1845C	p.H615H	CCACCATCACCAC		204	40	0.20	97	1	0.0103092784		85		7	1	0.14			
LSS	4047	hgsc.bcm.edu;mdanderson.org	37	21	47642636	47642636	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001145436	exon4	c.C336A	p.C112X	CACGTGGCAAGTG		66	6	0.09	27	0	0				0	0				
.	0	broad.mit.edu	37	22	18846006	18846006	+	RNA	SNP	A	A	G	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	.	.	.	.	AGGCCGACACTCA		118	4	0.03	68	1	0.0147058824				0	0				
MIR658	724028	mdanderson.org	37	22	38240344	38240344	+	RNA	SNP	C	C	A	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	.	.	.	.	AGCTGGCGGGCGG		13	4	0.31	17	0	0				0	0				
RFTN1	23180	mdanderson.org	37	3	16358655	16358655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_015150	exon10	c.C1417A	p.Q473K	CTGCTTGTTGTTT		48	4	0.08	83	0	0				4	0	0.00			
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	3	130128890	130128890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_153264	exon19	c.A4580G	p.K1527R	GACAAAAGGGCTC		95	4	0.04	106	0	0				0	0				
.	56604	bcgsc.ca	37	4	190904383	190904383	+	RNA	SNP	G	G	A	rs76146840	bycluster;byfrequency;by1000genomes	TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	.	.	.	.	TATGCAGAAGGTC		38	20	0.53	86	3	0.0348837209				1	0	0.00			
TRPC7	57113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	135692524	135692524	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001167576	exon2	c.G552A	p.L184L	CTTGAGCAGCAGG		66	28	0.42	75	0	0				0	0				
PCDHA2	56146	mdanderson.org	37	5	140176344	140176344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	PCDHA2_ENST00000526136,NS,carcinoma,0,4	PCDHA2_ENST00000526136	NM_031495	exon1	c.G1795A	p.A599T	GTGGACGCTGACT		51	3	0.06	62	0	0		0	4	0	0				
PCDHA6	56142	bcgsc.ca	37	5	140209479	140209479	+	Silent	SNP	A	A	G	rs201316180	by1000genomes	TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	PCDHA6	NM_018909	exon1	c.A1803G	p.S601S	CGACTCAGGCTAC		52	4	0.08	54	0	0		442		0	0				
FAM71B	153745	mdanderson.org	37	5	156590354	156590354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_130899	exon2	c.C922A	p.Q308K	TCACTTGACCTGG		42	3	0.07	42	0	0				0	0				
BOD1	91272	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	173043252	173043252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001159651	exon1	c.G188A	p.G63D	AAAAGGCCCCGGC		25	10	0.40	28	0	0				3	3	1.00			
RNF182	221687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	13977913	13977913	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001165032	exon4	c.T563G	p.L188W	TGTGGTTGCTAGG		86	18	0.21	115	0	0				0	0				
TMEM184A	202915	mdanderson.org	37	7	1586673	1586673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001097620	exon9	c.G1157A	p.G386D	TGGGTGCCGGGCC		43	3	0.07	16	0	0				0	0				
ELFN1	392617	mdanderson.org	37	7	1786093	1786093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_001128636	exon2	c.G1861T	p.G621C	GCCTTCGGCCACA		21	2	0.10	10	0	0				0	0				
FOXP2	93986	mdanderson.org	37	7	114304486	114304486	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_148898	exon17	c.G2073T	p.P691P	TCAGCCGCACATG		52	3	0.06	54	0	0				0	0				
UBXN8	7993	broad.mit.edu	37	8	30608866	30608867	+	RNA	INS	-	-	A	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	UBXN8	.	.	.	.	ATCTCTTAAAAAA		100	7	0.07	45	0	0		13		0	0				
.	389652	bcgsc.ca	37	8	47512175	47512175	+	RNA	SNP	A	A	G	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	.	.	.	.	CAGAAAAAAATTG		196	30	0.15	121	0	0				3	2	0.67			
LRRCC1	85444	broad.mit.edu	37	8	86019547	86019547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	LRRCC1,colon,carcinoma,0,2	LRRCC1	NM_033402	exon1	c.C17T	p.A6V	CGGCGGCGGTGGT		146	5	0.03	64	1	0.015625		212	2	0	0				
NPR2	4882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35792698	35792698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_003995	exon1	c.G293A	p.G98D	TGTTAGGTCCCGG		53	17	0.32	70	0	0				0	0				
.	441442	bcgsc.ca	37	9	68357375	68357375	+	RNA	SNP	G	G	A	rs113072271	bycluster	TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	.	.	.	.	TGCTTGGCATCTA		38	7	0.18	22	0	0				1	0	0.00			
NOL8	55035	mdanderson.org	37	9	95077301	95077301	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	NM_017948	exon7	c.C1606T	p.R536X	ACTGTCGGCCTCT		44	3	0.07	59	0	0				7	0	0.00			
TUBBP5	643224	hgsc.bcm.edu	37	9	141071002	141071002	+	RNA	SNP	A	A	G	rs28433994		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	ENSG00000254381,bladder,carcinoma,0,4	ENSG00000254381	.	.	.	.	AGCGCTATATGAC		46	4	0.09	29	0	0		0	4	9	0	0.00			
FAM101B	359845	mdanderson.org	37	17	293282	293282	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAOL-01A-11D-A435-10	TCGA-XE-AAOL-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	84e9847c-b405-4c3b-8cd1-13c357f89650	92f7f68c-d8cb-43dd-a559-5eaf1e860ec8	.	.	.	.	.	.	GGAGGTGTACCTG		26	3	0.12	34	0	0				0	0				
