Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
RNF207	388591	mdanderson.org	37	1	6266729	6266729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_207396	exon2	c.G134T	p.C45F	ACTTCTGTGCCGG		33	3	0.09	29	0	0				3	0	0.00			
MIR3675	0	broad.mit.edu	37	1	17185383	17185384	+	RNA	INS	-	-	C	rs112074527	bycluster;by1000genomes	TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	.	.	.	.	AATTTTTAGTGCA		7	3	0.43	7	0	0				0	0				
ATP13A2	23400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17318882	17318882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_022089	exon18	c.C1861T	p.P621S	TGACTGGCACCGG		80	8	0.10	78	0	0				183	42	0.23			
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	21299496	21299496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001198803	exon11	c.C455T	p.T152I	CTTACAGTTTTTT		69	13	0.19	64	0	0				61	18	0.30			
EPHB2	2048	mdanderson.org	37	1	23111394	23111394	+	Silent	SNP	G	G	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	EPHB2,NS,NS,0,1	EPHB2	NM_004442	exon3	c.G636T	p.S212S	CCTGTCGGGGGCT		55	3	0.05	73	0	0		0	1	13	0	0.00			
RAB42	115273	hgsc.bcm.edu;bcgsc.ca	37	1	28920547	28920547	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.,1	.	NM_001193532	exon2	c.574delT	p.W192fs	AGGGCTGGGGGGG		69	13	0.19	76	0	0		10	1	44	0	0.00			
GUCA2B	2981	mdanderson.org	37	1	42619175	42619175	+	Silent	SNP	G	G	C	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_007102	exon1	c.G54C	p.L18L	CCTCCTGCTGCTG		37	3	0.08	29	0	0				0	0				
USP1	7398	broad.mit.edu;mdanderson.org	37	1	62916589	62916589	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	USP1	NM_001017415	exon9	c.T2295G	p.N765K	TCTGAATTCTCTT		53	6	0.11	43	0	0		51		186	60	0.32			
NRAS	4893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	T	C	rs11554290	bycluster;byfrequency;byhapmap	TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	NRAS,NS,haematopoietic_neoplasm,-1,2068	NRAS	NM_002524	exon3	c.A182G	p.Q61R	TCTTCTTGTCCAG		101	18	0.18	97	0	0		-1	2068	156	50	0.32			
.	149013	broad.mit.edu	37	1	146397444	146397444	+	Silent	SNP	A	A	G	rs7364675	bycluster	TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	.	.	.	.	GCTGAAACAAGCT		8	2	0.25	9	0	0				20	0	0.00			
IVL	3713	broad.mit.edu	37	1	152883337	152883337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	IVL	NM_005547	exon2	c.A1064G	p.H355R	TGGAGCACCTGGA		79	4	0.05	97	1	0.0103092784		100		0	0				
FMN2	56776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	240371435	240371435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	FMN2,NS,carcinoma,-1,2	FMN2	NM_020066	exon5	c.C3323T	p.P1108L	GCATACCTCCTCC		71	18	0.25	77	0	0		-1	2	8	5	0.63			
WAC	51322	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	28822948	28822948	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	WAC	NM_100486	exon2	c.C63G	p.D21E	GGGGGACTCGCAG		134	26	0.19	152	2	0.0131578947		77		224	54	0.24			
FZD8	8325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	35930262	35930262	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_031866	exon1	c.G96C	p.E32D	TGCCAGCTCCTTG		41	11	0.27	51	0	0				42	27	0.64			
HSD17B7P2	0	broad.mit.edu	37	10	38652034	38652035	+	RNA	INS	-	-	TT	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	.	.	.	.	TTAACTCTTTTTT		5	2	0.40	4	0	0				0	0				
FAM149B1	317662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	74994957	74994957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_173348	exon12	c.C1483T	p.H495Y	AAACCCCATGGCG		74	11	0.15	80	0	0				67	18	0.27			
DGKZ	8525	mdanderson.org	37	11	46387955	46387955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001105540	exon2	c.G149T	p.R50L	AGCGGCGCCGCTC		22	2	0.09	22	0	0				14	0	0.00			
AMBRA1	55626	mdanderson.org	37	11	46419165	46419165	+	Silent	SNP	G	G	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001267782	exon20	c.C3741A	p.T1247T	TGGCTGGGTTGGC		42	3	0.07	45	0	0				93	0	0.00			
.	219537	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57309031	57309031	+	Splice_Site	SNP	G	G	A	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	.	.	.	.	GGGAGAGTACGGC		73	12	0.16	99	0	0				0	0				
VWCE	220001	mdanderson.org	37	11	61048319	61048319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_152718	exon8	c.G1176A	p.M392I	TTCATGCATGGCT		33	3	0.09	46	0	0				13	0	0.00			
RBM4	5936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66411186	66411186	+	Silent	SNP	T	T	A	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_002896	exon3	c.T678A	p.R226R	CTGCCGTGCTGCC		51	11	0.22	51	0	0				261	93	0.36			
KDM2A	22992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67022423	67022423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_012308	exon21	c.G3386A	p.C1129Y	GAGGATGCAAGCA		64	9	0.14	99	0	0				253	65	0.26			
APLP2	334	mdanderson.org	37	11	130013286	130013286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001642	exon18	c.G2235T	p.M745I	CAAGATGCAGAAC		36	3	0.08	54	0	0				940	0	0.00			
PRB3	5544	broad.mit.edu	37	12	11420721	11420721	+	RNA	SNP	A	A	G	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	PRB3	NM_006249	exon3	c.T462C	p.G154G	CGGGGGACCTTGG		199	24	0.12	136	14	0.1029411765		84		0	0				
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	26636703	26636703	+	Silent	SNP	C	C	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	ITPR2,NS,carcinoma,-1,1	ITPR2	NM_002223	exon42	c.G5940A	p.K1980K	TACATTCTTCTCA		253	27	0.11	185	1	0.0054054054		-1	1	38	0	0.00			
PLEKHA8P1	51054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	45567287	45567287	+	RNA	SNP	C	C	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	PLEKHA8P1,NS,carcinoma,+2,1	PLEKHA8P1	.	.	.	.	AGAGGGCTTCAGT		117	9	0.08	105	0	0		2	1	46	6	0.13			
HOXC13	3229	mdanderson.org	37	12	54333053	54333053	+	Silent	SNP	C	C	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_017410	exon1	c.C363T	p.Y121Y	GGGCTACGGCTAC		42	4	0.10	34	0	0				0	0				
POLE	5426	mdanderson.org	37	12	133209345	133209345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	POLE_ENST00000320574,right_lower_lobe,carcinoma,+1,2	POLE_ENST00000320574	NM_006231	exon44	c.G6041T	p.G2014V	CTCAGCCCGTCCT		23	4	0.17	25	0	0		1	2	177	0	0.00			
TPTE2P1	0	broad.mit.edu	37	13	25525327	25525328	+	RNA	INS	-	-	A	rs139677331	by1000genomes	TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	.	.	.	.	AAAAAAGAAAAAA		8	3	0.38	7	0	0				0	0				
FAM155A	728215	mdanderson.org	37	13	108518661	108518661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	FAM155A,NS,carcinoma,0,2	FAM155A	NM_001080396	exon1	c.A284G	p.Q95R	CGCCGCTGCTGCT		20	2	0.10	37	0	0		0	2	1	0	0.00			
CMTM5	116173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23847656	23847656	+	Silent	SNP	C	C	T	rs371218018		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_138460	exon2	c.C225T	p.F75F	CCTCTTCCTCTAT		144	26	0.18	135	0	0				0	0				
PSMA6	5687	broad.mit.edu	37	14	35782215	35782216	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	PSMA6	NM_002791	exon5	c.538_539insA	p.E180fs	TTCCTTGAAAAAA		100	8	0.08	115	0	0		18		850	0	0.00			
SYNE3	161176	mdanderson.org	37	14	95918708	95918708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_152592	exon6	c.G1150A	p.A384T	CCAGCGCCGCCCG		18	2	0.11	20	0	0				1	0	0.00			
CHRM5	0	broad.mit.edu	37	15	34355354	34355354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	CHRM5	NM_012125	exon3	c.A436G	p.R146G	CCGAAAAGGGCTG		111	3	0.03	95	0	0		59		0	0				
RORA	6095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	60849111	60849111	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_134260	exon3	c.A236T	p.N79I	TTGCCATTCTGCC		176	17	0.10	150	0	0				0	0				
RORA	6095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	60849113	60849113	+	Silent	SNP	C	C	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_134260	exon3	c.G234A	p.Q78Q	GCCATTCTGCCTC		178	18	0.10	151	0	0				0	0				
PRKXP1	441733	hgsc.bcm.edu	37	15	101094337	101094337	+	RNA	SNP	G	G	A	rs191146252	by1000genomes	TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	.	.	.	.	GTCCCTGTAGATG		122	15	0.12	102	0	0	0			11	2	0.18			
FAM86A	196483	ucsc.edu	37	16	5140488	5140488	+	Missense_Mutation	SNP	C	C	T	rs200021489	byfrequency	TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	FAM86A	NM_201400	exon5	c.G421A	p.A141T	GGGCGGCGTCCCA		144	4	0.03	169	1	0.0059171598		32		50	12	0.24	rescued with RNA-seq		
IL27	246778	broad.mit.edu	37	16	28511197	28511197	+	Silent	SNP	T	T	C	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	IL27	NM_145659	exon5	c.A507G	p.E169E	CTCCTCTTCCTCC		35	3	0.09	42	1	0.0238095238		27		4	0	0.00			
SETD6	79918	mdanderson.org	37	16	58549762	58549762	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_024860	exon2	c.T95G	p.V32G	GGCGGGTGGGGCT		13	4	0.31	10	1	0.1				22	1	0.05			
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7574027	7574027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	TP53_ENST00000269305,NS,carcinoma,0,16	TP53_ENST00000269305	NM_000546	exon10	c.G1000T	p.G334W	CACGCCCACGGAT		76	10	0.13	106	0	0		0	16	124	35	0.28			
EFNB3	1949	mdanderson.org	37	17	7612495	7612495	+	Silent	SNP	C	C	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001406	exon5	c.C624T	p.T208T	CCCCACCAGCAAT		16	2	0.13	18	0	0				19	8	0.42			
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		188	12	0.06	193	8	0.0414507772				37	26	0.70			
PSMD11	5717	broad.mit.edu	37	17	30771555	30771555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	PSMD11	NM_002815	exon1	c.C14T	p.A5V	CGGCGGCGGTGGT		160	5	0.03	133	0	0		41		116	0	0.00			
ERBB2	2064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37879626	37879626	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_004448	exon17	c.G2001C	p.L667F	GGTCTTGGGGGTG		84	17	0.20	109	0	0				49	18	0.37			
KRT9	3857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39727976	39727976	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_000226	exon1	c.T269C	p.F90S	CCCCCAAAGCCAC		136	21	0.15	145	0	0				0	0				
CDC27	996	mdanderson.org	37	17	45234397	45234397	+	Missense_Mutation	SNP	G	G	A	rs7350908	bycluster;byhapmap	TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001114091	exon7	c.C724T	p.P242S	TATCAGGTGAAAT		76	7	0.09	68	2	0.0294117647				131	0	0.00			
OXLD1	339229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79632527	79632527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001039842	exon2	c.G148A	p.A50T	CAGGGGCTTGCGC		60	9	0.15	59	0	0				86	9	0.10			
BSG	682	mdanderson.org	37	19	577976	577976	+	Silent	SNP	C	C	A	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001728	exon2	c.C270A	p.A90A	CGCGGCCAGCACC		41	3	0.07	62	0	0				8	0	0.00			
EMR1	2015	mdanderson.org	37	19	6937381	6937381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001974	exon19	c.G2509T	p.G837W	CTGCAGGGGGCCT		55	3	0.05	70	0	0				19	0	0.00			
PEX11G	92960	mdanderson.org	37	19	7542209	7542209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_080662	exon5	c.G605A	p.G202D	AGCACGCCCCGGG		28	3	0.11	23	0	0				6	0	0.00			
CAMSAP3	57662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7675802	7675802	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001080429	exon10	c.A1115T	p.N372I	CTCAGAACAACAG		57	12	0.21	85	0	0				23	15	0.65			
FBN3	84467	mdanderson.org	37	19	8145898	8145898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_032447	exon58	c.A7442G	p.Q2481R	CAGGCCTGGTGGT		17	2	0.12	25	0	0				35	0	0.00			
PRKCSH	5589	hgsc.bcm.edu	37	19	11558370	11558370	+	Silent	SNP	G	G	A	rs77563879	bycluster	TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	PRKCSH,caecum,carcinoma,0,1	PRKCSH	NM_001001329	exon11	c.G966A	p.E322E	GGAGGAGGAAGAA		55	3	0.05	77	1	0.012987013		0	1	127	0	0.00			
MRI1	84245	broad.mit.edu;mdanderson.org	37	19	13879552	13879552	+	Splice_Site	SNP	G	G	A	rs147924371		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	MRI1	NM_001031727	exon4	c.724+1G>A	.	TGTCAGGTAAGCA		38	5	0.13	42	0	0		35		14	14	1.00			
SLC25A42	284439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19218819	19218819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_178526	exon7	c.T614C	p.F205S	TGAGCTTCTTCAC		71	13	0.18	76	0	0				27	6	0.22			
ZNF850	342892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	37239994	37239994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001193552	exon5	c.T1948C	p.C650R	TCCCACATTCCTG		20	6	0.30	20	0	0				8	2	0.25			
MEGF8	1954	mdanderson.org	37	19	42880076	42880076	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001271938	exon42	c.G7687T	p.E2563X	CCAGCAGAGCCAC		39	3	0.08	44	0	0				11	0	0.00			
ZC3H4	23211	mdanderson.org	37	19	47575844	47575844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_015168	exon12	c.C1567A	p.P523T	CAGGGGGCCGAGG		35	3	0.09	31	0	0				18	0	0.00			
ZNF808	388558	mdanderson.org	37	19	53050833	53050833	+	Silent	SNP	A	A	G	rs377723416		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001039886	exon4	c.A132G	p.A44A	CCCTGCACAGAGG		65	7	0.11	97	1	0.0103092784				22	0	0.00			
CNOT3	4849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54646888	54646888	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	CNOT3,NS,carcinoma,+1,6	CNOT3	NM_014516	exon3	c.A59C	p.E20A	TGTCCGAGGGCGT		71	10	0.14	75	0	0		1	6	171	54	0.32			
LOC401010	0	bcgsc.ca	37	2	132200890	132200890	+	RNA	SNP	T	T	C	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	.	.	.	.	TACAGCTGCTCCA		111	17	0.15	119	0	0				53	5	0.09			
MIR548N	100302152	hgsc.bcm.edu	37	2	179500487	179500487	+	RNA	SNP	G	G	A	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	.	.	.	.	GAACAAGTAATAT		103	13	0.13	96	0	0				0	0				
ITGA4	3676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	182400167	182400167	+	Silent	SNP	C	C	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	ITGA4,NS,carcinoma,0,1	ITGA4	NM_000885	exon28	c.C3012T	p.F1004F	TGGCTTCTTTAAA		269	34	0.13	237	0	0		0	1	75	0	0.00			
KLHL30	377007	mdanderson.org	37	2	239050003	239050003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_198582	exon2	c.G608T	p.W203L	TGCGCTGGGTGCG		18	3	0.17	22	0	0				0	0				
CSRP2BP	57325	broad.mit.edu	37	20	18142572	18142572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	CSRP2BP,NS,carcinoma,0,3	CSRP2BP	NM_020536	exon5	c.G791T	p.R264L	GGTCTCGAACTCA		94	4	0.04	88	0	0		80	3	110	0	0.00			
AIRE	326	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	21	45716314	45716316	+	Missense_Mutation	TNP	TCC	TCC	GTT	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	TCC	TCC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_000383	exon13	c.C1554T	p.S518V	CTGGAGTCCCTTC		65	8	0.12	104	0	0				0	0				
LSS	4047	mdanderson.org	37	21	47642587	47642587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	LSS,colon,carcinoma,+1,1	LSS	NM_001145436	exon4	c.C385T	p.R129W	GGTACCGCACAAT		49	3	0.06	28	0	0		1	1	97	0	0.00			
THOC5	8563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29916094	29916094	+	Splice_Site	SNP	C	C	G	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001002877	exon16	c.1278-1G>C	.	AGGATGCTGCAGA		52	10	0.19	57	0	0				7	7	1.00			
APOBEC3B	9582	hgsc.bcm.edu	37	22	39382074	39382074	+	Silent	SNP	C	C	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	APOBEC3B,NS,carcinoma,+1,1	APOBEC3B	NM_004900	exon3	c.C432T	p.R144R	AGCCCGCGTGACG		37	3	0.08	43	0	0		1	1	12	0	0.00			
P4HTM	54681	broad.mit.edu	37	3	49042374	49042374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	P4HTM	NM_177938	exon6	c.G968T	p.G323V	AGGGGGGCCACTA		47	3	0.06	54	0	0		71		23	0	0.00			
RBM15B	29890	mdanderson.org	37	3	51429280	51429280	+	Silent	SNP	G	G	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_013286	exon1	c.G450T	p.L150L	CGCGCTGCCCGCC		16	3	0.19	19	0	0				36	0	0.00			
COPG1	22820	mdanderson.org	37	3	128979230	128979230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_016128	exon11	c.G926A	p.R309H	CTGTTCGTACCCT		39	3	0.08	44	0	0				213	0	0.00			
TBCCD1	55171	mdanderson.org	37	3	186272317	186272317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001134415	exon6	c.C1270A	p.P424T	GCATTGGGTAATG		56	3	0.05	78	0	0				78	0	0.00			
MFSD10	10227	mdanderson.org	37	4	2932979	2932979	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001146069	exon11	c.C1137A	p.C379X	GGACAGGCAGGGC		40	3	0.08	53	0	0				109	0	0.00			
BTC	685	mdanderson.org	37	4	75719476	75719476	+	Silent	SNP	G	G	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001729	exon1	c.C60A	p.A20A	ACCCAGGGCAAGG		31	3	0.10	42	0	0				0	0				
FAM198B	51313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	159092431	159092431	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_016613	exon2	c.A97T	p.R33W	GGGTCCTTGGACG		83	7	0.08	109	0	0				21	0	0.00			
ADCY2	108	broad.mit.edu;mdanderson.org	37	5	7396571	7396571	+	Silent	SNP	C	C	A	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	ADCY2	NM_020546	exon1	c.C162A	p.V54V	CATCGTCATGGGC		59	11	0.19	75	2	0.0266666667		337		0	0				
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	118469192	118469192	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_005509	exon12	c.T1573A	p.S525T	TAGGTGTCCTTTG		81	15	0.19	85	0	0				22	7	0.32			
SYCP2L	221711	mdanderson.org	37	6	10928665	10928665	+	Silent	SNP	T	T	C	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001040274	exon18	c.T1470C	p.P490P	GGTCCCTGACTTC		48	3	0.06	25	0	0				23	0	0.00			
NFKBIL1	4795	mdanderson.org	37	6	31525456	31525456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001144961	exon3	c.G386T	p.G129V	CCATGGGAATAAA		70	4	0.06	72	0	0				79	0	0.00			
GRM4	2914	broad.mit.edu	37	6	34101114	34101114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	GRM4	NM_001256811	exon2	c.C160A	p.L54M	GGAACAGGCCTCC		64	3	0.05	72	0	0		317		0	0				
PHKG1	5260	mdanderson.org	37	7	56148891	56148891	+	Silent	SNP	G	G	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001258459	exon11	c.C1116A	p.L372L	AGGCCGGAGGGCA		44	3	0.07	46	0	0				1	0	0.00			
GTF2IRD2P1	0	broad.mit.edu	37	7	72663998	72663998	+	RNA	SNP	T	T	G	rs2539034	bycluster	TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	.	.	.	.	CCGGGGTCCTTGA		100	3	0.03	112	1	0.0089285714				0	0				
HIP1	3092	mdanderson.org	37	7	75368221	75368221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001243198	exon1	c.C18A	p.S6R	CATGGAGCTGGCC		45	4	0.09	30	0	0				2	0	0.00			
.	0	bcgsc.ca	37	7	82219828	82219828	+	RNA	SNP	T	T	C	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	.	.	.	.	AGCTGGTTTCATA		59	6	0.10	56	0	0				0	0				
ZAN	7455	broad.mit.edu	37	7	100336500	100336502	+	RNA	DEL	CCC	CCC	-	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	CCC	CCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	ZAN	.	.	.	.	TCTTCTCCCTCTC		8	5	0.63	4	0	0		658		0	0				
AP1S1	1174	bcgsc.ca;mdanderson.org	37	7	100799986	100799986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	AP1S1	NM_001283	exon2	c.G115A	p.V39I	CAGGTTGTCCTGG		64	12	0.19	70	0	0		22		124	18	0.15			
ARFGEF1	10565	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68128855	68128855	+	Silent	SNP	T	T	A	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	ARFGEF1	NM_006421	exon33	c.A4656T	p.P1552P	TGGAGGTGGGGGG		243	28	0.12	211	3	0.0142180095		196		333	76	0.23			
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114132781	114132781	+	Silent	SNP	G	G	A	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_001080398	exon46	c.C5442T	p.I1814I	CTTCAAGATATCA		112	12	0.11	88	0	0				688	181	0.26			
ENG	2022	mdanderson.org	37	9	130588924	130588924	+	Missense_Mutation	SNP	G	G	A	rs199840979	bycluster;byfrequency	TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_000118	exon4	c.C388T	p.P130S	CCGGGGGCTCTTG		39	4	0.10	49	0	0	0.002			167	0	0.00			
RNR1	6052	hgsc.bcm.edu	37	MT	1282	1282	+	RNA	SNP	G	G	A	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	.	.	.	.	AACCCTGATGAAG		20	13	0.65	14	0	0				0	0				
CYBB	1536	mdanderson.org	37	X	37665737	37665737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	.	NM_000397	exon11	c.C1412T	p.A471V	ACAATGCCGGCTT		48	3	0.06	53	0	0				690	0	0.00			
PORCN	64840	broad.mit.edu	37	X	48370301	48370301	+	Silent	SNP	C	C	T	rs142038251		TCGA-XY-A89B-01A-11D-A435-10	TCGA-XY-A89B-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33cb241d-2efe-4922-af5a-389ea190a083	f478c02b-426c-4d7c-824f-ef1b8d222670	.	PORCN	NM_203475	exon3	c.C351T	p.T117T	AGACACCGTGACA		295	5	0.02	301	0	0		61		30	0	0.00			
