Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
C1orf170	0	broad.mit.edu	37	1	915369	915369	+	Silent	SNP	T	T	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	C1orf170	.	.	.	.	GGCAGGTGTAGAC		83	15	0.18	99	26	0.2626262626		5		0	0				
RERE	473	ucsc.edu;bcgsc.ca	37	1	8424850	8424850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	RERE	NM_012102	exon15	c.A1496G	p.E499G	TCCTGCTCACTGT		32	4	0.13	34	0	0		129		99	0	0.00			
PHACTR4	65979	broad.mit.edu	37	1	28793239	28793239	+	Silent	SNP	T	T	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	PHACTR4	NM_023923	exon5	c.T813C	p.P271P	TATCCCTCCCCCT		122	5	0.04	128	1	0.0078125		64		57	0	0.00			
FOXD2	2306	hgsc.bcm.edu;broad.mit.edu	37	1	47905268	47905268	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004474	exon1	c.1460delT	p.V487fs	CAAAGTCGCCGGC		144	13	0.09	90	0	0				1	0	0.00			
FOXD2	2306	hgsc.bcm.edu;broad.mit.edu	37	1	47905271	47905272	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004474	exon1	c.1464_1465insA	p.A488fs	AGTCGCCGGCCTT		155	10	0.06	98	0	0				0	0				
FOXD2	2306	hgsc.bcm.edu;broad.mit.edu	37	1	47905272	47905273	+	In_Frame_Ins	INS	-	-	CAAAGA	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004474	exon1	c.1465_1466insCAAAGA	p.G489delinsAKS	GTCGCCGGCCTTA		158	10	0.06	99	0	0				0	0				
ZCCHC11	23318	broad.mit.edu	37	1	52991402	52991403	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	ZCCHC11	NM_001009881	exon2	c.551_552insA	p.I184fs	CTTGGAATTTTTT		526	0	0.00	166	0	0		151		188	0	0.00			
ATP1A1	476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	116940526	116940526	+	Missense_Mutation	SNP	G	G	A	rs200285355		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	ATP1A1,NS,carcinoma,-2,1	ATP1A1	NM_000701	exon15	c.G1990A	p.V664I	GCCTGCGTAGTAC		51	9	0.18	48	0	0	0.001	-2	1	1540	144	0.09			
CD1C	911	broad.mit.edu	37	1	158261009	158261009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	CD1C	NM_001765	exon2	c.G147T	p.W49C	AGGATGGCTGGAC		174	4	0.02	198	0	0		100		1	0	0.00			
ZBTB37	84614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	173839876	173839876	+	Silent	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_032522	exon3	c.G513A	p.K171K	CCCAAAGGGAAAC		86	33	0.38	95	0	0				6	5	0.83			
MIR548F1	100302192	hgsc.bcm.edu	37	1	186134395	186134395	+	RNA	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	CACTAGGTATTTA		38	13	0.34	46	0	0				0	0				
OBSCN	84033	broad.mit.edu	37	1	228553857	228553857	+	Silent	SNP	C	C	T	rs187833194	bycluster;by1000genomes	TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	OBSCN	NM_001271223	exon94	c.C22017T	p.G7339G	TGAGGGCGACCCA		214	5	0.02	197	0	0		2142		1	0	0.00			
GNPAT	8443	mdanderson.org	37	1	231401776	231401776	+	Silent	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_014236	exon7	c.G789T	p.V263V	TATTGTGATGGAG		47	3	0.06	43	1	0.023255814				51	0	0.00			
HNRNPU-AS1	284702	hgsc.bcm.edu	37	1	245009836	245009836	+	RNA	SNP	A	A	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	AAAAATAGTCCAG		104	39	0.38	80	0	0				3	3	1.00			
DCLRE1C	64421	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	14976452	14976454	+	In_Frame_Del	DEL	ACA	ACA	-	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	ACA	ACA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001033855	exon8	c.604_606del	p.202_202del	AGCCACACAACAT		178	51	0.29	215	0	0				7	0	0.00			
FZD8	8325	mdanderson.org	37	10	35928341	35928341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_031866	exon1	c.C2017A	p.L673M	ACGTCAGGCCAGT		22	2	0.09	35	0	0				0	0				
SLIT1	6585	mdanderson.org	37	10	98791382	98791382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_003061	exon24	c.C2491A	p.L831I	AGCGGAGTCCCTG		42	3	0.07	65	0	0				4	0	0.00			
BLOC1S2	282991	mdanderson.org	37	10	102045950	102045950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_173809	exon2	c.G76A	p.A26T	CCTCAGCTGTCTC		33	3	0.09	66	0	0				106	0	0.00			
SMC3	9126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	112352948	112352948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_005445	exon18	c.C1930T	p.R644C	CTGGCCCGTGCTT		107	46	0.43	96	0	0				211	91	0.43			
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115349537	115349537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001261463	exon41	c.T4976C	p.L1659S	AGGTTCAAGTCTG		31	12	0.39	44	0	0				0	0				
TACC2	10579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123844801	123844801	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_206862	exon4	c.A2786T	p.E929V	TGACAGAAGAGTC		51	16	0.31	62	0	0				0	0				
MUC2	4583	mdanderson.org	37	11	1093324	1093324	+	Missense_Mutation	SNP	G	G	A	rs201143282		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	MUC2_ENST00000441003,uveal_tract,malignant_melanoma,0,2	MUC2_ENST00000441003	NM_002457	exon30	c.G5143A	p.G1715S	CCCACCGGCACAC		17	4	0.24	28	0	0		0	2	0	0				
BRSK2	9024	mdanderson.org	37	11	1475738	1475738	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001256630	exon16	c.G1706T	p.G569V	GGTTTGGGAACTT		40	3	0.08	83	0	0				24	0	0.00			
STIM1	6786	mdanderson.org	37	11	3877621	3877621	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_003156	exon1	c.G121T	p.E41X	AACTCTGAGGAGT		27	3	0.11	32	0	0				14	0	0.00			
ST5	6764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	8734259	8734259	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_005418	exon12	c.A2011C	p.I671L	ACTGGATGTGGAC		34	9	0.26	37	0	0				8	3	0.38			
BDNF	627	mdanderson.org	37	11	27681195	27681195	+	RNA	SNP	T	T	C	rs28405820		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	TGTGTGTGCGCGC		100	6	0.06	94	1	0.0106382979				0	0				
MED19	219541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57472453	57472453	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_153450	exon2	c.A466C	p.T156P	GGCCAGTGTGGAG		34	12	0.35	48	0	0				93	53	0.57			
SCGB1D2	10647	mdanderson.org	37	11	62012170	62012170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_006551	exon3	c.G272T	p.X91L	GTGTGTGACATGT		50	3	0.06	46	0	0				6	0	0.00			
ARAP1	116985	broad.mit.edu;mdanderson.org	37	11	72438118	72438118	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	ARAP1	NM_001040118	exon3	c.A56T	p.H19L	TCCAGGTGCAATG		31	3	0.10	43	0	0		168		37	5	0.14			
INTS4	92105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77612564	77612564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_033547	exon18	c.T2131C	p.Y711H	CACTGTACATGAA		132	43	0.33	136	0	0				53	26	0.49			
FAT3	120114	mdanderson.org	37	11	92088566	92088566	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001008781	exon1	c.G3288T	p.E1096D	CGACGAGAGTGGT		52	4	0.08	47	0	0				4	0	0.00			
EXPH5	23086	hgsc.bcm.edu	37	11	108384984	108384984	+	Nonsense_Mutation	SNP	G	G	T	rs115714924	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_015065	exon6	c.C1250A	p.S417X	TGGTACGATTCAT		96	4	0.04	97	0	0				0	0				
TMPRSS13	84000	mdanderson.org	37	11	117772964	117772964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001077263	exon13	c.G1694T	p.R565I	GATTTTCTGAATC		28	3	0.11	26	0	0				1	0	0.00			
DYRK4	8798	broad.mit.edu	37	12	4721824	4721824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	DYRK4	NM_003845	exon12	c.T1261C	p.F421L	AATTCCTTTTTCC		208	4	0.02	94	0	0		75		171	0	0.00			
GDF3	9573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	7848063	7848063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	GDF3,NS,malignant_melanoma,0,1	GDF3	NM_020634	exon1	c.G262T	p.D88Y	CTTGGTCTGGGAG		232	34	0.15	67	1	0.0149253731		0	1	5025	512	0.10			
.	0	broad.mit.edu	37	12	40590333	40590340	+	RNA	DEL	ACACACAG	ACACACAG	-	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	ACACACAG	ACACACAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	ACACACACACACA		25	11	0.44	13	0	0				0	0				
HOXC4	3221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	54448769	54448769	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_014620	exon4	c.C575A	p.S192X	CCCACTCGCTGTG		145	38	0.26	119	0	0				0	0				
PA2G4	5036	broad.mit.edu;mdanderson.org	37	12	56501389	56501389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	PA2G4	NM_006191	exon5	c.G478A	p.G160R	AAACCTGGAAATC		57	4	0.07	27	0	0		24		1437	7	0.00			
KNTC1	9735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123041970	123041970	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_014708	exon17	c.C1312G	p.L438V	GAGAAACTGGCAT		87	21	0.24	76	0	0				52	20	0.38			
RIMBP2	23504	mdanderson.org	37	12	130921452	130921452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_015347	exon10	c.G1990T	p.V664L	TGGACACCGGGGT		27	3	0.11	26	0	0				6	0	0.00			
POLE	5426	mdanderson.org	37	12	133218311	133218311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_006231	exon39	c.A5300G	p.E1767G	ATGTCCTCCAGGG		28	3	0.11	34	0	0				111	1	0.01			
.	0	broad.mit.edu	37	13	52855276	52855277	+	RNA	DEL	TG	TG	-	rs72183844	alternate_allele	TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	TGTGCTTGTGTGT		6	2	0.33	5	0	0				0	0				
CUL4A	8451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113897455	113897455	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001008895	exon11	c.C1209G	p.N403K	ACCCAACAAGCCT		64	18	0.28	68	0	0				108	55	0.51			
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45665475	45665475	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_020937	exon21	c.A5441T	p.E1814V	CGCAGGAAGGAAA		128	25	0.20	131	0	0				18	0	0.00			
CCDC88C	440193	mdanderson.org	37	14	91780051	91780051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001080414	exon15	c.C2109A	p.D703E	CTCTGCGTCCAGC		45	3	0.07	37	0	0				39	0	0.00			
SERPINA9	327657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94933616	94933616	+	Silent	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_175739	exon3	c.G786A	p.E262E	GAACTGCTCTTTC		68	14	0.21	73	0	0				0	0				
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105415680	105415680	+	Silent	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_138420	exon7	c.C6108A	p.L2036L	AATGCTGAGGTCA		68	36	0.53	85	0	0				1	0	0.00			
.	0	broad.mit.edu	37	14	106539317	106539317	+	RNA	SNP	T	T	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	GAGACCTTCACTG		160	3	0.02	180	0	0				229	0	0.00			
.	0	bcgsc.ca	37	15	20482111	20482111	+	RNA	SNP	G	G	A	rs11629632	bycluster;byhapmap;by1000genomes	TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	GTTCGCGGCCACT		20	5	0.25	20	0	0				0	0				
RYR3	6263	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	33895565	33895565	+	Splice_Site	SNP	G	G	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	RYR3	NM_001243996	exon18	c.G2164C	p.G722R	TGGTCAGGTGAGT		93	16	0.17	70	0	0		760		0	0				
FAM98B	283742	bcgsc.ca	37	15	38776809	38776809	+	Missense_Mutation	SNP	T	T	A	rs374461368		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	FAM98B	NM_173611	exon8	c.T1251A	p.G417G	AGGAGGTGGTGGT		109	6	0.06	80	1	0.0125		53		0	0				
RASGRP1	10125	broad.mit.edu	37	15	38800149	38800149	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	RASGRP1	NM_001128602	exon9	c.C1020A	p.Y340X	TCGCCGGTAATTG		108	3	0.03	90	0	0		50		10	0	0.00			
PLA2G4F	255189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42446574	42446574	+	Silent	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_213600	exon3	c.C267T	p.C89C	GTCACTGCAGTTG		72	10	0.14	51	0	0				4	1	0.25			
EID1	23741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49170473	49170473	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_014335	exon1	c.G100C	p.G34R	GAGGTAGGCAGCG		45	11	0.24	33	0	0				217	22	0.10			
EEF2K	29904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22268122	22268122	+	Silent	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_013302	exon7	c.C672T	p.P224P	CAAGCCCCTCTTC		57	21	0.37	75	0	0				23	15	0.65			
ARHGAP17	55114	mdanderson.org	37	16	24942406	24942406	+	Silent	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001006634	exon19	c.C2214A	p.P738P	TGCCATGGGGTTG		46	3	0.07	47	0	0				95	0	0.00			
PRSS36	146547	mdanderson.org	37	16	31159768	31159768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001258290	exon5	c.C501A	p.F167L	GTGCACGAAGCGG		9	6	0.67	8	0	0				0	0				
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72992565	72992565	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_006885	exon2	c.C1480G	p.L494V	GAAAGAGTCCTTT		79	33	0.42	85	0	0				1	0	0.00			
ELAC2	60528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	12921085	12921085	+	Silent	SNP	C	C	T	rs370459638		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001165962	exon1	c.G180A	p.L60L	CACCTGCAGGTAC		53	10	0.19	46	0	0				89	32	0.36			
TUBG2	27175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	40817522	40817522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_016437	exon7	c.G635A	p.R212Q	TGAACCGGATTGC		141	8	0.06	100	0	0				69	4	0.06			
NMT1	4836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	43173564	43173564	+	Silent	SNP	A	A	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	NMT1,NS,carcinoma,0,1	NMT1	NM_021079	exon5	c.A507T	p.L169L	ACAGCTAAAAGAA		101	16	0.16	76	0	0		0	1	182	47	0.26			
HEXIM1	0	broad.mit.edu	37	17	43229647	43229648	+	RNA	INS	-	-	A	rs141039553	bycluster;by1000genomes	TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	HEXIM1	.	.	.	.	TTTATTTTTTTTT		7	5	0.71	6	0	0		25		0	0				
LRRC37A2	474170	broad.mit.edu	37	17	44627781	44627781	+	Splice_Site	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	LRRC37A2	NM_001006607	exon10	c.C4705T	p.L1569F	TTTTAGCTCAAAA		203	9	0.04	151	3	0.0198675497		37		6	0	0.00			
EPN3	55040	mdanderson.org	37	17	48614207	48614207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	EPN3,mouth,carcinoma,0,1	EPN3	NM_017957	exon2	c.G290T	p.R97L	AGTGCCGCGAGAA		53	3	0.06	43	0	0		0	1	1	0	0.00			
SPAG9	9043	ucsc.edu	37	17	49124780	49124780	+	Silent	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	SPAG9	NM_001130528	exon4	c.C546T	p.L182L	CCCTGAGAGCTGA		36	4	0.11	37	0	0		151		43	0	0.00			
MKS1	54903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56293605	56293605	+	Splice_Site	SNP	C	C	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001165927	exon5	c.232-1G>C	.	TTCAAACTGAGGT		40	11	0.28	35	0	0				0	0				
MARCH10	162333	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	60814457	60814457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	MARCH10	NM_001100875	exon6	c.C772A	p.P258T	TGGTGGGTGTGAG		168	46	0.27	180	1	0.0055555556		102		0	0				
GPS1	2873	mdanderson.org	37	17	80012851	80012851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_212492	exon5	c.G807T	p.E269D	TGCCGAGGTACGG		50	3	0.06	52	0	0				542	0	0.00			
NAPG	8774	mdanderson.org	37	18	10526105	10526105	+	Silent	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	NAPG,NS,carcinoma,+2,1	NAPG	NM_003826	exon1	c.G6T	p.A2A	GATGGCGGCTCAG		27	3	0.11	41	0	0		2	1	35	0	0.00			
NEDD4L	23327	bcgsc.ca	37	18	56057876	56057876	+	Splice_Site	SNP	A	A	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	NEDD4L	NM_015277	exon28	c.2596-2A>G	.	GTTCATAGGCTGT		60	4	0.07	82	0	0		126		1	0	0.00			
ZNF516	9658	broad.mit.edu	37	18	74154244	74154244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	ZNF516,NS,carcinoma,0,2	ZNF516	NM_014643	exon3	c.C767A	p.A256D	CTGAAGGCCTGGC		50	6	0.12	65	0	0		102	2	15	1	0.07			
POLRMT	5442	mdanderson.org	37	19	619021	619021	+	Silent	SNP	G	G	T	rs14155	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	POLRMT,colon,carcinoma,0,2	POLRMT	NM_005035	exon15	c.C3243A	p.P1081P	GCGATAGGGCTGG		73	3	0.04	69	0	0		0	2	86	0	0.00			
PCSK4	54760	mdanderson.org	37	19	1482101	1482101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_017573	exon15	c.C1925T	p.A642V	GGCGCCGCCGTGT		12	2	0.17	12	0	0				22	0	0.00			
LONP1	9361	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	5696679	5696690	+	In_Frame_Del	DEL	ACCTCGTCGATG	ACCTCGTCGATG	-	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	ACCTCGTCGATG	ACCTCGTCGATG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004793	exon11	c.1765_1773del	p.589_591del	GCACGCACCTCGT		37	10	0.27	57	0	0				5	0	0.00			
ZNF358	140467	mdanderson.org	37	19	7585369	7585369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_018083	exon2	c.C1241T	p.A414V	CAGCAGCGGCCGC		29	2	0.07	27	0	0				15	0	0.00			
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15284960	15284960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_000435	exon25	c.A4655G	p.Q1552R	ATGGCCTGGCCGT		25	9	0.36	31	0	0				63	25	0.40			
.	0	bcgsc.ca	37	19	22868586	22868586	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	TACACATAAGAGA		169	61	0.36	183	0	0				10	4	0.40			
SLC7A9	11136	mdanderson.org	37	19	33353095	33353095	+	Missense_Mutation	SNP	G	G	T	rs372980958	alternate_allele	TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	SLC7A9,NS,carcinoma,0,2	SLC7A9	NM_001243036	exon6	c.C633A	p.F211L	GCCCTCGAAAGAA		29	3	0.10	34	0	0		0	2	1	0	0.00			
SIPA1L3	23094	broad.mit.edu	37	19	38684282	38684282	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	SIPA1L3	NM_015073	exon18	c.4702delC	p.P1568fs	GGGCTGCCCAGCG		6	2	0.33	9	0	0		150		5	0	0.00			
B3GNT8	374907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41932344	41932344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_198540	exon3	c.G340A	p.D114N	GGAGGTCCTTGGG		49	23	0.47	54	0	0				3	2	0.67			
ARHGAP35	2909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47422321	47422321	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004491	exon1	c.A389T	p.K130I	CTGAAAAACTCAT		77	25	0.32	91	0	0				18	7	0.39			
TRPM4	54795	mdanderson.org	37	19	49699839	49699839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_017636	exon17	c.G2353T	p.G785C	TTCATGGGCAACG		12	2	0.17	13	0	0				2	0	0.00			
RPL13A	23521	mdanderson.org	37	19	49994344	49994344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_012423	exon6	c.G390T	p.K130N	TCTGAAGCCTACA		35	3	0.09	33	0	0				2619	0	0.00			
KCNC3	3748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50826601	50826601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004977	exon2	c.G1609T	p.V537F	CAATGACGGGCAC		41	12	0.29	43	0	0				3	1	0.33			
ACOXL	55289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	111556598	111556598	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001142807	exon7	c.C468G	p.H156Q	GCCCCACTGTTTC		121	24	0.20	94	0	0				64	20	0.31			
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152486121	152486121	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001271208	exon68	c.G9763C	p.G3255R	CGTAGCCTTTCTT		94	19	0.20	77	0	0				9	4	0.44			
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162751205	162751205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001178015	exon11	c.C1211T	p.A404V	ATGTTGCCTATAA		105	27	0.26	86	0	0				0	0				
ABCB11	8647	mdanderson.org	37	2	169787208	169787208	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_003742	exon25	c.G3378C	p.L1126F	ACGTTCCAACAGC		70	5	0.07	74	0	0				0	0				
DLX2	1746	broad.mit.edu	37	2	172965287	172965287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	DLX2	NM_004405	exon3	c.C971A	p.A324E	GTCCCCGCGCTCA		70	3	0.04	36	0	0		29		1	0	0.00			
HECW2	57520	mdanderson.org	37	2	197084819	197084819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_020760	exon26	c.C4352A	p.A1451E	GTGCCTGCGATGA		47	3	0.06	38	0	0				9	0	0.00			
SP140	11262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	231174675	231174675	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_007237	exon23	c.G2095T	p.G699X	CGGGACGGAGGGG		204	50	0.25	186	0	0				16	0	0.00			
FAM182A	284800	hgsc.bcm.edu	37	20	26062141	26062141	+	RNA	SNP	G	G	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	GGCGCAGCCCTGG		76	5	0.07	85	0	0				1	0	0.00			
NECAB3	63941	mdanderson.org	37	20	32247754	32247754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_031231	exon7	c.G580A	p.G194R	GGCGTCCTGCCCG		30	3	0.10	22	0	0				26	0	0.00			
ZMYND8	23613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45905062	45905062	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	ZMYND8_ENST00000536340,NS,carcinoma,-2,2	ZMYND8_ENST00000536340	NM_183047	exon11	c.C1476G	p.S492R	ACCTGTGCTCTTA		37	10	0.27	28	0	0		-2	2	171	65	0.38			
CYP24A1	1591	ucsc.edu;bcgsc.ca;mdanderson.org	37	20	52789455	52789455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	CYP24A1	NM_000782	exon2	c.C442A	p.L148M	GGATCAGCAGCCC		43	4	0.09	53	0	0		75		0	0				
BAGE2	85319	broad.mit.edu	37	21	11050075	11050077	+	RNA	DEL	GTT	GTT	-	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	GTT	GTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	AGAAACGTTAATA		6	2	0.33	5	0	0				0	0				
ANKRD30BP2	0	broad.mit.edu	37	21	14415103	14415103	+	RNA	SNP	C	C	G	rs369320513	bycluster	TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	CAGGCTCTGCAAT		28	5	0.18	22	0	0				0	0				
ANKRD30BP2	0	broad.mit.edu	37	21	14415122	14415122	+	RNA	SNP	C	C	T	rs373171837	bycluster	TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	GGGAGGCTTGTGC		21	4	0.19	15	0	0				0	0				
ITGB2	3689	mdanderson.org	37	21	46311735	46311735	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_000211	exon11	c.C1401A	p.C467X	GATGCCGCACTCC		22	2	0.09	30	0	0				151	0	0.00			
ZNF280B	140883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22842853	22842853	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_080764	exon4	c.G871C	p.G291R	GCTGTCCATAGTA		64	22	0.34	80	0	0				14	7	0.50			
SLC2A11	66035	mdanderson.org	37	22	24224967	24224967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_030807	exon9	c.G916T	p.V306L	TCCTCCGTGTTCC		43	3	0.07	44	0	0				6	0	0.00			
MN1	4330	mdanderson.org	37	22	28196364	28196364	+	Silent	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_002430	exon1	c.C168A	p.G56G	GGGTTCGCCCAGC		36	3	0.08	40	0	0				16	0	0.00			
CAPN7	23473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	15274030	15274030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_014296	exon10	c.T1037C	p.I346T	AGGTGATAATTGA		61	16	0.26	90	0	0				12	7	0.58			
MLH1	4292	mdanderson.org	37	3	37050329	37050329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_000249	exon6	c.G478T	p.A160S	AACATAGCCACGA		47	3	0.06	66	0	0				40	0	0.00			
LAMB2	3913	mdanderson.org	37	3	49167754	49167754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	LAMB2,NS,carcinoma,0,1	LAMB2	NM_002292	exon9	c.C1135A	p.H379N	TGTTATGCTGACA		124	5	0.04	86	0	0		0	1	30	0	0.00			
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52492745	52492745	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001276293	exon3	c.G245C	p.R82T	ACTCAAGAAGCTT		152	37	0.24	87	0	0				70	19	0.27			
WFS1	7466	broad.mit.edu	37	4	6296878	6296878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	WFS1	NM_001145853	exon7	c.G823T	p.A275S	GAGCTGGCGGGGA		32	3	0.09	53	0	0		71		22	0	0.00			
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	48597656	48597656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_015030	exon15	c.G1199A	p.R400H	GTGTCACGAGGAA		203	75	0.37	253	0	0				11	4	0.36			
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37044488	37044488	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	NIPBL_ENST00000448238,neck,malignant_melanoma,-2,2	NIPBL_ENST00000448238	NM_015384	exon35	c.A6148T	p.I2050F	GCAAAAATCCTAG		133	54	0.41	159	0	0		-2	2	115	58	0.50			
EGFLAM	133584	mdanderson.org	37	5	38427181	38427181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001205301	exon14	c.G1881T	p.E627D	ACTGGAGCCCCAG		33	3	0.09	74	0	0				10	0	0.00			
SEMA6A	57556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115837930	115837930	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_020796	exon3	c.A194T	p.N65I	GTTCCGTTCATGA		147	22	0.15	186	0	0				246	79	0.32			
AFF4	27125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	132232477	132232479	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	CTT	CTT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_014423	exon11	c.1844_1846del	p.615_616del	AGACTCCTTCTTT		105	38	0.36	136	0	0				64	0	0.00			
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137762705	137762705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_016604	exon18	c.C4453T	p.L1485F	CTCAAACTCAAGG		61	17	0.28	77	0	0				245	108	0.44			
TNIP1	10318	mdanderson.org	37	5	150444639	150444639	+	Silent	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001252385	exon2	c.G18A	p.P6P	CCGGTACGGTCCT		39	3	0.08	60	0	0				48	0	0.00			
DOK3	79930	hgsc.bcm.edu;bcgsc.ca	37	5	176936846	176936848	+	In_Frame_Del	DEL	CGA	CGA	-	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	CGA	CGA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_024872	exon1	c.7_9del	p.3_3del	GCTCCCCGAGTCA		42	14	0.33	66	0	0				0	0				
WRNIP1	56897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	2770515	2770515	+	Silent	SNP	G	G	A	rs148604433		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_020135	exon3	c.G1176A	p.A392A	GCGAGCGATCAAC		100	6	0.06	89	0	0	0			214	14	0.07			
HIST1H2AD	3013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	26199104	26199105	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	CT	CT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_021065	exon1	c.368_369del	p.123_123del	TGGTGACTCTCAG		260	73	0.28	249	0	0				1	0	0.00			
BTN2A3P	0	broad.mit.edu	37	6	26422353	26422353	+	RNA	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	BTN2A3,NS,carcinoma,0,9	.	.	.	.	.	ATGGAACCAGCTG		90	5	0.06	66	2	0.0303030303			9	4	0	0.00			
HIST1H3H	8357	broad.mit.edu	37	6	27777859	27777859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	HIST1H3H	NM_003536	exon1	c.G8A	p.R3H	TGGCGCGTACGAA		93	4	0.04	78	1	0.0128205128		25		2	0	0.00			
HIST1H1B	3009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27834706	27834706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_005322	exon1	c.C602T	p.A201V	GGCTTTGCCGCCT		148	31	0.21	113	0	0				1	0	0.00			
PPP1R18	170954	broad.mit.edu	37	6	30652190	30652190	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001134870	exon2	c.A1606T	p.K536X	CCTGTTTGTGGTG		130	26	0.20	101	1	0.0099009901				89	4	0.04			
TJAP1	93643	mdanderson.org	37	6	43473096	43473096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001146017	exon10	c.G1177A	p.A393T	AGCCCAGCACCCC		19	2	0.11	16	0	0				121	0	0.00			
VEGFA	7422	mdanderson.org	37	6	43738965	43738965	+	Silent	SNP	C	C	T	rs370465512	alternate_allele	TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001204385	exon1	c.C522T	p.P174P	CGGCCCCGGTCGG		27	3	0.11	15	0	0				39	0	0.00			
KIAA1009	22832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	84862439	84862439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_014895	exon23	c.G3454A	p.G1152R	GGGTTCCAGGGAA		141	8	0.06	149	0	0				11	0	0.00			
ABCB5	340273	broad.mit.edu	37	7	20687234	20687234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	ABCB5	NM_001163941	exon10	c.G1058A	p.R353Q	TAGCCCGAGGAGC		155	4	0.03	87	0	0		357		0	0				
SP4	6671	broad.mit.edu	37	7	21468306	21468306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	SP4,colon,carcinoma,0,1	SP4	NM_003112	exon2	c.G19A	p.E7K	AAGAAGGAGGAGG		63	4	0.06	39	1	0.0256410256		91	1	8	0	0.00			
STK31	56164	bcgsc.ca;mdanderson.org	37	7	23776556	23776556	+	Silent	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	STK31	NM_031414	exon8	c.G876T	p.G292G	TTTAGGGTCTAAC		87	5	0.06	60	0	0		175		2	0	0.00			
FAM188B	84182	mdanderson.org	37	7	30868345	30868345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_032222	exon6	c.T1124C	p.L375P	GTGCCCTGCGGCT		47	3	0.06	23	0	0				11	0	0.00			
CCT6P1	0	broad.mit.edu	37	7	65222986	65222986	+	RNA	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	TCTGGCGTTTTTT		40	3	0.08	13	0	0				48	0	0.00			
OR2AE1	81392	mdanderson.org	37	7	99474221	99474221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001005276	exon1	c.G436A	p.V146I	ACATGACAGCCAT		48	3	0.06	36	0	0				1	0	0.00			
ZC3HC1	51530	broad.mit.edu	37	7	129664141	129664141	+	Silent	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	ZC3HC1	NM_016478	exon7	c.C982A	p.R328R	GGCTCCGGGTCAT		67	3	0.04	49	0	0		45		182	0	0.00			
ZNF862	643641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149545019	149545019	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_001099220	exon4	c.A437C	p.Q146P	TTGTGCAGTTTCC		109	14	0.13	72	0	0				5	0	0.00			
ABCF2	10061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150912779	150912779	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_005692	exon13	c.G1441C	p.E481Q	TGTACTCCAAAGG		187	24	0.13	115	0	0				266	50	0.19			
CHPF2	54480	broad.mit.edu	37	7	150931207	150931207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	CHPF2,bladder,carcinoma,0,1	CHPF2	NM_019015	exon1	c.A110G	p.E37G	AGGGGGAGGGAGA		139	5	0.04	99	1	0.0101010101		52	1	84	0	0.00			
CDCA2	157313	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	25344851	25344851	+	Splice_Site	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_152562	exon12	c.1533+1G>A	.	AGAAATGTAAGTG		70	9	0.13	78	0	0				0	0				
VPS13B	157680	broad.mit.edu;mdanderson.org	37	8	100523425	100523425	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	VPS13B	NM_017890	exon29	c.T4393G	p.L1465V	CACAAGTTAACAT		72	4	0.06	106	0	0		811		4	0	0.00			
COL14A1	7373	broad.mit.edu	37	8	121322273	121322273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	COL14A1	NM_021110	exon37	c.A4427G	p.K1476R	GACCAAAGGGCCA		104	3	0.03	97	0	0		292		105	0	0.00			
DENND4C	55667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19346326	19346326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_017925	exon22	c.C3412T	p.L1138F	CAAGAACTCCTTG		90	28	0.31	65	0	0				45	13	0.29			
MELK	9833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	36657333	36657333	+	Silent	SNP	A	A	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	MELK,right_lower_lobe,carcinoma,+2,1	MELK	NM_014791	exon13	c.A1149C	p.T383T	ATCAACAGGTGCT		106	32	0.30	71	0	0		2	1	110	43	0.39			
LOC642236	0	bcgsc.ca	37	9	68427863	68427863	+	RNA	SNP	T	T	C	rs144877320	bycluster	TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	AGTCATTTGCAGT		267	16	0.06	214	4	0.0186915888				38	12	0.32			
TRAF2	7186	mdanderson.org	37	9	139811054	139811054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_021138	exon7	c.G665A	p.G222D	CCATCGGCTGCCT		31	3	0.10	35	0	0				66	0	0.00			
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	31950249	31950249	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_004006	exon46	c.C6710G	p.P2237R	TCAAGTGGGATAC		76	14	0.18	68	0	0				0	0				
ZXDA	7789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	57936054	57936054	+	Silent	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_007156	exon1	c.C801T	p.Y267Y	GCACAGGTACAGC		68	24	0.35	68	0	0				2	2	1.00			
BCYRN1	618	hgsc.bcm.edu	37	X	70890401	70890401	+	RNA	SNP	G	G	T	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	.	.	.	.	GAGAACGGGGAGA		55	24	0.44	35	0	0				0	0				
SASH3	54440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	128925040	128925040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_018990	exon4	c.G425A	p.S142N	TGCTCAGCCGCCA		233	100	0.43	189	0	0				18	0	0.00			
GPC3	2719	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	133119396	133119396	+	Silent	SNP	C	C	G	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	GPC3	NM_001164617	exon1	c.G81C	p.P27P	CGGCGGCGGGGGC		151	7	0.05	110	2	0.0181818182		88		32	0	0.00			
MAGEC1	9947	broad.mit.edu	37	X	140994639	140994641	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	CTC	CTC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	MAGEC1	NM_005462	exon4	c.1449_1451del	p.483_484del	TGTGAGCTCCTCC		197	8	0.04	158	0	0		317		0	0				
HMGB3	3149	mdanderson.org	37	X	150156360	150156360	+	Silent	SNP	G	G	A	novel		TCGA-XY-A8S2-01A-11D-A435-10	TCGA-XY-A8S2-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	63bb0810-bd3e-4f54-bd20-4b016522d054	a7a967d7-1710-4c00-93cf-9d80cebc0e56	.	.	NM_005342	exon5	c.G576A	p.E192E	AGAAGAGGAGGAG		24	2	0.08	11	0	0				196	2	0.01			
