Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
MAN1C1	57134	mdanderson.org	37	1	25944310	25944310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_020379	exon1	c.G22T	p.G8C	GTGCCCGGCTTCG		46	3	0.07	55	0	0				111	0	0.00			
MAP3K6	9064	broad.mit.edu;ucsc.edu	37	1	27686379	27686379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	MAP3K6	NM_004672	exon17	c.C2289A	p.H763Q	GTTGTCGTGCAAG		80	11	0.14	86	1	0.011627907		134		16	0	0.00			
PRPF38B	55119	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	109242141	109242142	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	PRPF38B,colon,carcinoma,0,1	PRPF38B	NM_018061	exon6	c.1139_1140del	p.380_380del	AGAAAAAGAGAGA		81	23	0.28	94	0	0		55		193	0	0.00			
NBPF16	728936	hgsc.bcm.edu	37	1	148579688	148579688	+	Silent	SNP	C	C	G	rs202153254	bycluster	TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	NBPF15,face,carcinoma,+2,1	NBPF15	NM_001102663	exon3	c.C258G	p.L86L	GCAGCTCAAGCAA		32	4	0.13	33	0	0	0.001	2	1	8	0	0.00			
TSACC	128229	broad.mit.edu	37	1	156314421	156314421	+	Missense_Mutation	SNP	T	T	C	rs149637850	bycluster;byfrequency;alternate_allele	TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_144627	exon3	c.T85C	p.S29P	AAACCCTCCCCCA		75	8	0.11	91	3	0.032967033				23	0	0.00			
OR6K6	128371	broad.mit.edu	37	1	158725536	158725536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	OR6K6	NM_001005184	exon1	c.T931C	p.F311L	GCTCCCTTTTTCA		168	4	0.02	174	0	0		81		0	0				
FMN2	56776	broad.mit.edu	37	1	240371139	240371139	+	Silent	SNP	C	C	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	FMN2	NM_020066	exon5	c.C3027T	p.P1009P	CATACCCCCTCCT		103	5	0.05	101	1	0.0099009901		451		0	0				
ZNF485	220992	mdanderson.org	37	10	44112810	44112810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_145312	exon5	c.G1319T	p.C440F	TGAAATGTAGTTA		16	2	0.13	33	0	0				7	0	0.00			
ANK3	288	mdanderson.org	37	10	61815794	61815794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	ANK3_ENST00000355288,NS,carcinoma,0,2	ANK3_ENST00000355288	NM_020987	exon42	c.C12687A	p.S4229R	GTCAGGGCTGCAA		22	3	0.14	41	0	0		0	2	17	0	0.00			
JAKMIP3	282973	mdanderson.org	37	10	133955460	133955460	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001105521	exon10	c.C1510T	p.Q504X	TTCCGGCAGCTGA		34	3	0.09	44	0	0				0	0				
ZNF511	118472	mdanderson.org	37	10	135123706	135123706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_145806	exon4	c.G468T	p.K156N	GTTCAAGACCAGC		28	3	0.11	95	0	0				130	0	0.00			
CALY	50632	mdanderson.org	37	10	135141480	135141480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_015722	exon3	c.C175A	p.P59T	GGTCTGGGGAGGA		44	3	0.07	118	0	0				0	0				
ARNTL	406	mdanderson.org	37	11	13407273	13407273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001178	exon19	c.G1652T	p.G551V	CCAGTGGCCTACT		43	3	0.07	47	0	0				30	0	0.00			
NRXN2	9379	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	64375421	64375421	+	Silent	SNP	C	C	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_015080	exon23	c.G4386A	p.T1462T	GGGCAGCGTGTCT		14	13	0.93	8	0	0				1	1	1.00			
ATG2A	23130	mdanderson.org	37	11	64680578	64680578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_015104	exon6	c.G757A	p.G253S	AGCTGCCGATCTG		41	3	0.07	59	0	0				14	0	0.00			
KLHL35	283212	mdanderson.org	37	11	75139524	75139524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001039548	exon2	c.C1029A	p.F343L	GGCGGCGAATTCT		16	3	0.19	21	0	0				25	0	0.00			
NAALAD2	10003	broad.mit.edu;mdanderson.org	37	11	89891357	89891357	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	NAALAD2,NS,carcinoma,0,2	NAALAD2	NM_005467	exon7	c.C841T	p.R281X	ATCCCCCGAATAC		88	4	0.05	99	0	0		113	2	28	0	0.00			
FAT3	120114	mdanderson.org	37	11	92616362	92616362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001008781	exon23	c.G12740T	p.S4247I	CCAGGAGCAACCT		33	3	0.09	48	0	0				0	0				
MLL	4297	broad.mit.edu	37	11	118391583	118391583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	MLL	NM_001197104	exon34	c.G11496T	p.E3832D	TAAGGAGGCAGTT		262	5	0.02	373	0	0		548		13	0	0.00			
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88524340	88524340	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_025114	exon8	c.C498G	p.N166K	ACGTTTGTTCTAC		65	14	0.22	51	0	0				1	0	0.00			
MIR548F5	100302239	mdanderson.org	37	13	36050879	36050879	+	RNA	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	.	.	.	.	CAGGCGGGCGGCC		47	3	0.06	96	0	0				0	0				
NDFIP2	54602	mdanderson.org	37	13	80055401	80055401	+	Silent	SNP	C	C	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_019080	exon1	c.C63T	p.R21R	CGCGCGCGGCGCC		14	2	0.14	13	0	0				1	0	0.00			
.	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	106320477	106320477	+	RNA	SNP	T	T	C	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	.	.	.	.	CGGACATGACCAG		141	17	0.12	131	0	0				21	0	0.00			
CHEK2P2	0	broad.mit.edu	37	15	20488769	20488770	+	RNA	DNP	CA	CA	TG	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	CA	CA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	.	.	.	.	GCACTCCAAGATT		453	13	0.03	531	0	0				25	0	0.00			
WHAMMP3	0	broad.mit.edu	37	15	23200539	23200540	+	RNA	INS	-	-	C	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	.	.	.	.	TTATTAATTTTTT		23	8	0.35	16	0	0				0	0				
CILP	8483	mdanderson.org	37	15	65496896	65496896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_003613	exon6	c.G629A	p.G210D	ACCTGGCCCATTG		37	3	0.08	59	0	0				0	0				
TCEB2	6923	ucsc.edu	37	16	2825543	2825543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	TCEB2	NM_007108	exon3	c.G153A	p.L51L	ATCATCCAAGAGT		35	4	0.11	21	0	0		6		3290	0	0.00			
NUDT16L1	84309	mdanderson.org	37	16	4743826	4743826	+	Silent	SNP	C	C	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001193452	exon1	c.C99T	p.Y33Y	GCTGTACGCCGCC		26	3	0.12	20	0	0				80	0	0.00			
PHKG2	5261	mdanderson.org	37	16	30764793	30764793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	PHKG2_ENST00000328273,colon,carcinoma,+2,1	PHKG2_ENST00000328273	NM_001172432	exon6	c.G471T	p.E157D	GCCCGAGAATATT		74	4	0.05	72	0	0		2	1	210	0	0.00			
ZNF646	9726	broad.mit.edu	37	16	31092943	31092943	+	Silent	SNP	T	T	C	rs200049061	bycluster	TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	ZNF646	NM_014699	exon2	c.T5298C	p.C1766C	CCATTGTCCCCGC		55	32	0.58	50	22	0.44		133		62	9	0.15			
.	0	bcgsc.ca	37	16	32403388	32403388	+	RNA	SNP	C	C	A	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	.	.	.	.	TTGAGACATTTGA		116	5	0.04	122	0	0				0	0				
MYBBP1A	10514	mdanderson.org	37	17	4443182	4443182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_014520	exon26	c.A3515G	p.K1172R	AATCCCTTTTTCT		23	2	0.09	25	0	0				451	0	0.00			
LRRC37BP1	0	broad.mit.edu	37	17	28960991	28960991	+	RNA	DEL	C	C	-	rs10561703	alternate_allele	TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	.	.	.	.	TTTTTTCTTTTTT		98	16	0.16	72	0	0				1	0	0.00			
UBE2O	63893	mdanderson.org	37	17	74449144	74449144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_022066	exon1	c.C80A	p.A27D	GCTGGGGCCGGGA		16	2	0.13	11	0	0				3	0	0.00			
GALR1	2587	mdanderson.org	37	18	74962916	74962916	+	Missense_Mutation	SNP	G	G	T	rs375468486	alternate_allele	TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001480	exon1	c.G412T	p.V138L	GCCATCGTGCACT		12	2	0.17	29	0	0				0	0				
AKAP8L	26993	mdanderson.org	37	19	15510124	15510124	+	Silent	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_014371	exon9	c.C1146A	p.R382R	CACCATGCGGTCT		77	4	0.05	55	0	0				301	0	0.00			
CAPNS1	826	mdanderson.org	37	19	36632054	36632054	+	Silent	SNP	C	C	T	rs17879825		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001749	exon2	c.C141T	p.G47G	CGGCGGCGGTGGT		32	4	0.13	56	2	0.0357142857	0.006			1	0	0.00			
PSMC4	5704	mdanderson.org	37	19	40485823	40485823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	PSMC4,NS,carcinoma,-1,2	PSMC4	NM_006503	exon7	c.C773T	p.A258V	AGAATGCACCTGC		65	4	0.06	106	0	0		-1	2	1276	1	0.00			
FOXA3	3171	mdanderson.org	37	19	46375770	46375770	+	Silent	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_004497	exon2	c.G507T	p.L169L	CTCGCTGTCTTTC		36	3	0.08	68	0	0				21	0	0.00			
ANKRD36	375248	hgsc.bcm.edu	37	2	97853095	97853095	+	Silent	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	ANKRD36_ENST00000420699,NS,carcinoma,0,4	ANKRD36_ENST00000420699	NM_001164315	exon32	c.G2100T	p.S700S	TGTTTCGAATATA		74	4	0.05	89	0	0		0	4	0	0				
SIGLEC1	6614	mdanderson.org	37	20	3677793	3677793	+	Silent	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	SIGLEC1_ENST00000202578,NS,carcinoma,-2,2	SIGLEC1_ENST00000202578	NM_023068	exon9	c.C2319A	p.A773A	GCGGCAGGCGTAA		49	3	0.06	62	0	0		-2	2	12	0	0.00			
TCEA2	6919	mdanderson.org	37	20	62701155	62701155	+	Silent	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_003195	exon6	c.G498T	p.L166L	GCGCCTGTCGGCT		44	3	0.07	48	0	0				114	0	0.00			
COL6A1	1291	mdanderson.org	37	21	47421228	47421228	+	Silent	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	COL6A1,colon,carcinoma,0,1	COL6A1	NM_001848	exon30	c.G1884T	p.L628L	TGGCCTGCAGAAC		42	3	0.07	25	0	0		0	1	406	0	0.00			
MN1	4330	mdanderson.org	37	22	28194894	28194894	+	Silent	SNP	C	C	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_002430	exon1	c.G1638A	p.Q546Q	CTGCTGCTGCTGT		19	3	0.16	30	0	0				5	0	0.00			
MN1	4330	broad.mit.edu	37	22	28194910	28194912	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	TGT	TGT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	MN1	NM_002430	exon1	c.1620_1622del	p.540_541del	TGTTGCTGTTGCT		26	7	0.27	31	0	0		122		10	0	0.00			
PLXNB2	23654	bcgsc.ca	37	22	50722618	50722618	+	Missense_Mutation	SNP	G	G	T	rs372542578		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	PLXNB2	NM_012401	exon13	c.C2206A	p.L736M	GGGGCAGCGTCTC		44	4	0.09	63	0	0		172		55	0	0.00			
TAMM41	132001	mdanderson.org	37	3	11871318	11871318	+	Missense_Mutation	SNP	G	G	T	rs144979072	bycluster;by1000genomes;alternate_allele	TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_138807	exon4	c.C432A	p.N144K	ATCCTCGTTCACT		35	3	0.09	34	0	0				66	0	0.00			
NEK10	152110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	27326130	27326130	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	NEK10_ENST00000429845,NS,lymphoid_neoplasm,0,3	NEK10_ENST00000429845	NM_199347	exon23	c.C1977G	p.N659K	AATGTTGTTTGGT		111	27	0.24	73	0	0		0	3	1	0	0.00			
BSN	8927	mdanderson.org	37	3	49691578	49691578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_003458	exon5	c.T4589C	p.V1530A	CTATGGTAGCCCA		45	3	0.07	50	0	0				7	0	0.00			
.	0	broad.mit.edu	37	3	106824709	106824709	+	RNA	DEL	C	C	-	rs57565986	bycluster;alternate_allele	TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	.	.	.	.	TTATATCTTTTTT		8	3	0.38	7	0	0				0	0				
FAM86JP	0	broad.mit.edu	37	3	125637503	125637510	+	RNA	DEL	AGTCTTCT	AGTCTTCT	-	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	AGTCTTCT	AGTCTTCT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	.	.	.	.	AGAGTCAGTCTTC		7	4	0.57	7	0	0				0	0				
IGSF10	285313	mdanderson.org	37	3	151166918	151166918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_178822	exon4	c.T851C	p.I284T	GAGTCAATGGTTG		58	3	0.05	92	0	0				0	0				
TTC14	151613	mdanderson.org	37	3	180320160	180320160	+	Silent	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001042601	exon1	c.G111T	p.S37S	GGGGTCGGCCGCC		38	3	0.08	30	0	0				11	0	0.00			
PAPD4	167153	mdanderson.org	37	5	78919198	78919198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001114393	exon5	c.G351T	p.M117I	CTCAATGCCACCA		47	3	0.06	83	0	0				32	0	0.00			
NR3C1	2908	bcgsc.ca	37	5	142779960	142779960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	NR3C1	NM_001018077	exon2	c.G445A	p.A149T	GGGCAGCAGACAC		82	5	0.06	130	1	0.0076923077		124		1	0	0.00			
ARHGEF37	389337	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	5	149008389	149008389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_001001669	exon12	c.C1678T	p.P560S	TATGTGCCGGCTG		67	5	0.07	64	0	0				2	0	0.00			
SERPINB6	5269	bcgsc.ca;mdanderson.org	37	6	2955761	2955761	+	Silent	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	SERPINB6	NM_001271823	exon3	c.C366A	p.L122L	TACTGAGAGGAAA		78	5	0.06	67	0	0		31		380	0	0.00			
TREML4	285852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41196569	41196569	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_198153	exon2	c.A181T	p.S61C	TCTCCAAGTCGGT		68	23	0.34	66	0	0				0	0				
ECT2L	345930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	139175243	139175245	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	GAA	GAA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	ECT2L	NM_001195037	exon9	c.1149_1151del	p.383_384del	GCCACTGAAGAAG		49	15	0.31	88	0	0		75		0	0				
SYTL3	94120	broad.mit.edu	37	6	159183173	159183173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	SYTL3	NM_001242384	exon17	c.G1480T	p.V494L	TTACCTGTGCGGC		91	4	0.04	92	0	0		49		6	0	0.00			
SFRP1	6422	mdanderson.org	37	8	41166542	41166542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_003012	exon1	c.A137G	p.Y46C	CTCTGGTACGGGC		38	3	0.08	18	0	0				6	0	0.00			
TIGD5	84948	mdanderson.org	37	8	144681631	144681631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_032862	exon1	c.G1558T	p.A520S	GCTCTGGCCTACA		50	3	0.06	33	0	0				43	0	0.00			
BNC2	54796	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	9	16727865	16727865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_017637	exon3	c.C260T	p.T87M	TCAGCCGTAGTCG		145	10	0.07	128	0	0				21	5	0.24			
LAMC3	10319	mdanderson.org	37	9	133936593	133936593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_006059	exon13	c.G2330A	p.C777Y	CCCACTGCCCCCC		21	3	0.14	21	0	0				45	0	0.00			
COX3	5742	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	9607	9607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	ENST00000362079	exon1	c.C401T	p.T134M	TAAACACATCCGT		12	12	1.00	13	0	0				0	0				
ZNF81	347344	mdanderson.org	37	X	47705716	47705716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	NM_007137	exon2	c.G50T	p.C17F	GTGCCTGTGAGGT		39	3	0.08	27	0	0				15	0	0.00			
.	0	bcgsc.ca	37	X	48136231	48136231	+	RNA	SNP	C	C	T	novel		TCGA-XY-A8S3-01B-11D-A435-10	TCGA-XY-A8S3-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3d16a6b4-e512-4c73-b4e5-3790bab36b40	4b44ec78-47bf-4365-8e9f-9d227503f3d0	.	.	.	.	.	.	GGTTGCCTTGAAA		393	129	0.33	314	0	0				0	0				
