Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
C1orf68	100129271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152692487	152692487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_001024679	exon1	c.G490T	p.A164S	TGCTCTGCTCCCT		176	22	0.13	163	0	0				0	0				
MUC6	4588	bcgsc.ca	37	11	1016908	1016908	+	Missense_Mutation	SNP	G	G	T	rs79018624		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	MUC6	NM_005961	exon31	c.C5893A	p.P1965T	TGAAGGGTGTGGG		196	8	0.04	314	6	0.0191082803		408		0	0				
KCNJ11	3767	mdanderson.org	37	11	17409231	17409231	+	Silent	SNP	G	G	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_000525	exon1	c.C408A	p.R136R	CACCATGCGCCCC		39	3	0.08	72	0	0				0	0				
DGKZ	8525	mdanderson.org	37	11	46400583	46400583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_001105540	exon29	c.G3025T	p.D1009Y	CACCGAGACGAGC		17	2	0.12	21	0	0				344	0	0.00			
C1QTNF4	114900	mdanderson.org	37	11	47612009	47612009	+	Silent	SNP	G	G	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_031909	exon2	c.C354A	p.A118A	CTGGCTGGCTGCG		15	2	0.13	26	0	0				6	0	0.00			
P2RX3	5024	mdanderson.org	37	11	57114905	57114905	+	Missense_Mutation	SNP	G	G	T	rs146469943	bycluster;alternate_allele	TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_002559	exon4	c.G344T	p.R115L	AATACCGCTGTGT		36	3	0.08	39	0	0				1	0	0.00			
EEF1G	1937	mdanderson.org	37	11	62341310	62341310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_001404	exon1	c.C5T	p.A2V	CCAGCCGCCATGG		22	3	0.14	31	0	0				835	0	0.00			
VEGFB	7423	broad.mit.edu	37	11	64005048	64005048	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	VEGFB	NM_001243733	exon6	c.A466C	p.T156P	CCCCGGACCTGCC		33	10	0.30	31	7	0.2258064516		18		120	6	0.05			
SF1	7536	mdanderson.org	37	11	64535590	64535590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_001178030	exon9	c.C1431A	p.N477K	AGGTGGGTTGTTG		31	3	0.10	31	0	0				619	0	0.00			
PDGFD	80310	mdanderson.org	37	11	103814199	103814199	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	PDGFD_ENST00000393158,NS,carcinoma,0,2	PDGFD_ENST00000393158	NM_025208	exon5	c.C753A	p.Y251X	GTCATGGTATGAC		47	3	0.06	70	0	0		0	2	2	0	0.00			
CASP5	838	mdanderson.org	37	11	104874075	104874075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_001136112	exon4	c.G508A	p.A170T	ATTCTGCTGACTC		43	3	0.07	51	0	0				2	0	0.00			
SNX19	399979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	130748342	130748342	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_014758	exon11	c.C2954G	p.S985C	CTCTTAGAGTTGC		83	19	0.23	96	0	0				63	14	0.22			
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25378561	25378561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	KRAS_ENST00000256078,colon,carcinoma,0,137	KRAS_ENST00000256078	NM_004985	exon4	c.C437T	p.A146V	GTCTTTGCTGATG		97	18	0.19	51	0	0		0	137	197	45	0.23			
PPP1R12A	4659	bcgsc.ca;mdanderson.org	37	12	80202290	80202290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	PPP1R12A	NM_002480	exon11	c.C1523A	p.T508K	TCAGATGTACTGG		111	5	0.05	92	0	0		76		70	0	0.00			
CCDC64	92558	mdanderson.org	37	12	120427799	120427799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_207311	exon1	c.C127A	p.L43I	GCCGCCCTCATCT		13	2	0.15	19	0	0				3	0	0.00			
DACH1	1602	mdanderson.org	37	13	72440446	72440446	+	Silent	SNP	G	G	A	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_080759	exon1	c.C462T	p.S154S	ACTACTGCTGCTG		17	2	0.12	37	1	0.027027027				3	0	0.00			
SPTB	6710	mdanderson.org	37	14	65260086	65260086	+	Silent	SNP	C	C	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_001024858	exon13	c.G2295A	p.L765L	AGAGAGCAGCCGG		37	3	0.08	34	0	0				3	0	0.00			
PTPN21	11099	mdanderson.org	37	14	88945892	88945892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_007039	exon13	c.G1883A	p.R628H	GCGTGGCGCGCGG		18	2	0.11	16	0	0				12	0	0.00			
CHGA	1113	mdanderson.org	37	14	93397926	93397926	+	Silent	SNP	G	G	A	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	CHGA,colon,carcinoma,0,2	CHGA	NM_001275	exon6	c.G687A	p.E229E	AGAAGAGGAGGAG		62	4	0.06	62	0	0		0	2	5	1	0.20			
OR4N3P	390539	bcgsc.ca	37	15	22413810	22413810	+	RNA	SNP	G	G	C	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	.	.	.	.	CTTGTTGTGATGG		137	10	0.07	136	1	0.0073529412				0	0				
LTK	4058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41804958	41804958	+	Silent	SNP	G	G	A	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	LTK_ENST00000263800,NS,carcinoma,-1,2	LTK_ENST00000263800	NM_001135685	exon3	c.C306T	p.A102A	CTGCCCGGCGGCC		29	6	0.21	45	0	0		-1	2	1	0	0.00			
ZNF646	9726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31088507	31088507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_014699	exon2	c.C862T	p.H288Y	CGACTGCATGCCC		93	17	0.18	110	0	0				39	15	0.38			
FBXL8	55336	mdanderson.org	37	16	67197098	67197098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_018378	exon3	c.T500C	p.L167P	ACAGCCTTTTTCT		16	2	0.13	24	1	0.0416666667				5	0	0.00			
SMG6	23293	mdanderson.org	37	17	1964855	1964855	+	Silent	SNP	C	C	A	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_017575	exon19	c.G4191T	p.V1397V	CGCCTTCACACGC		29	3	0.10	37	0	0				67	0	0.00			
KRTAP2-4	85294	hgsc.bcm.edu	37	17	39221816	39221816	+	Nonsense_Mutation	SNP	C	C	T	rs200049107		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	KRTAP2-4,trunk,malignant_melanoma,0,1	KRTAP2-4	NM_033184	exon1	c.G282A	p.W94X	GGTGGCCCAGCAG		7	3	0.43	11	0	0		0	1	0	0				
CDC27	996	hgsc.bcm.edu	37	17	45216150	45216150	+	Silent	SNP	T	T	C	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	CDC27_ENST00000531206,NS,carcinoma,0,2	CDC27_ENST00000531206	NM_001114091	exon13	c.A1677G	p.S559S	CAGAACTGAAAGA		49	5	0.10	61	0	0		0	2	83	0	0.00			
LAMA3	3909	mdanderson.org	37	18	21427621	21427621	+	Silent	SNP	C	C	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_198129	exon32	c.C4125T	p.S1375S	GGACAGCGGGCAG		35	3	0.09	41	0	0				1	0	0.00			
FBXO15	201456	mdanderson.org	37	18	71793289	71793289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_001142958	exon6	c.C833A	p.T278N	GATATGGTCAAAT		45	3	0.07	40	0	0				3	0	0.00			
ZNF407	55628	broad.mit.edu	37	18	72775488	72775488	+	Silent	SNP	A	A	G	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	ZNF407	NM_017757	exon8	c.A5811G	p.G1937G	TGATGGAGCCACC		13	3	0.23	38	1	0.0263157895		231		17	0	0.00			
TCF3	6929	mdanderson.org	37	19	1615323	1615323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_003200	exon18	c.G1783A	p.A595T	AGACAGCCTGGTG		28	3	0.11	58	0	0				853	0	0.00			
ZBTB7A	51341	mdanderson.org	37	19	4055177	4055177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_015898	exon2	c.C54A	p.S18R	GATGTCGCTGCTG		39	3	0.08	50	0	0				23	0	0.00			
TICAM1	148022	mdanderson.org	37	19	4816391	4816391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_182919	exon2	c.T1999C	p.S667P	CGGGTGAGGCCGT		39	3	0.08	43	0	0				25	0	0.00			
ZNF440	126070	broad.mit.edu	37	19	11943326	11943329	+	Frame_Shift_Del	DEL	ACAA	ACAA	-	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	ACAA	ACAA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	ZNF440	NM_152357	exon4	c.1335_1338del	p.445_446del	AAGGACACAAACA		68	9	0.13	57	0	0		56		20	0	0.00			
FAM32A	26017	broad.mit.edu	37	19	16296279	16296279	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	FAM32A	NM_014077	exon1	c.A26G	p.K9R	TCCAAAAGGGACC		133	4	0.03	151	1	0.0066225166		6		408	0	0.00			
TGFB1	7040	mdanderson.org	37	19	41858943	41858943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_000660	exon1	c.C7A	p.P3T	CGGAGGGCGGCAT		8	2	0.25	14	0	0				67	0	0.00			
FAM84A	151354	mdanderson.org	37	2	14774516	14774516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_145175	exon2	c.C413T	p.P138L	AGCCGCCCGCGCC		30	3	0.10	33	0	0				0	0				
SDC1	6382	mdanderson.org	37	2	20403974	20403974	+	Missense_Mutation	SNP	G	G	T	rs2230922	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_002997	exon3	c.C227A	p.T76K	GGAGACGTGGGAA		12	2	0.17	15	0	0				95	0	0.00			
ANKRD36B	57730	broad.mit.edu	37	2	98195765	98195766	+	RNA	INS	-	-	C	rs199664493		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	.	.	.	.	CAAGAAATATGCT		6	2	0.33	5	0	0				0	0				
CHST10	9486	mdanderson.org	37	2	101014548	101014548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_004854	exon5	c.G249T	p.E83D	CAGGCGCTCCATG		46	3	0.07	59	0	0				38	0	0.00			
SLC11A1	6556	mdanderson.org	37	2	219257813	219257813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_000578	exon12	c.C1274T	p.S425L	ACTTGTCGGGCCT		45	3	0.07	51	1	0.0196078431				0	0				
PTPRA	5786	mdanderson.org	37	20	3017924	3017924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_002836	exon27	c.G2323T	p.V775F	CACATGGTCCAGA		38	3	0.08	51	0	0				117	0	0.00			
RRBP1	6238	ucsc.edu	37	20	17639714	17639714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	RRBP1	.	.	.	.	GCCTTCTTGCCCT		109	1	0.01	181	0	0		157		315	52	0.17			
MYH7B	57644	hgsc.bcm.edu;mdanderson.org	37	20	33583281	33583281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_020884	exon28	c.G2969A	p.R990H	GCCGGCGCAAGCT		72	4	0.06	83	0	0				2	0	0.00			
HELZ2	85441	mdanderson.org	37	20	62198382	62198382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_001037335	exon7	c.C2329A	p.H777N	GGTAGTGCCGGGG		41	3	0.07	61	0	0				93	0	0.00			
.	0	broad.mit.edu	37	22	18846098	18846098	+	RNA	SNP	G	G	A	rs9306211	bycluster;byfrequency	TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	.	.	.	.	CTCGGCGCTCGAT		126	10	0.08	91	2	0.021978022				10	0	0.00			
RASL10A	10633	mdanderson.org	37	22	29709863	29709863	+	Silent	SNP	G	G	T	rs148807115	alternate_allele	TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_006477	exon2	c.C333A	p.I111I	CTCCGCGATGCGC		31	3	0.10	31	0	0				26	0	0.00			
ATRIP	84126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48488478	48488478	+	Missense_Mutation	SNP	G	G	T	rs372906254	alternate_allele	TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_130384	exon1	c.G229T	p.A77S	CCGGCCGCGGCTC		38	5	0.13	35	0	0				25	13	0.52			
KIAA2018	205717	ucsc.edu	37	3	113376116	113376116	+	Silent	SNP	C	C	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	KIAA2018	NM_001009899	exon7	c.G4413A	p.Q1471Q	TTGCTGCTGCTGC		50	8	0.16	60	1	0.0166666667		180		3	0	0.00			
DNAJC13	23317	broad.mit.edu	37	3	132172516	132172516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	DNAJC13	NM_015268	exon8	c.C818T	p.A273V	ATATTGCAACATT		37	3	0.08	41	0	0		253		49	0	0.00			
MCF2L2	23101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183013184	183013184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_015078	exon13	c.G1579A	p.A527T	TGGCTGCCAGTTT		190	63	0.33	181	0	0				12	7	0.58			
MUC4	4585	broad.mit.edu	37	3	195515102	195515102	+	Missense_Mutation	SNP	G	G	C	rs199995135		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	NM_018406	exon2	c.C3349G	p.H1117D	TGGTGTGACCTGT		109	4	0.04	149	0	0		1505	1	4	0	0.00			
FGFRL1	53834	mdanderson.org	37	4	1018719	1018719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_001004356	exon7	c.G1099T	p.A367S	CCTGTGGCCTCCT		33	3	0.09	25	0	0				104	0	0.00			
GABRG1	2565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	46053563	46053563	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_173536	exon8	c.G1009C	p.V337L	CAGAAACAAAGAG		56	6	0.11	66	0	0				0	0				
ANKHD1	54882	mdanderson.org	37	5	139781730	139781730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	ANKHD1-EIF4EBP3,NS,carcinoma,0,2	ANKHD1-EIF4EBP3	NM_024668	exon1	c.G178A	p.G60S	AGCAGCGGCGGCG		33	3	0.09	24	0	0		0	2	36	1	0.03			
HMGXB3	22993	mdanderson.org	37	5	149417004	149417004	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_014983	exon13	c.G2327T	p.S776I	CAGCCAGCCGTCT		46	3	0.07	61	1	0.0163934426				74	0	0.00			
MDN1	23195	mdanderson.org	37	6	90384205	90384205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	MDN1,NS,carcinoma,+1,1	MDN1	NM_014611	exon79	c.C12865A	p.R4289S	GCAGGCGCTCTGT		29	3	0.10	34	0	0		1	1	104	0	0.00			
SNX13	23161	broad.mit.edu;mdanderson.org	37	7	17836517	17836517	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	SNX13	NM_015132	exon25	c.C2559A	p.C853X	ATCTCTGCATGGA		82	4	0.05	48	0	0		113		45	0	0.00			
C7orf41	222166	hgsc.bcm.edu	37	7	30185862	30185862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_152793	exon2	c.G232T	p.G78C	TCCTGCGGCAAGA		145	5	0.03	107	0	0				133	0	0.00			
GTF2IP1	2970	hgsc.bcm.edu	37	7	72606495	72606495	+	RNA	SNP	C	C	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	.	.	.	.	GGCCACCACTGTA		193	55	0.28	179	0	0				0	0				
TECPR1	25851	mdanderson.org	37	7	97861128	97861128	+	Missense_Mutation	SNP	G	G	T	rs201920447	bycluster;by1000genomes;alternate_allele	TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_015395	exon13	c.C1962A	p.H654Q	CTCCTCGTGGACC		26	3	0.12	41	0	0				16	0	0.00			
NSMAF	8439	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	59572148	59572148	+	Missense_Mutation	SNP	G	G	C	rs148456704	bycluster;by1000genomes	TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_003580	exon1	c.C43G	p.L15V	AGTAGAGCTGCAG		55	4	0.07	56	0	0	0.003			166	16	0.10			
CIZ1	25792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130941502	130941502	+	Silent	SNP	C	C	T	rs145714867	byfrequency	TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	NM_001257975	exon8	c.G1074A	p.P358P	TATCCGCGGCTGA		59	7	0.12	62	0	0	0			219	76	0.35			
RNR1	6052	hgsc.bcm.edu	37	MT	1068	1068	+	RNA	SNP	A	A	G	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	.	.	.	.	GACCCAAACTGGG		8	4	0.50	15	0	0				0	0				
RNR2	6053	hgsc.bcm.edu;broad.mit.edu	37	MT	2631	2631	+	RNA	SNP	G	G	A	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	.	.	.	.	CTGTATGAATGGC		22	10	0.45	38	0	0				0	0				
DOCK11	139818	broad.mit.edu	37	X	117742320	117742320	+	Splice_Site	SNP	G	G	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	DOCK11	NM_144658	exon26	c.2877+1G>T	.	CTAAAGGTATGAA		183	5	0.03	141	0	0		185		0	0				
BAHCC1	57597	mdanderson.org	37	17	79412681	79412681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	.	.	.	.	AGTCCACGGCCGA		51	3	0.06	65	0	0				2	0	0.00			
PRKDC	5591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48746932	48746932	+	Silent	SNP	C	C	G	novel		TCGA-XY-A9T9-01A-11D-A435-10	TCGA-XY-A9T9-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b7cfdf05-2b6a-4413-b224-9beb1b8c1eee	918d43a9-d4cc-4c7e-b938-334abf37a910	.	.	.	.	.	.	CCCGGTCAGCCAA		121	10	0.08	88	0	0				288	41	0.14			
