Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
SDHB	6390	hgsc.bcm.edu	37	1	17371263	17371263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_003000	exon2	c.C193A	p.L65I	TATTAAGGTCAAC		92	4	0.04	81	0	0				158	0	0.00			
EVI5	7813	broad.mit.edu	37	1	92979095	92979124	+	Splice_Site	DEL	TATATATATATATATATATATATATATATG	TATATATATATATATATATATATATATATG	-	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	TATATATATATATATATATATATATATATG	TATATATATATATATATATATATATATATG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	EVI5	.	.	.	.	TATATATATATAT		37	33	0.89	15	0	0		94		0	0				
NRAS	4893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115258748	115258748	+	Missense_Mutation	SNP	C	C	T	rs121913250	bycluster	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	NRAS,NS,haematopoietic_neoplasm,+1,861	NRAS	NM_002524	exon2	c.G34A	p.G12S	CACCACCTGCTCC		196	30	0.15	208	0	0		1	861	50	16	0.32			
OBSCN	84033	hgsc.bcm.edu	37	1	228456342	228456342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	OBSCN_ENST00000570156,NS,carcinoma,-1,8	OBSCN_ENST00000570156	NM_001271223	exon19	c.C5525T	p.T1842M	AGGTGACGTGGTA		98	4	0.04	102	0	0		-1	8	1	0	0.00			
SMYD3	64754	mdanderson.org	37	1	246670511	246670511	+	Silent	SNP	C	C	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_001167740	exon1	c.G9A	p.P3P	CTTCAGCGGCTCC		76	4	0.05	51	0	0				16	0	0.00			
C11orf16	56673	mdanderson.org	37	11	8947472	8947472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_020643	exon5	c.C742A	p.P248T	TGATTGGCCCTAG		38	3	0.08	80	0	0				0	0				
.	0	bcgsc.ca	37	11	62815368	62815368	+	RNA	SNP	G	G	A	rs7125680	bycluster;byfrequency;by2hit2allele;byhapmap	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	.	.	.	.	GGTGCAGCATGCC		24	11	0.46	22	0	0				0	0				
ATG2A	23130	mdanderson.org	37	11	64678133	64678133	+	Silent	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_015104	exon12	c.C1662A	p.P554P	GGCGCAGGGCCGA		29	3	0.10	27	0	0				58	0	0.00			
B3GNT1	11041	mdanderson.org	37	11	66114323	66114323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_006876	exon1	c.C694A	p.P232T	CGCTGGGCACCAT		44	3	0.07	66	0	0				31	0	0.00			
GRIN2B	2904	mdanderson.org	37	12	13716591	13716591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	GRIN2B,NS,carcinoma,-1,1	GRIN2B	NM_000834	exon13	c.C3581A	p.P1194H	GGTGCAGGTACCC		43	3	0.07	41	0	0		-1	1	0	0				
SMARCD1	6602	hgsc.bcm.edu	37	12	50492743	50492743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_003076	exon13	c.G1508T	p.R503L	AGAGACGACAAGA		96	4	0.04	83	0	0				262	0	0.00			
AAAS	8086	broad.mit.edu;bcgsc.ca	37	12	53702803	53702804	+	Splice_Site	DEL	CT	CT	-	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	CT	CT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	AAAS	NM_015665	exon10	c.936_937del	p.312_313del	CCCAGACTCTGAG		72	9	0.13	62	0	0		46		159	0	0.00			
TIMELESS	8914	broad.mit.edu	37	12	56817448	56817448	+	Silent	SNP	C	C	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	TIMELESS,NS,carcinoma,0,1	TIMELESS	NM_003920	exon17	c.G2010A	p.E670E	CTCCTCCTCTTCT		97	4	0.04	66	1	0.0151515152		107	1	121	1	0.01			
POC1B	282809	mdanderson.org	37	12	89885738	89885738	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_172240	exon4	c.C427A	p.H143N	GTGTATGTCGATA		71	4	0.06	46	0	0				6	0	0.00			
CHFR	55743	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	133424713	133424713	+	Silent	SNP	G	G	A	rs372404283		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_001161344	exon14	c.C1641T	p.D547D	CACGCCGTCCAGA		135	6	0.04	109	0	0				54	1	0.02			
MTMR6	9107	mdanderson.org	37	13	25840300	25840300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_004685	exon4	c.C429A	p.H143Q	CTGCCAGTGTGAG		41	3	0.07	62	0	0				9	0	0.00			
FARP1	10160	mdanderson.org	37	13	99093031	99093031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_005766	exon24	c.C2737T	p.H913Y	ATGGTGCACGTGT		36	3	0.08	49	0	0				25	0	0.00			
TMEM55B	90809	mdanderson.org	37	14	20928916	20928916	+	Silent	SNP	C	C	A	rs149796661	alternate_allele	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	TMEM55B,NS,carcinoma,-2,1	TMEM55B	NM_001100814	exon2	c.G252T	p.G84G	GGCACTCCCACTG		42	3	0.07	50	0	0		-2	1	63	0	0.00			
LOC727924	0	broad.mit.edu	37	15	22332213	22332214	+	RNA	INS	-	-	A	rs144162914	bycluster;by1000genomes	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	.	.	.	.	TCAATATAAGACT		6	2	0.33	6	0	0				1	0	0.00			
GOLGA8DP	0	broad.mit.edu	37	15	22709885	22709885	+	RNA	DEL	G	G	-	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	.	.	.	.	TAATGTGGGGGGG		12	6	0.50	9	0	0				0	0				
LRRK1	79705	mdanderson.org	37	15	101593438	101593438	+	Silent	SNP	G	G	A	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_024652	exon26	c.G3867A	p.L1289L	CATGCTGAGGCAC		11	2	0.18	18	0	0				0	0				
COG7	91949	broad.mit.edu	37	16	23415150	23415150	+	Silent	SNP	T	T	C	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	COG7	NM_153603	exon13	c.A1668G	p.K556K	TGACCCTTTTTCC		66	3	0.05	94	0	0		62		26	0	0.00			
RRAD	6236	mdanderson.org	37	16	66956208	66956208	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_004165	exon5	c.C698A	p.S233X	GCCGCTGATGTCT		39	3	0.08	56	0	0				14	0	0.00			
LOC283922	0	broad.mit.edu;bcgsc.ca	37	16	74372644	74372644	+	RNA	SNP	A	A	G	rs2549260	bycluster	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	.	.	.	.	CTTGTCAGGGGGA		85	8	0.09	78	2	0.0256410256				0	0				
PIEZO1	9780	broad.mit.edu	37	16	88800398	88800398	+	Missense_Mutation	SNP	G	G	C	rs62639697	byfrequency	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	PIEZO1	NM_001142864	exon17	c.C2245G	p.Q749E	CCTCCTGCTGCTG		61	3	0.05	61	1	0.0163934426		79		23	0	0.00			
.	0	broad.mit.edu;ucsc.edu	37	16	90162556	90162556	+	RNA	SNP	G	G	A	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	ENSG00000196230,NS,malignant_melanoma,0,1	.	.	.	.	.	ACGGCCGAGGAGG		40	13	0.33	45	0	0			1	9	5	0.56			
SUZ12P1	0	broad.mit.edu	37	17	29061588	29061588	+	RNA	DEL	A	A	-	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	.	.	.	.	TAAATTAAGCTAA		8	4	0.50	5	0	0				0	0				
KRTAP4-4	84616	mdanderson.org	37	17	39316640	39316640	+	Missense_Mutation	SNP	G	G	T	rs73983195	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	KRTAP4-4,colon,carcinoma,0,1	KRTAP4-4	NM_032524	exon1	c.C304A	p.R102S	TGGGGCGGCAGCA		45	3	0.07	52	0	0		0	1	0	0				
ATP6V0A1	535	hgsc.bcm.edu	37	17	40653235	40653235	+	Silent	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_001130020	exon17	c.G1938T	p.L646L	TTTCCTGGTAGTG		95	5	0.05	101	0	0				41	0	0.00			
COA3	28958	broad.mit.edu	37	17	40950543	40950543	+	Silent	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_001040431	exon1	c.C157A	p.R53R	TTCGCCGCCGTGG		59	3	0.05	60	0	0				74	0	0.00			
.	0	broad.mit.edu	37	17	58511460	58511461	+	RNA	INS	-	-	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	.	.	.	.	ACCAACGTTTTTT		6	2	0.33	15	0	0				5	0	0.00			
ZNF397	84307	mdanderson.org	37	18	32825534	32825534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_001135178	exon4	c.G865T	p.V289L	TGTGATGTATGTG		51	3	0.06	95	0	0				47	0	0.00			
NANOS3	342977	mdanderson.org	37	19	13988167	13988167	+	Silent	SNP	G	G	A	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_001098622	exon1	c.G105A	p.E35E	GCCAGAGCCAGAG		29	3	0.10	30	0	0				916	0	0.00			
CCDC141	285025	mdanderson.org	37	2	179702468	179702468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_173648	exon23	c.C3478A	p.Q1160K	GCACCTGCCCCTT		69	5	0.07	74	0	0				0	0				
NFATC2	4773	mdanderson.org	37	20	50049078	50049078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	NFATC2,colon,carcinoma,0,1	NFATC2	NM_012340	exon9	c.G2248A	p.V750I	AGAGTACGGCCGC		32	3	0.09	40	0	0		0	1	0	0				
ZNF831	128611	mdanderson.org	37	20	57767022	57767022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_178457	exon1	c.G948T	p.Q316H	CCTGCAGCGGCAG		21	3	0.14	26	0	0				0	0				
STMN3	50861	mdanderson.org	37	20	62275591	62275591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_015894	exon2	c.C91A	p.P31T	TATTGGGGTGCGG		18	2	0.11	35	0	0				34	0	0.00			
SON	6651	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	21	34923420	34923420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_032195	exon3	c.G1883T	p.G628V	CAACAGGGGTGCT		105	7	0.07	65	0	0				104	1	0.01			
CBS	875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44485607	44485607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_000071	exon7	c.G556A	p.A186T	TCTCAGCCCCCAG		103	24	0.23	76	0	0				5	2	0.40			
KRTAP10-10	353333	hgsc.bcm.edu	37	21	46057832	46057832	+	Silent	SNP	T	T	A	rs149762795	bycluster;byfrequency;by1000genomes	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	KRTAP10-10,NS,carcinoma,0,1	KRTAP10-10	NM_181688	exon1	c.T498A	p.T166T	TTCCACTTCATGC		70	5	0.07	41	0	0	0.007	0	1	0	0				
POM121L4P	266697	ucsc.edu	37	22	21044345	21044345	+	Silent	SNP	T	T	C	rs372189549		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	POM121L4P	.	.	.	.	AGGAGCTGGGAGT		28	7	0.25	22	4	0.1818181818		3		0	0				
DZIP3	9666	bcgsc.ca;mdanderson.org	37	3	108392975	108392975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	DZIP3	NM_014648	exon24	c.G2640T	p.Q880H	AGAGCAGACTGAA		68	5	0.07	81	0	0		111		84	0	0.00			
MUC4	4585	mdanderson.org	37	3	195510780	195510780	+	Silent	SNP	G	G	A	rs77303944	bycluster;byfrequency	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_018406	exon2	c.C7671T	p.H2557H	GGTGGCGTGACCT		167	16	0.10	220	3	0.0136363636	0.009			5	0	0.00			
SH3TC1	54436	mdanderson.org	37	4	8226907	8226907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_018986	exon11	c.G1249T	p.V417L	GACTCAGTAGAGG		50	3	0.06	69	0	0				15	0	0.00			
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55599320	55599320	+	Missense_Mutation	SNP	G	G	C	rs121913506	bycluster	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	KIT,colon,carcinoma,0,932	KIT	NM_000222	exon17	c.G2446C	p.D816H	GCCAGAGACATCA		80	28	0.35	63	0	0		0	932	253	102	0.40			
CCDC158	339965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	77290777	77290777	+	Splice_Site	SNP	C	C	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	CCDC158,NS,carcinoma,0,1	CCDC158	NM_001042784	exon11	c.1150-1G>A	.	ATCAGCCTAAAAA		79	18	0.23	82	0	0		0	1	0	0				
DMGDH	29958	mdanderson.org	37	5	78328619	78328619	+	Silent	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_013391	exon9	c.C1408A	p.R470R	TGACTCGTTGAGT		49	3	0.06	73	0	0				2	0	0.00			
MUC21	394263	broad.mit.edu	37	6	30954534	30954534	+	Silent	SNP	T	T	A	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	MUC21,NS,carcinoma,0,3	MUC21	NM_001010909	exon2	c.T582A	p.T194T	CAGCACTGCCACC		54	4	0.07	52	1	0.0192307692		98	3	2	0	0.00			
GPR6	2830	mdanderson.org	37	6	110300885	110300885	+	Silent	SNP	C	C	A	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_005284	exon1	c.C570A	p.A190A	GCTTGCCGCCACT		39	3	0.08	37	0	0				0	0				
POM121	9883	broad.mit.edu;mdanderson.org	37	7	72418901	72418901	+	Silent	SNP	G	G	A	rs201837093	bycluster	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	POM121	NM_001257190	exon16	c.G2892A	p.P964P	CAGCCCGAGGAAG		61	8	0.13	53	0	0		131		8	1	0.13			
PRKAR2B	5577	broad.mit.edu;mdanderson.org	37	7	106799908	106799908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	PRKAR2B	NM_002736	exon11	c.G1138T	p.A380S	GTGCAAGCATTTG		128	5	0.04	80	0	0		34		37	0	0.00			
PLXNA4	91584	broad.mit.edu	37	7	131849922	131849922	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	PLXNA4	NM_020911	exon23	c.T4324C	p.F1442L	AAGTAAACCAATT		62	3	0.05	61	0	0		873		0	0				
XKR9	389668	mdanderson.org	37	8	71646414	71646414	+	Missense_Mutation	SNP	G	G	T	rs140733779	bycluster;alternate_allele	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	XKR9,NS,carcinoma,0,1	XKR9	NM_001011720	exon5	c.G877T	p.V293F	TATATTGTTAGGG		126	5	0.04	110	0	0		0	1	2	0	0.00			
WISP1	8840	broad.mit.edu	37	8	134232843	134232843	+	Silent	SNP	C	C	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	WISP1	NM_003882	exon3	c.C369T	p.C123C	GGGCTGCGTCCTG		396	6	0.02	308	0	0		64		2	0	0.00			
SLC39A4	55630	mdanderson.org	37	8	145640175	145640175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	SLC39A4_ENST00000276833,NS,carcinoma,+1,2	SLC39A4_ENST00000276833	NM_130849	exon5	c.C910A	p.Q304K	TCAGCTGCTGTTG		79	4	0.05	62	0	0		1	2	3	0	0.00			
TMEM245	23731	mdanderson.org	37	9	111795757	111795757	+	Silent	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_032012	exon17	c.C2424A	p.G808G	TGCCAAGCCTGTC		52	3	0.06	55	0	0				89	0	0.00			
PNPLA4	8228	broad.mit.edu	37	X	7868821	7868821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	PNPLA4	NM_004650	exon7	c.T668C	p.L223P	GGAAAAAGGGCTT		322	4	0.01	292	1	0.0034246575		24		37	0	0.00			
REPS2	9185	mdanderson.org	37	X	17072945	17072945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_004726	exon8	c.C986T	p.A329V	GTGATGCTGACTG		69	4	0.06	55	0	0				1	0	0.00			
SUPT20HL1	100130302	hgsc.bcm.edu	37	X	24382500	24382500	+	Silent	SNP	T	T	C	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_001136234	exon1	c.T1623C	p.A541A	TGCTGCTGCTGCT		85	10	0.12	66	0	0				0	0				
FAM104B	90736	mdanderson.org	37	X	55172630	55172630	+	Nonsense_Mutation	SNP	G	G	A	rs113263757	bycluster	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_001166700	exon3	c.C238T	p.Q80X	AGAACTGGGGAAA		36	3	0.08	34	1	0.0294117647				33	0	0.00			
FAM104B	90736	mdanderson.org	37	X	55172645	55172645	+	Missense_Mutation	SNP	C	C	G	rs1047042	bycluster;byfrequency;alternate_allele	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	NM_001166700	exon3	c.G223C	p.D75H	TTGCATCGGGTTC		36	3	0.08	31	1	0.0322580645				49	0	0.00			
RLIM	51132	ucsc.edu	37	X	73811755	73811755	+	Silent	SNP	T	T	G	rs7883332	bycluster;byfrequency;by1000genomes	TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	RLIM	NM_183353	exon5	c.G1395C	p.S465S	GGAACTCGAACTG		64	8	0.13	45	9	0.2		90		31	0	0.00			
TXNRD2	10587	mdanderson.org	37	22	19885565	19885565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90Q-01A-11D-A435-10	TCGA-YU-A90Q-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	526f0bd9-4127-4315-844c-3b0c77e5a7f4	b2156c22-0881-4a11-94c1-69b20568cc61	.	.	.	.	.	.	TACCTGGTCGAAG		17	3	0.18	32	0	0				18	0	0.00			
