Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
ESPN	83715	broad.mit.edu	37	1	6504676	6504676	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	ESPN	NM_031475	exon6	c.A1126C	p.T376P	ACCAGCACCCTCT		169	30	0.18	148	30	0.2027027027		32		0	0				
PRPF38A	84950	mdanderson.org	37	1	52876860	52876860	+	Silent	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_032864	exon4	c.G486T	p.L162L	CATTCTGCCCCGA		49	3	0.06	49	0	0				114	0	0.00			
LRP8	7804	broad.mit.edu;bcgsc.ca	37	1	53741395	53741395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	LRP8	NM_004631	exon6	c.A914G	p.Q305R	CCACACTGGAACT		108	6	0.06	89	0	0		58		1	0	0.00			
TCHH	7062	broad.mit.edu	37	1	152082647	152082647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	TCHH,extremity,malignant_melanoma,0,1	TCHH	NM_007113	exon3	c.T3046C	p.W1016R	TCTCCCACTCCTG		155	6	0.04	110	6	0.0545454545		275	1	0	0				
PKP1	5317	mdanderson.org	37	1	201294223	201294223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_000299	exon12	c.G2052T	p.M684I	CAGCATGCTCAAC		93	4	0.04	85	0	0				0	0				
ZC3H11A	9877	broad.mit.edu	37	1	203821424	203821424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	ZC3H11A	NM_014827	exon20	c.T2330C	p.I777T	AACTAATATGGGA		357	5	0.01	374	1	0.0026737968		71		104	0	0.00			
ZBTB18	10472	mdanderson.org	37	1	244218106	244218106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_205768	exon2	c.G1030T	p.D344Y	AGTGATGATGAGA		66	4	0.06	64	0	0				21	0	0.00			
PFKFB3	5209	mdanderson.org	37	10	6263368	6263368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_004566	exon9	c.G856T	p.V286L	AAGTTCGTGGAGG		64	3	0.05	85	0	0				16	0	0.00			
PCDH15	65217	broad.mit.edu	37	10	55582229	55582229	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	PCDH15_ENST00000417177,colon,carcinoma,0,2	PCDH15	NM_001142763	exon35	c.A5278C	p.I1760L	GAGAAATAGGAGG		51	6	0.12	51	2	0.0392156863		1715	2	0	0				
FRAT2	23401	mdanderson.org	37	10	99093719	99093719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_012083	exon1	c.C611A	p.A204E	GTGGCTGCAACCG		15	2	0.13	15	0	0				53	0	0.00			
RRP12	23223	mdanderson.org	37	10	99131871	99131871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_015179	exon20	c.G2302T	p.A768S	TGATGGCAGCTTC		53	3	0.06	60	1	0.0166666667				58	0	0.00			
MUC2	4583	hgsc.bcm.edu	37	11	1092884	1092884	+	Missense_Mutation	SNP	C	C	T	rs201415503		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	MUC2_ENST00000441003,NS,carcinoma,0,8	MUC2_ENST00000441003	NM_002457	exon30	c.C4703T	p.T1568M	CCACCACGGTGAC		69	3	0.04	61	1	0.0163934426		0	8	0	0				
TMEM179B	374395	broad.mit.edu	37	11	62556810	62556810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	TMEM179B,NS,carcinoma,0,1	TMEM179B	NM_199337	exon3	c.G331T	p.V111F	ATAGCCGTCTTCC		181	4	0.02	152	0	0		13	1	196	0	0.00			
ESRRA	2101	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	64082666	64082666	+	Silent	SNP	A	A	G	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	ESRRA,colon,carcinoma,0,1	ESRRA	NM_004451	exon6	c.A936G	p.L312L	GCAACTAGTGCGG		73	5	0.07	66	0	0		0	1	71	0	0.00			
CADM1	23705	hgsc.bcm.edu;mdanderson.org	37	11	115080343	115080343	+	Silent	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	CADM1,NS,carcinoma,0,6	CADM1	NM_014333	exon8	c.C1029A	p.T343T	GGTGGTGGTTGTT		43	4	0.09	50	1	0.02		0	6	11	0	0.00			
TECTA	7007	broad.mit.edu	37	11	120980079	120980079	+	Missense_Mutation	SNP	G	G	A	rs370688947	alternate_allele	TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	TECTA	NM_005422	exon3	c.G358A	p.A120T	GAGCCTGCCATCT		144	4	0.03	137	0	0		329		1	0	0.00			
BCL11B	64919	hgsc.bcm.edu	37	14	99641568	99641568	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	BCL11B,colon,carcinoma,0,1	BCL11B	NM_138576	exon4	c.G1605C	p.E535D	CTCCTCCTCGTCC		16	2	0.13	14	0	0		0	1	0	0				
CDC42BPB	9578	mdanderson.org	37	14	103410270	103410270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_006035	exon30	c.C4366T	p.R1456C	GCGCGCGTGCCCT		54	3	0.06	46	0	0				32	0	0.00			
RAB11A	8766	mdanderson.org	37	15	66170130	66170130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_004663	exon3	c.G267T	p.L89F	CTTATTGGTTTAT		138	5	0.04	88	0	0				114	0	0.00			
WDR24	84219	mdanderson.org	37	16	737362	737362	+	Silent	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_032259	exon3	c.C714A	p.T238T	GTGCGTGGTCATG		32	3	0.09	39	0	0				16	0	0.00			
LOC653786	0	broad.mit.edu	37	16	22579566	22579573	+	RNA	DEL	ATTCATCC	ATTCATCC	-	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	ATTCATCC	ATTCATCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	.	.	.	.	GGGTTAATTCATC		95	0	0.00	90	0	0				0	0				
.	0	broad.mit.edu	37	16	32077601	32077601	+	RNA	SNP	G	G	A	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	.	.	.	.	CTCCAGGGACAAC		322	6	0.02	265	0	0				7	7	1.00	rescued with RNA-seq		
HSF4	3299	mdanderson.org	37	16	67203614	67203614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_001040667	exon15	c.G1405T	p.A469S	CCTGGGGCTTTAA		53	3	0.06	49	0	0				7	0	0.00			
ANKRD11	29123	broad.mit.edu;bcgsc.ca	37	16	89351844	89351844	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	ANKRD11	NM_001256183	exon9	c.A1106G	p.K369R	TAGTCCTTTTTCA		177	7	0.04	188	1	0.0053191489		195		34	0	0.00			
.	0	broad.mit.edu	37	17	17579770	17579771	+	RNA	DEL	TG	TG	-	rs72152573	alternate_allele	TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	.	.	.	.	CAAGGCTGTGTGT		12	4	0.33	7	0	0				0	0				
SPOP	8405	broad.mit.edu	37	17	47688679	47688679	+	Silent	SNP	G	G	A	rs148282868		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	SPOP	NM_001007228	exon6	c.C621T	p.A207A	CTGGCCGGCAACA		138	3	0.02	99	0	0		91		40	0	0.00			
PRPSAP1	5635	mdanderson.org	37	17	74349677	74349677	+	Silent	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_002766	exon1	c.C108A	p.G36G	TCGGTAGCCGGTG		47	3	0.06	29	0	0				35	0	0.00			
GRIN3B	116444	broad.mit.edu	37	19	1009551	1009577	+	In_Frame_Del	DEL	GCCCCCGCGGAGGCCCCACCACACTCT	GCCCCCGCGGAGGCCCCACCACACTCT	-	rs58448123	alternate_allele	TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	GCCCCCGCGGAGGCCCCACCACACTCT	GCCCCCGCGGAGGCCCCACCACACTCT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	GRIN3B,NS,carcinoma,-1,1	GRIN3B	NM_138690	exon9	c.3082_3108del	p.1028_1036del	AGAGCGGCCCCCG		6	5	0.83	7	0	0		46	1	0	0				
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	10610444	10610444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_012289	exon2	c.C266T	p.P89L	GCGGCCGGTGCAT		89	4	0.04	87	0	0				40	0	0.00			
PSG4	5672	hgsc.bcm.edu;mdanderson.org	37	19	43699192	43699192	+	Missense_Mutation	SNP	G	G	T	rs367853186	alternate_allele	TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_002780	exon4	c.C943A	p.H315N	CATATCGGTCCCG		55	4	0.07	42	0	0				0	0				
PRR12	57479	mdanderson.org	37	19	50117808	50117808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_020719	exon7	c.C4792T	p.R1598C	ACGGGGCGTGAAC		28	3	0.11	35	0	0				48	0	0.00			
MBOAT7	79143	broad.mit.edu	37	19	54682579	54682579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	MBOAT7	NM_001146082	exon7	c.C934T	p.R312W	GCACCCGCACGCA		164	4	0.02	160	1	0.00625		37		99	0	0.00			
ZNF579	163033	mdanderson.org	37	19	56090220	56090220	+	Silent	SNP	C	C	G	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_152600	exon2	c.G786C	p.G262G	CGGGGGCCCCCCT		112	19	0.17	91	4	0.043956044				12	0	0.00			
EPCAM	4072	broad.mit.edu	37	2	47596282	47596282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	EPCAM	.	.	.	.	GGCCGCGCCCCAA		21	5	0.24	27	2	0.0740740741		27		2	0	0.00			
STAMBP	10617	broad.mit.edu	37	2	74077544	74077544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	STAMBP	NM_006463	exon8	c.G909T	p.K303N	CCCCAAGCAAAGT		320	5	0.02	283	0	0		37		52	0	0.00			
ANKRD36BP2	0	broad.mit.edu	37	2	89102230	89102230	+	RNA	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	.	.	.	.	CATCAGGTAGCTG		49	4	0.08	40	1	0.025				0	0				
MZT2B	80097	broad.mit.edu	37	2	130948058	130948058	+	Silent	SNP	C	C	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	MZT2B,caecum,carcinoma,0,1	MZT2B	NM_025029	exon3	c.C336T	p.S112S	AGGCAGCGCTGCC		155	4	0.03	163	0	0		5	1	462	1	0.00			
DES	1674	broad.mit.edu	37	2	220286080	220286080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	DES	NM_001927	exon6	c.C1042A	p.Q348K	ATGAGGCAGATGC		130	7	0.05	97	1	0.0103092784		53		8	0	0.00			
BAGE	85319	broad.mit.edu	37	21	11071942	11071942	+	RNA	DEL	G	G	-	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	.	.	.	.	ACACCTGGGAGTA		11	6	0.55	4	0	0				0	0				
GATSL3	652968	mdanderson.org	37	22	30682339	30682339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_001037666	exon6	c.G656T	p.S219I	TCAGGACTGCTAG		48	3	0.06	53	0	0				41	0	0.00			
MTFP1	51537	mdanderson.org	37	22	30821931	30821931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_016498	exon1	c.C64A	p.L22M	CGATACCTGGGTG		42	3	0.07	32	0	0				52	0	0.00			
ZNF621	285268	mdanderson.org	37	3	40573808	40573808	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	ZNF621,NS,carcinoma,0,1	ZNF621	NM_001098414	exon5	c.G547T	p.E183X	TGTAAGGAGTGTG		54	3	0.06	46	0	0		0	1	5	0	0.00			
GLYCTK	132158	mdanderson.org	37	3	52325040	52325040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_145262	exon3	c.G442T	p.D148Y	CTCCCGGACCGCG		50	3	0.06	61	0	0				31	0	0.00			
CCDC37	348807	broad.mit.edu	37	3	126135309	126135309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	CCDC37	NM_182628	exon5	c.G376T	p.A126S	CAGCGCGCCTTCC		91	6	0.07	63	1	0.0158730159		69		0	0				
KIT	3815	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	55594221	55594221	+	Missense_Mutation	SNP	A	A	G	rs121913512	bycluster	TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	KIT,NS,malignant_melanoma,0,38	KIT	NM_000222	exon13	c.A1924G	p.K642E	GAACTCAAAGTCC		160	8	0.05	164	0	0		0	38	29	13	0.45			
UGT2B11	10720	mdanderson.org	37	4	70066408	70066408	+	Missense_Mutation	SNP	C	C	A	rs200919649		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_001073	exon6	c.G1340T	p.R447I	TGAATTCTTGATA		91	7	0.08	104	1	0.0096153846				0	0				
LOC285441	644042	bcgsc.ca	37	4	187250120	187250120	+	RNA	SNP	C	C	A	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	.	.	.	.	ATCATACGGCTGA		39	4	0.10	29	0	0				0	0				
TRIP13	9319	mdanderson.org	37	5	908524	908524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_001166260	exon9	c.G814T	p.D272Y	CCATCAGATGCCA		40	3	0.08	50	0	0				8	0	0.00			
NEUROG1	4762	mdanderson.org	37	5	134871333	134871333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_006161	exon1	c.C48A	p.S16R	GCTGCTGCTGGCG		26	3	0.12	21	0	0				0	0				
SLC4A9	83697	mdanderson.org	37	5	139747091	139747091	+	Silent	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_001258428	exon15	c.G2172T	p.L724L	TGCCCTGCTGCTG		55	3	0.05	76	0	0				0	0				
SIMC1	375484	mdanderson.org	37	5	175665527	175665527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_198567	exon1	c.G16A	p.V6M	TTCATCGTGATCT		16	3	0.19	18	0	0				0	0				
MDC1	9656	broad.mit.edu	37	6	30681594	30681594	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	MDC1	NM_014641	exon3	c.C503A	p.S168X	TCCTCCGAGTCCT		129	5	0.04	133	0	0		218		3	0	0.00			
MUC21	394263	broad.mit.edu	37	6	30954534	30954534	+	Silent	SNP	T	T	A	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	MUC21,NS,carcinoma,0,3	MUC21	NM_001010909	exon2	c.T582A	p.T194T	CAGCACTGCCACC		63	4	0.06	65	1	0.0153846154		98	3	4	0	0.00			
SKIV2L	6499	bcgsc.ca;mdanderson.org	37	6	31933780	31933780	+	Missense_Mutation	SNP	G	G	T	rs372669695	alternate_allele	TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	SKIV2L	NM_006929	exon18	c.G2192T	p.R731L	TGCACCGCATGAT		59	5	0.08	65	0	0		97		50	0	0.00			
UNC93A	54346	ucsc.edu	37	6	167728900	167728901	+	Missense_Mutation	DNP	TC	TC	CG	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	TC	TC					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	UNC93A,ear,carcinoma,+1,2	UNC93A	NM_018974	exon8	c.C1335G	p.V445A	GACAGGTCAACCA		80	11	0.14	58	8	0.1379310345		66	2	0	0				
PKN3	29941	mdanderson.org	37	9	131467791	131467791	+	Silent	SNP	C	C	A	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_013355	exon2	c.C234A	p.I78I	CCGAATCCTGCTG		44	3	0.07	66	0	0				1	0	0.00			
EHMT1	79813	mdanderson.org	37	9	140707983	140707983	+	Splice_Site	SNP	G	G	T	rs137852724		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_024757	exon21	c.3180+1G>T	.	CTGCAGGTGAGTG		45	3	0.07	25	0	0				0	0				
GATA1	2623	mdanderson.org	37	X	48651622	48651622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	.	NM_002049	exon5	c.C788T	p.T263M	GCCAGACGACCAC		55	3	0.05	41	0	0				0	0				
TSPYL2	64061	broad.mit.edu	37	X	53112000	53112000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	TSPYL2	NM_022117	exon1	c.A320G	p.E107G	ATGGGGAGGCGCC		120	5	0.04	110	0	0		53		22	0	0.00			
CDX4	1046	broad.mit.edu	37	X	72667531	72667531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YU-A90S-01A-11D-A435-10	TCGA-YU-A90S-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	786db3db-1833-4d7f-8168-a9f029de4c19	d44ef07d-f21c-4327-893b-536b55976470	.	CDX4	NM_005193	exon1	c.T442C	p.S148P	GCCAGTTCCCCCA		29	5	0.17	21	2	0.0952380952		52		0	0				
